Wall clock time and date at job start Tue Mar 31 2020 14:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35991 * 117.00364 * 2 1 4 4 C 1.38670 * 120.04381 * 0.02562 * 3 2 1 5 5 C 1.38228 * 120.09051 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.90960 * 179.97438 * 5 4 3 7 7 C 1.50695 * 109.46925 * 90.00468 * 6 5 4 8 8 O 1.21274 * 120.00269 * 359.97438 * 7 6 5 9 9 N 1.34781 * 119.99804 * 179.97438 * 7 6 5 10 10 C 1.46503 * 119.99931 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47002 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47059 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00125 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99983 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99937 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99866 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46872 * 60.00777 * 16 14 12 18 18 H 1.48496 * 109.47152 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47559 * 300.00887 * 16 14 12 20 20 C 1.38228 * 120.17656 * 0.02562 * 5 4 3 21 21 C 1.38665 * 120.09327 * 359.97438 * 20 5 4 22 22 O 1.35998 * 120.04910 * 180.02562 * 21 20 5 23 23 C 1.42902 * 116.99524 * 0.02562 * 22 21 20 24 24 C 1.38974 * 120.04780 * 179.72805 * 3 2 1 25 25 O 1.36099 * 120.08712 * 359.97438 * 24 3 2 26 26 C 1.42896 * 117.00088 * 90.00136 * 25 24 3 27 27 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46938 * 59.99845 * 1 2 3 29 29 H 1.09004 * 109.46926 * 299.99967 * 1 2 3 30 30 H 1.08003 * 119.95597 * 359.97438 * 4 3 2 31 31 H 1.09007 * 109.46711 * 210.00291 * 6 5 4 32 32 H 1.08999 * 109.47223 * 329.99898 * 6 5 4 33 33 H 0.97001 * 120.00053 * 359.97438 * 9 7 6 34 34 H 1.08994 * 109.47456 * 300.00132 * 10 9 7 35 35 H 1.09003 * 109.46829 * 59.99857 * 10 9 7 36 36 H 1.09003 * 109.47317 * 300.00127 * 11 10 9 37 37 H 1.08999 * 109.47132 * 59.99854 * 11 10 9 38 38 H 0.97001 * 119.99616 * 179.97438 * 15 14 12 39 39 H 1.08005 * 119.95608 * 180.02562 * 20 5 4 40 40 H 1.09000 * 109.47269 * 299.99771 * 23 22 21 41 41 H 1.09003 * 109.47475 * 60.00174 * 23 22 21 42 42 H 1.09005 * 109.46842 * 180.02562 * 23 22 21 43 43 H 1.09000 * 109.47319 * 179.97438 * 26 25 24 44 44 H 1.09002 * 109.47232 * 299.99741 * 26 25 24 45 45 H 1.09005 * 109.47428 * 59.99802 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2922 2.3753 0.0005 5 6 1.9188 3.6074 0.0011 6 6 1.0951 4.8693 0.0011 7 6 0.8201 5.2896 1.4218 8 8 1.2502 4.6293 2.3436 9 7 0.0962 6.3995 1.6681 10 6 -0.1716 6.8079 3.0494 11 6 -1.0067 8.0898 3.0494 12 6 -1.2817 8.5102 4.4702 13 1 -0.8987 7.9221 5.2911 14 6 -2.0213 9.6463 4.7221 15 7 -2.4872 10.3627 3.7225 16 14 -2.3627 10.1670 6.4833 17 1 -1.0770 10.4130 7.1848 18 1 -3.1731 11.4113 6.4833 19 1 -3.1095 9.0903 7.1819 20 6 3.2989 3.6850 0.0005 21 6 4.0605 2.5262 0.0000 22 8 5.4183 2.6036 0.0000 23 6 5.9934 3.9118 0.0011 24 6 3.4343 1.2855 0.0057 25 8 4.1781 0.1458 0.0118 26 6 4.5381 -0.4008 -1.2584 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 0.2137 2.3188 0.0005 31 1 1.6421 5.6601 -0.5125 32 1 0.1515 4.6873 -0.5132 33 1 -0.2475 6.9279 0.9309 34 1 -0.7190 6.0172 3.5624 35 1 0.7720 6.9893 3.5640 36 1 -0.4588 8.8804 2.5365 37 1 -1.9502 7.9088 2.5345 38 1 -3.0078 11.1617 3.8998 39 1 3.7848 4.6496 0.0014 40 1 5.6692 4.4520 -0.8883 41 1 5.6693 4.4505 0.8917 42 1 7.0804 3.8308 0.0006 43 1 5.1285 -1.3051 -1.1108 44 1 3.6351 -0.6435 -1.8187 45 1 5.1257 0.3294 -1.8149 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273012640.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:38 Heat of formation + Delta-G solvation = -154.549261 kcal Electronic energy + Delta-G solvation = -26976.760613 eV Core-core repulsion = 22959.538509 eV Total energy + Delta-G solvation = -4017.222104 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.91940 -40.62175 -40.00819 -38.78106 -37.66620 -36.50051 -34.80435 -33.16150 -31.53943 -30.69669 -29.33291 -28.75077 -28.03279 -27.06720 -26.09313 -23.32385 -23.04315 -22.62338 -21.41862 -19.51025 -18.59763 -18.31645 -18.31020 -17.90777 -17.56622 -17.19838 -16.68551 -16.47750 -16.45924 -16.41598 -16.01263 -15.74887 -15.50749 -15.15443 -15.03767 -14.66157 -14.30643 -14.12801 -13.59409 -13.33673 -13.33404 -13.21165 -12.94600 -12.73109 -12.65465 -12.54661 -12.49609 -12.42398 -12.20043 -11.98962 -11.66455 -11.62892 -11.46279 -10.98508 -10.81094 -10.59825 -9.98532 -9.26304 -9.21168 -8.24261 -6.34299 0.04540 0.30734 1.41697 1.43322 1.51411 1.70013 1.83437 2.19746 2.40240 2.59373 2.67094 2.87854 3.10492 3.49372 3.90505 3.96951 4.00427 4.12293 4.29330 4.29728 4.36665 4.36752 4.39936 4.48292 4.48477 4.48973 4.53488 4.56058 4.60030 4.71145 4.71429 4.76755 4.87177 4.94361 5.09219 5.30859 5.37168 5.42196 5.51130 5.59991 5.79736 6.02450 6.17149 6.24434 6.65660 6.68325 6.78832 7.34094 7.34906 8.87089 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.019294 B = 0.002322 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.870173 B =12056.173458 C =12825.969701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.322 6.322 3 C 0.138 3.862 4 C -0.221 4.221 5 C 0.005 3.995 6 C -0.095 4.095 7 C 0.507 3.493 8 O -0.586 6.586 9 N -0.716 5.716 10 C 0.141 3.859 11 C 0.024 3.976 12 C -0.549 4.549 13 H 0.056 0.944 14 C 0.009 3.991 15 N -0.925 5.925 16 Si 0.962 3.038 17 H -0.269 1.269 18 H -0.280 1.280 19 H -0.270 1.270 20 C -0.221 4.221 21 C 0.138 3.862 22 O -0.322 6.322 23 C 0.016 3.984 24 C 0.000 4.000 25 O -0.338 6.338 26 C 0.033 3.967 27 H 0.123 0.877 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.151 0.849 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.413 0.587 34 H 0.043 0.957 35 H 0.042 0.958 36 H 0.010 0.990 37 H 0.010 0.990 38 H 0.266 0.734 39 H 0.151 0.849 40 H 0.074 0.926 41 H 0.055 0.945 42 H 0.123 0.877 43 H 0.109 0.891 44 H 0.046 0.954 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.927 -16.739 -16.744 26.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.235 6.235 3 C 0.091 3.909 4 C -0.240 4.240 5 C 0.004 3.996 6 C -0.134 4.134 7 C 0.295 3.705 8 O -0.467 6.467 9 N -0.368 5.368 10 C 0.017 3.983 11 C -0.014 4.014 12 C -0.587 4.587 13 H 0.074 0.926 14 C -0.190 4.190 15 N -0.564 5.564 16 Si 0.786 3.214 17 H -0.194 1.194 18 H -0.205 1.205 19 H -0.195 1.195 20 C -0.240 4.240 21 C 0.091 3.909 22 O -0.235 6.235 23 C -0.078 4.078 24 C -0.045 4.045 25 O -0.255 6.255 26 C -0.061 4.061 27 H 0.141 0.859 28 H 0.093 0.907 29 H 0.074 0.926 30 H 0.169 0.831 31 H 0.156 0.844 32 H 0.156 0.844 33 H 0.250 0.750 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.029 0.971 37 H 0.029 0.971 38 H 0.075 0.925 39 H 0.169 0.831 40 H 0.093 0.907 41 H 0.074 0.926 42 H 0.141 0.859 43 H 0.127 0.873 44 H 0.065 0.935 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.416 -17.491 -15.978 26.298 hybrid contribution -0.731 1.124 0.607 1.471 sum 10.685 -16.368 -15.372 24.867 Atomic orbital electron populations 1.23415 0.76152 1.05817 1.02373 1.86099 1.23516 1.25737 1.88189 1.19022 0.90591 0.85614 0.95647 1.21127 1.01028 0.90797 1.11075 1.19106 0.92849 0.94008 0.93618 1.20783 1.03499 0.96327 0.92796 1.21133 0.77300 0.79927 0.92187 1.90713 1.52910 1.54839 1.48212 1.46123 1.54140 1.27101 1.09431 1.21172 0.98324 0.96719 0.82057 1.19122 0.94338 0.91430 0.96486 1.21450 1.33968 1.09958 0.93334 0.92579 1.25832 0.95261 0.96329 1.01613 1.70037 1.36522 1.16968 1.32878 0.85548 0.78494 0.77707 0.79609 1.19449 1.20520 1.19458 1.21125 0.94090 0.97738 1.11078 1.19025 0.83527 0.92682 0.95650 1.86102 1.16218 1.33028 1.88192 1.23415 1.00312 0.81660 1.02373 1.17284 0.87049 0.85048 1.15136 1.86106 1.70298 1.38262 1.30806 1.23120 0.99821 0.99018 0.84126 0.85866 0.90748 0.92611 0.83133 0.84362 0.84359 0.75024 0.93903 0.93914 0.97139 0.97131 0.92522 0.83133 0.90749 0.92612 0.85866 0.87277 0.93499 0.93504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.32 -7.98 10.28 -79.51 -0.82 -8.80 16 3 C 0.14 3.74 6.70 22.55 0.15 3.89 16 4 C -0.22 -5.32 8.69 22.37 0.19 -5.13 16 5 C 0.00 0.12 4.37 -19.87 -0.09 0.03 16 6 C -0.09 -1.80 5.83 29.10 0.17 -1.63 16 7 C 0.51 15.37 7.82 87.65 0.69 16.05 16 8 O -0.59 -23.69 16.03 -3.01 -0.05 -23.74 16 9 N -0.72 -22.61 5.56 -463.06 -2.57 -25.18 16 10 C 0.14 5.89 5.61 86.38 0.48 6.37 16 11 C 0.02 1.16 5.09 29.85 0.15 1.31 16 12 C -0.55 -30.30 9.11 25.60 0.23 -30.07 16 13 H 0.06 3.05 7.74 -2.91 -0.02 3.03 16 14 C 0.01 0.48 5.46 84.66 0.46 0.94 16 15 N -0.92 -53.32 13.29 21.45 0.28 -53.03 16 16 Si 0.96 43.21 29.54 68.60 2.03 45.24 16 17 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 18 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 19 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 20 C -0.22 -5.32 8.69 22.37 0.19 -5.13 16 21 C 0.14 3.73 6.70 22.55 0.15 3.88 16 22 O -0.32 -7.98 10.28 -79.58 -0.82 -8.79 16 23 C 0.02 0.26 9.81 113.37 1.11 1.37 16 24 C 0.00 0.00 5.75 22.62 0.13 0.13 16 25 O -0.34 -9.93 9.99 -70.52 -0.70 -10.64 16 26 C 0.03 0.67 11.13 113.37 1.26 1.93 16 27 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.07 0.87 7.66 -2.39 -0.02 0.86 16 29 H 0.06 0.91 7.66 -2.38 -0.02 0.89 16 30 H 0.15 2.93 6.29 -2.91 -0.02 2.91 16 31 H 0.14 1.75 8.08 -2.38 -0.02 1.74 16 32 H 0.14 1.75 8.08 -2.39 -0.02 1.74 16 33 H 0.41 10.51 8.47 -92.71 -0.79 9.72 16 34 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.04 1.88 8.14 -2.39 -0.02 1.87 16 36 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 39 H 0.15 2.93 6.29 -2.91 -0.02 2.91 16 40 H 0.07 0.87 7.66 -2.39 -0.02 0.86 16 41 H 0.06 0.91 7.66 -2.39 -0.02 0.89 16 42 H 0.12 1.30 8.14 -2.38 -0.02 1.28 16 43 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 Total: -1.00 -77.30 384.04 3.98 -73.32 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 0.22 Total: 16.29 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: 6.41 Total: -4.67 kcal Atomic # 7 Polarization: -75.92 SS G_CDS: -2.29 Total: -78.21 kcal Atomic # 8 Polarization: -49.58 SS G_CDS: -2.39 Total: -51.97 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -77.30 3.98 -73.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273012640.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.232 kcal (2) G-P(sol) polarization free energy of solvation -77.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds