Wall clock time and date at job start Tue Mar 31 2020 14:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34229 * 117.00404 * 2 1 4 4 O 1.20826 * 119.99732 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00123 * 179.97438 * 3 2 1 6 6 H 1.08993 * 109.47312 * 60.00244 * 5 3 2 7 7 N 1.46905 * 109.47267 * 180.02562 * 5 3 2 8 8 C 1.46900 * 111.00048 * 275.00360 * 7 5 3 9 9 C 1.52992 * 109.47311 * 179.97438 * 8 7 5 10 10 C 1.50707 * 109.47236 * 179.97438 * 9 8 7 11 11 H 1.07996 * 119.99875 * 0.02562 * 10 9 8 12 12 C 1.37870 * 119.99801 * 180.02562 * 10 9 8 13 13 N 1.31510 * 120.00395 * 0.02562 * 12 10 9 14 14 Si 1.86809 * 119.99656 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47195 * 60.00143 * 14 12 10 16 16 H 1.48500 * 109.46909 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.46945 * 299.99815 * 14 12 10 18 18 C 1.50704 * 109.47269 * 299.99624 * 5 3 2 19 19 C 1.38177 * 119.94434 * 280.23644 * 18 5 3 20 20 C 1.38777 * 120.04764 * 180.23231 * 19 18 5 21 21 O 1.35905 * 120.02101 * 179.78997 * 20 19 18 22 22 C 1.42901 * 116.99604 * 179.72187 * 21 20 19 23 23 C 1.38631 * 119.94881 * 359.51135 * 20 19 18 24 24 C 1.38630 * 119.89004 * 0.25393 * 23 20 19 25 25 O 1.35902 * 120.02702 * 180.02562 * 24 23 20 26 26 C 1.42898 * 117.00078 * 359.97438 * 25 24 23 27 27 C 1.38174 * 119.94243 * 100.00135 * 18 5 3 28 28 H 1.09001 * 109.47272 * 300.00438 * 1 2 3 29 29 H 1.08996 * 109.46874 * 60.00100 * 1 2 3 30 30 H 1.08999 * 109.47343 * 180.02562 * 1 2 3 31 31 H 1.00896 * 111.00625 * 151.04446 * 7 5 3 32 32 H 1.09007 * 109.46523 * 299.99718 * 8 7 5 33 33 H 1.09004 * 109.47179 * 59.99363 * 8 7 5 34 34 H 1.08998 * 109.47500 * 300.00073 * 9 8 7 35 35 H 1.09004 * 109.47264 * 59.99726 * 9 8 7 36 36 H 0.96998 * 119.99993 * 180.02562 * 13 12 10 37 37 H 1.07996 * 119.97788 * 0.02562 * 19 18 5 38 38 H 1.08995 * 109.47253 * 179.97438 * 22 21 20 39 39 H 1.08998 * 109.47043 * 300.00197 * 22 21 20 40 40 H 1.08999 * 109.47144 * 59.99795 * 22 21 20 41 41 H 1.07999 * 120.05200 * 180.23549 * 23 20 19 42 42 H 1.09000 * 109.46782 * 59.99906 * 26 25 24 43 43 H 1.08994 * 109.47222 * 179.97438 * 26 25 24 44 44 H 1.08996 * 109.47248 * 300.00331 * 26 25 24 45 45 H 1.07998 * 119.97581 * 359.97438 * 27 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 0.0006 6 1 3.9564 0.7805 -0.8891 7 7 3.9830 2.6835 0.0011 8 6 4.0181 3.2226 -1.3650 9 6 4.4546 4.6883 -1.3238 10 6 4.4913 5.2412 -2.7253 11 1 4.2290 4.6103 -3.5616 12 6 4.8596 6.5524 -2.9397 13 7 5.1795 7.3205 -1.9213 14 14 4.9043 7.2378 -4.6769 15 1 3.5516 7.1417 -5.2819 16 1 5.3293 8.6601 -4.6369 17 1 5.8682 6.4564 -5.4926 18 6 4.1047 0.5919 1.2315 19 6 4.0990 1.2527 2.4450 20 6 4.5986 0.6277 3.5789 21 8 4.5967 1.2797 4.7713 22 6 5.1206 0.5733 5.8977 23 6 5.0944 -0.6643 3.4954 24 6 5.0945 -1.3268 2.2776 25 8 5.5794 -2.5936 2.1927 26 6 6.0738 -3.1812 3.3978 27 6 4.5987 -0.6957 1.1455 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 4.8757 2.7965 0.4574 32 1 4.7257 2.6490 -1.9638 33 1 3.0252 3.1518 -1.8092 34 1 3.7468 5.2616 -0.7251 35 1 5.4475 4.7594 -0.8794 36 1 5.4383 8.2431 -2.0721 37 1 3.7085 2.2574 2.5105 38 1 5.0607 1.2059 6.7832 39 1 4.5399 -0.3347 6.0593 40 1 6.1615 0.3102 5.7094 41 1 5.4801 -1.1536 4.3775 42 1 5.2734 -3.2228 4.1366 43 1 6.4293 -4.1904 3.1906 44 1 6.8951 -2.5786 3.7855 45 1 4.5982 -1.2116 0.1967 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273038674.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:09 Heat of formation + Delta-G solvation = -150.850314 kcal Electronic energy + Delta-G solvation = -27452.822168 eV Core-core repulsion = 23435.760462 eV Total energy + Delta-G solvation = -4017.061705 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.93480 -41.26883 -39.79296 -38.75658 -37.52097 -36.73171 -35.05569 -32.88015 -31.36912 -30.54591 -29.32146 -28.74638 -27.48679 -27.18462 -25.55589 -23.52526 -23.19644 -22.31603 -21.46569 -19.72556 -18.59226 -18.54766 -17.94399 -17.64909 -17.28852 -17.05602 -16.92567 -16.85825 -16.65117 -16.38770 -16.19306 -15.64972 -15.38429 -15.22146 -14.58727 -14.36343 -14.22175 -13.99419 -13.74397 -13.58328 -13.21940 -13.18638 -13.01931 -12.86632 -12.75248 -12.46050 -12.45777 -12.22813 -12.16796 -11.99360 -11.84628 -11.77174 -11.50503 -11.32353 -11.23807 -10.55406 -9.70911 -9.50365 -9.04816 -8.19067 -6.30831 0.07498 0.40031 1.17371 1.40306 1.44520 1.52111 1.62764 2.22582 2.31370 2.41302 2.58913 3.14231 3.24056 3.43255 3.87341 3.89606 3.98049 4.04722 4.05121 4.31372 4.32329 4.32576 4.34273 4.36941 4.41145 4.43524 4.48820 4.51005 4.65285 4.68854 4.72958 4.77343 5.02961 5.13744 5.16243 5.32287 5.35678 5.43375 5.46788 5.64349 5.74502 5.98540 6.17785 6.19545 6.37256 6.48553 6.79685 6.85382 7.37976 8.93163 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.012472 B = 0.003040 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.449383 B = 9208.196432 C = 9999.764862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.358 6.358 3 C 0.466 3.534 4 O -0.514 6.514 5 C 0.144 3.856 6 H 0.112 0.888 7 N -0.676 5.676 8 C 0.086 3.914 9 C 0.036 3.964 10 C -0.545 4.545 11 H 0.062 0.938 12 C 0.000 4.000 13 N -0.932 5.932 14 Si 0.968 3.032 15 H -0.269 1.269 16 H -0.282 1.282 17 H -0.263 1.263 18 C -0.018 4.018 19 C -0.183 4.183 20 C 0.159 3.841 21 O -0.334 6.334 22 C 0.016 3.984 23 C -0.281 4.281 24 C 0.164 3.836 25 O -0.324 6.324 26 C 0.015 3.985 27 C -0.169 4.169 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.138 0.862 31 H 0.359 0.641 32 H 0.038 0.962 33 H 0.049 0.951 34 H -0.011 1.011 35 H -0.002 1.002 36 H 0.264 0.736 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.164 0.836 42 H 0.067 0.933 43 H 0.122 0.878 44 H 0.065 0.935 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.075 -25.963 14.681 29.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.274 6.274 3 C 0.308 3.692 4 O -0.401 6.401 5 C 0.033 3.967 6 H 0.129 0.871 7 N -0.311 5.311 8 C -0.042 4.042 9 C -0.002 4.002 10 C -0.584 4.584 11 H 0.080 0.920 12 C -0.198 4.198 13 N -0.571 5.571 14 Si 0.792 3.208 15 H -0.194 1.194 16 H -0.207 1.207 17 H -0.187 1.187 18 C -0.019 4.019 19 C -0.203 4.203 20 C 0.113 3.887 21 O -0.247 6.247 22 C -0.078 4.078 23 C -0.300 4.300 24 C 0.118 3.882 25 O -0.237 6.237 26 C -0.079 4.079 27 C -0.188 4.188 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.156 0.844 31 H 0.181 0.819 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.007 0.993 35 H 0.016 0.984 36 H 0.073 0.927 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.182 0.818 42 H 0.085 0.915 43 H 0.140 0.860 44 H 0.084 0.916 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.928 -25.203 14.763 29.223 hybrid contribution 0.558 0.577 -0.645 1.030 sum -0.370 -24.626 14.118 28.388 Atomic orbital electron populations 1.23536 0.74977 1.05724 1.02221 1.86485 1.24757 1.32184 1.83963 1.23820 0.91948 0.81433 0.72017 1.90686 1.67069 1.37560 1.44788 1.19847 0.87741 0.90750 0.98366 0.87110 1.59964 1.36808 1.13987 1.20331 1.21883 0.99257 0.96232 0.86831 1.18854 0.94603 0.91022 0.95685 1.21560 1.45954 0.97122 0.93750 0.92028 1.25991 0.94672 0.97393 1.01716 1.70109 1.46676 1.07635 1.32721 0.85458 0.78956 0.77249 0.79108 1.19442 1.20742 1.18726 1.18761 0.97441 0.93542 0.92119 1.20218 1.07449 1.01849 0.90754 1.18680 0.93800 0.90553 0.85643 1.86122 1.79052 1.43641 1.15915 1.23412 0.99233 0.98846 0.86345 1.21473 1.12948 0.96064 0.99519 1.18603 0.92367 0.84373 0.92870 1.86091 1.75362 1.25116 1.37156 1.23416 0.99282 0.99783 0.85455 1.20226 1.05371 0.94160 0.99047 0.92499 0.92299 0.84424 0.81927 0.94400 0.93198 0.99282 0.98365 0.92727 0.86174 0.86431 0.91179 0.91304 0.81822 0.91474 0.85959 0.91611 0.83417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.81 16 2 O -0.36 -10.04 10.48 -51.41 -0.54 -10.58 16 3 C 0.47 16.11 7.11 71.23 0.51 16.62 16 4 O -0.51 -21.93 15.67 21.96 0.34 -21.58 16 5 C 0.14 4.57 2.72 43.42 0.12 4.69 16 6 H 0.11 3.05 7.66 -2.39 -0.02 3.04 16 7 N -0.68 -26.19 5.23 -499.36 -2.61 -28.80 16 8 C 0.09 3.86 5.32 86.30 0.46 4.32 16 9 C 0.04 2.01 5.23 29.85 0.16 2.17 16 10 C -0.55 -32.32 9.11 25.60 0.23 -32.09 16 11 H 0.06 3.47 7.74 -2.91 -0.02 3.44 16 12 C 0.00 0.02 5.46 84.65 0.46 0.48 16 13 N -0.93 -58.69 13.29 21.44 0.28 -58.41 16 14 Si 0.97 45.55 29.54 68.60 2.03 47.58 16 15 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 16 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 17 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 18 C -0.02 -0.50 4.63 -19.89 -0.09 -0.59 16 19 C -0.18 -5.46 8.94 22.38 0.20 -5.26 16 20 C 0.16 4.00 6.68 22.49 0.15 4.15 16 21 O -0.33 -7.91 10.50 -92.48 -0.97 -8.88 16 22 C 0.02 0.19 9.81 113.37 1.11 1.31 16 23 C -0.28 -5.50 8.02 22.46 0.18 -5.32 16 24 C 0.16 3.49 6.68 22.49 0.15 3.64 16 25 O -0.32 -5.85 10.50 -92.44 -0.97 -6.82 16 26 C 0.01 0.13 9.81 113.37 1.11 1.24 16 27 C -0.17 -4.02 9.60 22.38 0.21 -3.81 16 28 H 0.06 1.27 8.13 -2.39 -0.02 1.25 16 29 H 0.06 1.31 8.13 -2.39 -0.02 1.29 16 30 H 0.14 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.36 13.20 7.99 -89.70 -0.72 12.49 16 32 H 0.04 1.55 8.06 -2.38 -0.02 1.54 16 33 H 0.05 2.36 7.62 -2.38 -0.02 2.34 16 34 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 35 H 0.00 -0.12 8.14 -2.38 -0.02 -0.14 16 36 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 37 H 0.12 4.15 7.72 -2.91 -0.02 4.13 16 38 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.07 0.63 7.66 -2.39 -0.02 0.62 16 40 H 0.07 0.66 7.66 -2.39 -0.02 0.64 16 41 H 0.16 2.05 4.54 -2.91 -0.01 2.04 16 42 H 0.07 0.44 7.66 -2.39 -0.02 0.42 16 43 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.07 0.46 7.66 -2.39 -0.02 0.44 16 45 H 0.15 3.08 8.03 -2.91 -0.02 3.06 16 Total: -1.00 -78.90 381.50 4.01 -74.89 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: 0.29 Total: 19.26 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: 6.16 Total: -6.66 kcal Atomic # 7 Polarization: -84.89 SS G_CDS: -2.32 Total: -87.21 kcal Atomic # 8 Polarization: -45.72 SS G_CDS: -2.14 Total: -47.86 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -78.90 4.01 -74.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273038674.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.959 kcal (2) G-P(sol) polarization free energy of solvation -78.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds