Wall clock time and date at job start Tue Mar 31 2020 14:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 116.99983 * 2 1 4 4 O 1.20822 * 120.00142 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00053 * 180.02562 * 3 2 1 6 6 H 1.09008 * 109.47488 * 300.00148 * 5 3 2 7 7 N 1.46896 * 109.47313 * 180.02562 * 5 3 2 8 8 C 1.46905 * 111.00191 * 84.99729 * 7 5 3 9 9 C 1.53004 * 109.46990 * 180.02562 * 8 7 5 10 10 C 1.50699 * 109.46954 * 179.97438 * 9 8 7 11 11 H 1.08003 * 119.99870 * 0.02562 * 10 9 8 12 12 C 1.37872 * 120.00064 * 180.02562 * 10 9 8 13 13 N 1.31518 * 120.00280 * 179.97438 * 12 10 9 14 14 Si 1.86805 * 120.00009 * 359.97438 * 12 10 9 15 15 H 1.48495 * 109.46770 * 89.99924 * 14 12 10 16 16 H 1.48501 * 109.46849 * 210.00220 * 14 12 10 17 17 H 1.48496 * 109.47068 * 330.00164 * 14 12 10 18 18 C 1.50700 * 109.47555 * 60.00122 * 5 3 2 19 19 C 1.38175 * 119.94453 * 79.72040 * 18 5 3 20 20 C 1.38773 * 120.05575 * 179.77177 * 19 18 5 21 21 O 1.35896 * 120.02974 * 180.23724 * 20 19 18 22 22 C 1.42897 * 116.99956 * 180.29957 * 21 20 19 23 23 C 1.38642 * 119.94299 * 0.53382 * 20 19 18 24 24 C 1.38630 * 119.88784 * 359.72047 * 23 20 19 25 25 O 1.35903 * 120.02605 * 179.97438 * 24 23 20 26 26 C 1.42901 * 116.99615 * 0.03166 * 25 24 23 27 27 C 1.38179 * 119.94680 * 260.00746 * 18 5 3 28 28 H 1.09002 * 109.47379 * 59.99613 * 1 2 3 29 29 H 1.09001 * 109.46782 * 299.99696 * 1 2 3 30 30 H 1.09004 * 109.47085 * 179.97438 * 1 2 3 31 31 H 1.00899 * 111.00331 * 208.95061 * 7 5 3 32 32 H 1.08997 * 109.47108 * 300.00180 * 8 7 5 33 33 H 1.08999 * 109.46867 * 60.00438 * 8 7 5 34 34 H 1.08997 * 109.47323 * 300.00025 * 9 8 7 35 35 H 1.08999 * 109.46976 * 60.00483 * 9 8 7 36 36 H 0.96991 * 120.00067 * 179.97438 * 13 12 10 37 37 H 1.08005 * 119.97075 * 0.02562 * 19 18 5 38 38 H 1.09004 * 109.47421 * 179.97438 * 22 21 20 39 39 H 1.09008 * 109.47277 * 299.99415 * 22 21 20 40 40 H 1.09005 * 109.47845 * 59.99725 * 22 21 20 41 41 H 1.07994 * 120.05220 * 179.74932 * 23 20 19 42 42 H 1.08998 * 109.46950 * 299.99175 * 26 25 24 43 43 H 1.08998 * 109.47405 * 59.99740 * 26 25 24 44 44 H 1.09000 * 109.46783 * 179.97438 * 26 25 24 45 45 H 1.08000 * 119.96900 * 359.96968 * 27 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9565 0.7806 0.8892 7 7 3.9828 2.6836 0.0002 8 6 4.0180 3.2215 1.3667 9 6 4.4545 4.6874 1.3267 10 6 4.4900 5.2394 2.7285 11 1 4.2278 4.6077 3.5644 12 6 4.8570 6.5508 2.9439 13 7 4.8875 7.0327 4.1673 14 14 5.3111 7.6432 1.4982 15 1 4.0936 8.3271 0.9931 16 1 6.3029 8.6577 1.9367 17 1 5.8976 6.8131 0.4156 18 6 4.1047 0.5921 -1.2314 19 6 4.0982 1.2524 -2.4451 20 6 4.5978 0.6276 -3.5790 21 8 4.5956 1.2793 -4.7715 22 6 5.1191 0.5729 -5.8979 23 6 5.0936 -0.6645 -3.4955 24 6 5.0942 -1.3268 -2.2776 25 8 5.5791 -2.5935 -2.1927 26 6 6.0730 -3.1812 -3.3979 27 6 4.5987 -0.6956 -1.1455 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 4.8756 2.7969 -0.4561 32 1 3.0252 3.1504 1.8108 33 1 4.7256 2.6475 1.9650 34 1 5.4472 4.7589 0.8824 35 1 3.7465 5.2611 0.7286 36 1 5.1461 7.9551 4.3188 37 1 3.7077 2.2573 -2.5105 38 1 5.0581 1.2051 -6.7838 39 1 6.1601 0.3098 -5.7100 40 1 4.5383 -0.3353 -6.0594 41 1 5.4791 -1.1539 -4.3776 42 1 5.2724 -3.2230 -4.1364 43 1 6.8943 -2.5787 -3.7860 44 1 6.4295 -4.1902 -3.1906 45 1 4.5989 -1.2111 -0.1965 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273038675.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:13 Heat of formation + Delta-G solvation = -123.488750 kcal Electronic energy + Delta-G solvation = -27525.270954 eV Core-core repulsion = 23509.395735 eV Total energy + Delta-G solvation = -4015.875219 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.96222 -40.19587 -39.06268 -37.70979 -36.36470 -35.35806 -33.06027 -31.51569 -30.56335 -29.40007 -28.39371 -28.02773 -26.89462 -25.95801 -23.70474 -22.57967 -22.08599 -20.42515 -20.34295 -18.80528 -17.48895 -17.14993 -16.81014 -16.52734 -16.25042 -16.20555 -16.06862 -15.94875 -15.77046 -15.10345 -14.95251 -14.24411 -14.21678 -13.73720 -13.47900 -13.14486 -13.08927 -12.85574 -12.72762 -12.49532 -12.42920 -12.02633 -11.94273 -11.90024 -11.47954 -11.41851 -11.34312 -10.99181 -10.88946 -10.64784 -10.31090 -10.08981 -9.79336 -9.74328 -9.18126 -8.83662 -8.48451 -8.18207 -8.13007 -5.99337 -3.97495 0.98163 1.29330 2.41707 2.73005 2.94416 2.99688 3.38658 3.44820 3.49949 3.50219 4.34276 4.51646 4.53988 4.57738 4.68258 4.76541 4.80525 4.80859 4.94801 4.97006 4.98558 5.08470 5.11970 5.14111 5.14749 5.22236 5.32829 5.35596 5.53372 5.58637 5.98374 6.05103 6.15792 6.19674 6.30973 6.38290 6.49763 6.79448 6.89321 7.02383 7.24325 7.39549 7.50862 7.69004 7.87983 8.02381 8.57548 9.04453 9.63021 11.13999 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.011624 B = 0.003333 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.185076 B = 8398.435129 C = 9386.588407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.362 6.362 3 C 0.464 3.536 4 O -0.470 6.470 5 C 0.143 3.857 6 H 0.094 0.906 7 N -0.669 5.669 8 C 0.073 3.927 9 C -0.008 4.008 10 C -0.519 4.519 11 H 0.071 0.929 12 C 0.067 3.933 13 N -0.905 5.905 14 Si 0.882 3.118 15 H -0.276 1.276 16 H -0.289 1.289 17 H -0.264 1.264 18 C -0.015 4.015 19 C -0.160 4.160 20 C 0.163 3.837 21 O -0.310 6.310 22 C 0.027 3.973 23 C -0.292 4.292 24 C 0.162 3.838 25 O -0.312 6.312 26 C 0.027 3.973 27 C -0.163 4.163 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.097 0.903 31 H 0.353 0.647 32 H 0.069 0.931 33 H 0.028 0.972 34 H 0.015 0.985 35 H 0.024 0.976 36 H 0.263 0.737 37 H 0.146 0.854 38 H 0.101 0.899 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.134 0.866 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.101 0.899 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.212 -22.872 -19.826 30.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.279 6.279 3 C 0.303 3.697 4 O -0.353 6.353 5 C 0.031 3.969 6 H 0.111 0.889 7 N -0.304 5.304 8 C -0.055 4.055 9 C -0.046 4.046 10 C -0.558 4.558 11 H 0.089 0.911 12 C -0.134 4.134 13 N -0.544 5.544 14 Si 0.710 3.290 15 H -0.202 1.202 16 H -0.216 1.216 17 H -0.189 1.189 18 C -0.016 4.016 19 C -0.179 4.179 20 C 0.117 3.883 21 O -0.223 6.223 22 C -0.068 4.068 23 C -0.311 4.311 24 C 0.116 3.884 25 O -0.225 6.225 26 C -0.068 4.068 27 C -0.182 4.182 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.116 0.884 31 H 0.175 0.825 32 H 0.088 0.912 33 H 0.046 0.954 34 H 0.033 0.967 35 H 0.043 0.957 36 H 0.072 0.928 37 H 0.164 0.836 38 H 0.119 0.881 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.151 0.849 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.119 0.881 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.092 -22.084 -19.735 29.637 hybrid contribution 0.975 0.066 -0.729 1.219 sum -0.117 -22.018 -20.464 30.060 Atomic orbital electron populations 1.23204 0.76754 1.03223 1.02546 1.86496 1.23022 1.33740 1.84678 1.23516 0.91405 0.81428 0.73343 1.90700 1.66061 1.36051 1.42469 1.19804 0.88337 0.92185 0.96558 0.88903 1.60195 1.36202 1.11834 1.22147 1.22121 1.00677 0.97704 0.84958 1.19520 0.96052 0.90997 0.97987 1.21039 1.45968 0.97017 0.91769 0.91091 1.24991 0.94902 0.97888 0.95608 1.69914 1.48897 1.15505 1.20050 0.86735 0.78609 0.80414 0.83277 1.20214 1.21566 1.18906 1.18998 0.96428 0.92936 0.93205 1.20314 1.05753 1.02485 0.89392 1.18650 0.93991 0.89931 0.85719 1.86134 1.78691 1.42271 1.15205 1.23063 0.98341 0.97979 0.87414 1.21257 1.14186 0.97073 0.98595 1.18554 0.93029 0.83748 0.93053 1.86099 1.75594 1.26016 1.34836 1.23056 0.98520 0.98792 0.86412 1.20142 1.05372 0.94743 0.97972 0.92109 0.91891 0.88439 0.82542 0.91244 0.95364 0.96700 0.95737 0.92758 0.83578 0.88068 0.92699 0.92809 0.84877 0.92754 0.92703 0.88101 0.84505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.56 101.05 1.07 1.47 16 2 O -0.36 -5.05 10.48 -39.26 -0.41 -5.46 16 3 C 0.46 7.58 7.11 36.00 0.26 7.84 16 4 O -0.47 -9.27 15.67 -18.75 -0.29 -9.56 16 5 C 0.14 2.13 2.72 -70.02 -0.19 1.94 16 6 H 0.09 1.26 7.66 -51.92 -0.40 0.86 16 7 N -0.67 -11.67 5.23 -109.18 -0.57 -12.25 16 8 C 0.07 1.51 5.32 -3.82 -0.02 1.49 16 9 C -0.01 -0.19 4.30 -27.88 -0.12 -0.31 16 10 C -0.52 -15.18 9.66 -34.44 -0.33 -15.52 16 11 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 12 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 13 N -0.90 -28.47 13.96 55.43 0.77 -27.69 16 14 Si 0.88 22.43 27.47 -169.99 -4.67 17.76 16 15 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 16 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 17 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 18 C -0.01 -0.20 4.63 -104.67 -0.48 -0.68 16 19 C -0.16 -2.18 8.94 -39.41 -0.35 -2.54 16 20 C 0.16 1.98 6.68 -39.23 -0.26 1.72 16 21 O -0.31 -3.55 10.50 -19.41 -0.20 -3.75 16 22 C 0.03 0.18 9.81 101.05 0.99 1.18 16 23 C -0.29 -3.03 8.02 -39.29 -0.32 -3.35 16 24 C 0.16 1.82 6.68 -39.24 -0.26 1.56 16 25 O -0.31 -3.16 10.50 -19.43 -0.20 -3.37 16 26 C 0.03 0.16 9.81 101.05 0.99 1.15 16 27 C -0.16 -1.97 9.60 -39.41 -0.38 -2.34 16 28 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 29 H 0.06 0.70 8.13 -51.93 -0.42 0.27 16 30 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.35 5.67 8.00 -39.29 -0.31 5.36 16 32 H 0.07 1.54 7.62 -51.93 -0.40 1.15 16 33 H 0.03 0.56 8.05 -51.93 -0.42 0.14 16 34 H 0.01 0.36 7.20 -51.93 -0.37 -0.02 16 35 H 0.02 0.63 7.57 -51.93 -0.39 0.23 16 36 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 37 H 0.15 2.17 7.72 -52.48 -0.41 1.76 16 38 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.05 0.31 7.66 -51.92 -0.40 -0.09 16 40 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 41 H 0.13 1.02 4.54 -52.49 -0.24 0.78 16 42 H 0.05 0.27 7.66 -51.93 -0.40 -0.13 16 43 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 44 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.14 1.49 8.03 -52.49 -0.42 1.07 16 LS Contribution 377.91 15.07 5.70 5.70 Total: -1.00 -35.62 377.91 -6.04 -41.66 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -6.65 Total: 1.45 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: 0.49 Total: -4.49 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.20 Total: -39.94 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -1.11 Total: -22.14 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.67 Total: 17.76 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.62 -6.04 -41.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273038675.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.824 kcal (2) G-P(sol) polarization free energy of solvation -35.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds