Wall clock time and date at job start Tue Mar 31 2020 14:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 116.99983 * 2 1 4 4 O 1.20822 * 120.00142 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00053 * 180.02562 * 3 2 1 6 6 H 1.09008 * 109.47488 * 300.00148 * 5 3 2 7 7 N 1.46896 * 109.47313 * 180.02562 * 5 3 2 8 8 C 1.46905 * 111.00191 * 84.99729 * 7 5 3 9 9 C 1.53004 * 109.46990 * 180.02562 * 8 7 5 10 10 C 1.50699 * 109.46954 * 179.97438 * 9 8 7 11 11 H 1.08003 * 119.99870 * 0.02562 * 10 9 8 12 12 C 1.37872 * 120.00064 * 180.02562 * 10 9 8 13 13 N 1.31518 * 120.00280 * 179.97438 * 12 10 9 14 14 Si 1.86805 * 120.00009 * 359.97438 * 12 10 9 15 15 H 1.48495 * 109.46770 * 89.99924 * 14 12 10 16 16 H 1.48501 * 109.46849 * 210.00220 * 14 12 10 17 17 H 1.48496 * 109.47068 * 330.00164 * 14 12 10 18 18 C 1.50700 * 109.47555 * 60.00122 * 5 3 2 19 19 C 1.38175 * 119.94453 * 79.72040 * 18 5 3 20 20 C 1.38773 * 120.05575 * 179.77177 * 19 18 5 21 21 O 1.35896 * 120.02974 * 180.23724 * 20 19 18 22 22 C 1.42897 * 116.99956 * 180.29957 * 21 20 19 23 23 C 1.38642 * 119.94299 * 0.53382 * 20 19 18 24 24 C 1.38630 * 119.88784 * 359.72047 * 23 20 19 25 25 O 1.35903 * 120.02605 * 179.97438 * 24 23 20 26 26 C 1.42901 * 116.99615 * 0.03166 * 25 24 23 27 27 C 1.38179 * 119.94680 * 260.00746 * 18 5 3 28 28 H 1.09002 * 109.47379 * 59.99613 * 1 2 3 29 29 H 1.09001 * 109.46782 * 299.99696 * 1 2 3 30 30 H 1.09004 * 109.47085 * 179.97438 * 1 2 3 31 31 H 1.00899 * 111.00331 * 208.95061 * 7 5 3 32 32 H 1.08997 * 109.47108 * 300.00180 * 8 7 5 33 33 H 1.08999 * 109.46867 * 60.00438 * 8 7 5 34 34 H 1.08997 * 109.47323 * 300.00025 * 9 8 7 35 35 H 1.08999 * 109.46976 * 60.00483 * 9 8 7 36 36 H 0.96991 * 120.00067 * 179.97438 * 13 12 10 37 37 H 1.08005 * 119.97075 * 0.02562 * 19 18 5 38 38 H 1.09004 * 109.47421 * 179.97438 * 22 21 20 39 39 H 1.09008 * 109.47277 * 299.99415 * 22 21 20 40 40 H 1.09005 * 109.47845 * 59.99725 * 22 21 20 41 41 H 1.07994 * 120.05220 * 179.74932 * 23 20 19 42 42 H 1.08998 * 109.46950 * 299.99175 * 26 25 24 43 43 H 1.08998 * 109.47405 * 59.99740 * 26 25 24 44 44 H 1.09000 * 109.46783 * 179.97438 * 26 25 24 45 45 H 1.08000 * 119.96900 * 359.96968 * 27 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9565 0.7806 0.8892 7 7 3.9828 2.6836 0.0002 8 6 4.0180 3.2215 1.3667 9 6 4.4545 4.6874 1.3267 10 6 4.4900 5.2394 2.7285 11 1 4.2278 4.6077 3.5644 12 6 4.8570 6.5508 2.9439 13 7 4.8875 7.0327 4.1673 14 14 5.3111 7.6432 1.4982 15 1 4.0936 8.3271 0.9931 16 1 6.3029 8.6577 1.9367 17 1 5.8976 6.8131 0.4156 18 6 4.1047 0.5921 -1.2314 19 6 4.0982 1.2524 -2.4451 20 6 4.5978 0.6276 -3.5790 21 8 4.5956 1.2793 -4.7715 22 6 5.1191 0.5729 -5.8979 23 6 5.0936 -0.6645 -3.4955 24 6 5.0942 -1.3268 -2.2776 25 8 5.5791 -2.5935 -2.1927 26 6 6.0730 -3.1812 -3.3979 27 6 4.5987 -0.6956 -1.1455 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 4.8756 2.7969 -0.4561 32 1 3.0252 3.1504 1.8108 33 1 4.7256 2.6475 1.9650 34 1 5.4472 4.7589 0.8824 35 1 3.7465 5.2611 0.7286 36 1 5.1461 7.9551 4.3188 37 1 3.7077 2.2573 -2.5105 38 1 5.0581 1.2051 -6.7838 39 1 6.1601 0.3098 -5.7100 40 1 4.5383 -0.3353 -6.0594 41 1 5.4791 -1.1539 -4.3776 42 1 5.2724 -3.2230 -4.1364 43 1 6.8943 -2.5787 -3.7860 44 1 6.4295 -4.1902 -3.1906 45 1 4.5989 -1.2111 -0.1965 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273038675.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:12 Heat of formation + Delta-G solvation = -148.690073 kcal Electronic energy + Delta-G solvation = -27526.363765 eV Core-core repulsion = 23509.395735 eV Total energy + Delta-G solvation = -4016.968030 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.93899 -41.27037 -39.79323 -38.77512 -37.52793 -36.76619 -35.01861 -33.08521 -31.38378 -30.82669 -29.38450 -28.75130 -27.48830 -27.24787 -25.42223 -23.49073 -23.14116 -22.20195 -21.46347 -19.72574 -18.98382 -18.59392 -17.94429 -17.67866 -17.30491 -17.05375 -16.93419 -16.87337 -16.55110 -16.38848 -16.16763 -15.65354 -15.46701 -15.11866 -14.70271 -14.63330 -14.30408 -14.07315 -13.78960 -13.59874 -13.33357 -13.19210 -13.06999 -12.90355 -12.78530 -12.46178 -12.25874 -12.16844 -12.05400 -11.90415 -11.78624 -11.77130 -11.67192 -11.41807 -11.28632 -10.76878 -9.71011 -9.55358 -9.04738 -8.29638 -6.33938 0.07298 0.40174 1.16932 1.37681 1.39103 1.51617 1.62248 2.22530 2.31287 2.37228 2.58150 3.06084 3.18362 3.43025 3.86351 3.89444 3.97449 4.04528 4.04997 4.31362 4.31639 4.32209 4.33538 4.37055 4.40663 4.41061 4.44173 4.46626 4.64075 4.68445 4.73146 4.76765 4.92911 5.14123 5.15750 5.18617 5.32253 5.41750 5.43798 5.47893 5.62381 5.87582 6.18584 6.22389 6.36050 6.48363 6.73241 6.78545 7.30609 8.87033 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.011624 B = 0.003333 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.185076 B = 8398.435129 C = 9386.588407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.359 6.359 3 C 0.466 3.534 4 O -0.513 6.513 5 C 0.144 3.856 6 H 0.110 0.890 7 N -0.673 5.673 8 C 0.089 3.911 9 C -0.002 4.002 10 C -0.532 4.532 11 H 0.033 0.967 12 C 0.007 3.993 13 N -0.950 5.950 14 Si 0.952 3.048 15 H -0.273 1.273 16 H -0.281 1.281 17 H -0.244 1.244 18 C -0.018 4.018 19 C -0.181 4.181 20 C 0.160 3.840 21 O -0.332 6.332 22 C 0.016 3.984 23 C -0.281 4.281 24 C 0.163 3.837 25 O -0.325 6.325 26 C 0.015 3.985 27 C -0.170 4.170 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.137 0.863 31 H 0.362 0.638 32 H 0.048 0.952 33 H 0.036 0.964 34 H 0.027 0.973 35 H 0.016 0.984 36 H 0.267 0.733 37 H 0.125 0.875 38 H 0.118 0.882 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.164 0.836 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.121 0.879 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.944 -24.926 -22.774 33.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.275 6.275 3 C 0.307 3.693 4 O -0.400 6.400 5 C 0.033 3.967 6 H 0.127 0.873 7 N -0.308 5.308 8 C -0.040 4.040 9 C -0.039 4.039 10 C -0.571 4.571 11 H 0.052 0.948 12 C -0.190 4.190 13 N -0.591 5.591 14 Si 0.776 3.224 15 H -0.198 1.198 16 H -0.206 1.206 17 H -0.168 1.168 18 C -0.018 4.018 19 C -0.200 4.200 20 C 0.114 3.886 21 O -0.246 6.246 22 C -0.078 4.078 23 C -0.301 4.301 24 C 0.117 3.883 25 O -0.238 6.238 26 C -0.079 4.079 27 C -0.189 4.189 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.155 0.845 31 H 0.185 0.815 32 H 0.066 0.934 33 H 0.054 0.946 34 H 0.046 0.954 35 H 0.034 0.966 36 H 0.076 0.924 37 H 0.143 0.857 38 H 0.136 0.864 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.181 0.819 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.139 0.861 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.074 -24.193 -22.709 33.181 hybrid contribution 0.579 0.524 0.151 0.795 sum 0.653 -23.668 -22.557 32.702 Atomic orbital electron populations 1.23532 0.74971 1.05701 1.02237 1.86486 1.24764 1.32289 1.83954 1.23818 0.91975 0.81441 0.72051 1.90679 1.67061 1.37471 1.44763 1.19828 0.87698 0.90799 0.98379 0.87305 1.59965 1.36903 1.14043 1.19916 1.21730 0.99430 0.95837 0.86957 1.19390 0.96474 0.93152 0.94931 1.21367 1.45579 0.97064 0.93056 0.94819 1.25967 0.94801 0.99573 0.98689 1.70057 1.50214 1.16246 1.22558 0.85626 0.78594 0.78436 0.79775 1.19804 1.20631 1.16773 1.18736 0.97458 0.93485 0.92162 1.20221 1.07308 1.02010 0.90508 1.18677 0.93770 0.90485 0.85701 1.86112 1.79049 1.43557 1.15849 1.23410 0.99222 0.98836 0.86372 1.21482 1.12966 0.96186 0.99425 1.18613 0.92399 0.84354 0.92920 1.86095 1.75387 1.25207 1.37154 1.23411 0.99284 0.99772 0.85440 1.20229 1.05420 0.94294 0.98976 0.92319 0.92408 0.84530 0.81535 0.93374 0.94561 0.95447 0.96568 0.92408 0.85675 0.86399 0.91307 0.91300 0.81912 0.91472 0.91562 0.86058 0.83658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.56 113.37 1.20 1.80 16 2 O -0.36 -9.80 10.48 -51.42 -0.54 -10.34 16 3 C 0.47 15.42 7.11 71.24 0.51 15.93 16 4 O -0.51 -20.91 15.67 21.98 0.34 -20.57 16 5 C 0.14 4.30 2.72 43.42 0.12 4.42 16 6 H 0.11 2.89 7.66 -2.38 -0.02 2.87 16 7 N -0.67 -23.65 5.23 -499.34 -2.61 -26.26 16 8 C 0.09 3.75 5.32 86.30 0.46 4.21 16 9 C 0.00 -0.08 4.30 29.85 0.13 0.05 16 10 C -0.53 -31.99 9.66 25.60 0.25 -31.74 16 11 H 0.03 2.20 7.99 -2.91 -0.02 2.18 16 12 C 0.01 0.40 5.47 84.65 0.46 0.86 16 13 N -0.95 -61.24 13.96 21.45 0.30 -60.94 16 14 Si 0.95 46.27 27.47 68.60 1.88 48.16 16 15 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 16 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 17 H -0.24 -10.99 6.54 99.48 0.65 -10.34 16 18 C -0.02 -0.46 4.63 -19.89 -0.09 -0.55 16 19 C -0.18 -4.90 8.94 22.38 0.20 -4.70 16 20 C 0.16 3.66 6.68 22.49 0.15 3.81 16 21 O -0.33 -7.10 10.50 -92.38 -0.97 -8.07 16 22 C 0.02 0.17 9.81 113.37 1.11 1.28 16 23 C -0.28 -5.09 8.02 22.46 0.18 -4.91 16 24 C 0.16 3.29 6.68 22.49 0.15 3.44 16 25 O -0.33 -5.64 10.50 -92.46 -0.97 -6.61 16 26 C 0.01 0.12 9.81 113.37 1.11 1.23 16 27 C -0.17 -3.85 9.60 22.38 0.21 -3.63 16 28 H 0.06 1.26 8.13 -2.39 -0.02 1.24 16 29 H 0.06 1.28 8.13 -2.39 -0.02 1.26 16 30 H 0.14 1.75 8.14 -2.38 -0.02 1.73 16 31 H 0.36 11.53 8.00 -89.69 -0.72 10.82 16 32 H 0.05 2.22 7.62 -2.39 -0.02 2.20 16 33 H 0.04 1.45 8.05 -2.39 -0.02 1.43 16 34 H 0.03 1.29 7.20 -2.39 -0.02 1.27 16 35 H 0.02 0.82 7.57 -2.39 -0.02 0.80 16 36 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 37 H 0.13 3.85 7.72 -2.91 -0.02 3.82 16 38 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.07 0.55 7.66 -2.38 -0.02 0.53 16 40 H 0.07 0.53 7.66 -2.38 -0.02 0.51 16 41 H 0.16 1.83 4.54 -2.91 -0.01 1.82 16 42 H 0.07 0.39 7.66 -2.39 -0.02 0.38 16 43 H 0.07 0.41 7.66 -2.39 -0.02 0.39 16 44 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.15 2.94 8.03 -2.91 -0.02 2.91 16 Total: -1.00 -79.38 377.91 3.82 -75.56 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 0.23 Total: 17.58 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: 6.15 Total: -8.50 kcal Atomic # 7 Polarization: -84.88 SS G_CDS: -2.31 Total: -87.20 kcal Atomic # 8 Polarization: -43.45 SS G_CDS: -2.13 Total: -45.59 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 1.88 Total: 48.16 kcal Total: -79.38 3.82 -75.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273038675.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.133 kcal (2) G-P(sol) polarization free energy of solvation -79.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds