Wall clock time and date at job start Tue Mar 31 2020 14:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40360 * 126.64652 * 2 1 4 4 C 1.35129 * 107.11439 * 179.83816 * 3 2 1 5 5 O 1.33926 * 108.76801 * 0.43194 * 4 3 2 6 6 C 1.34911 * 109.38448 * 359.72508 * 5 4 3 7 7 C 1.46659 * 125.99073 * 179.97438 * 6 5 4 8 8 O 1.21690 * 120.00216 * 180.02562 * 7 6 5 9 9 N 1.34779 * 119.99553 * 0.02689 * 7 6 5 10 10 C 1.46506 * 119.99677 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47014 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47033 * 180.02562 * 11 10 9 13 13 N 1.46503 * 109.46985 * 180.02562 * 12 11 10 14 14 C 1.34780 * 120.00129 * 180.02562 * 13 12 11 15 15 O 1.21588 * 119.99673 * 359.97438 * 14 13 12 16 16 N 1.34770 * 120.00441 * 179.97438 * 14 13 12 17 17 C 1.46494 * 120.00266 * 179.97438 * 16 14 13 18 18 C 1.53005 * 109.47424 * 180.02562 * 17 16 14 19 19 C 1.50699 * 109.47416 * 180.02562 * 18 17 16 20 20 H 1.08004 * 119.99796 * 0.02562 * 19 18 17 21 21 C 1.37874 * 119.99928 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00242 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00008 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47214 * 60.00070 * 23 21 19 25 25 H 1.48502 * 109.47500 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47075 * 300.00459 * 23 21 19 27 27 H 1.09002 * 109.47152 * 269.68325 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.68425 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.68406 * 1 2 3 30 30 H 1.08003 * 126.44292 * 0.02562 * 3 2 1 31 31 H 1.08007 * 125.61463 * 180.16644 * 4 3 2 32 32 H 0.97000 * 120.00199 * 359.97438 * 9 7 6 33 33 H 1.08996 * 109.47025 * 300.00112 * 10 9 7 34 34 H 1.08997 * 109.47170 * 60.00200 * 10 9 7 35 35 H 1.08998 * 109.47120 * 300.00410 * 11 10 9 36 36 H 1.08997 * 109.47050 * 60.00051 * 11 10 9 37 37 H 1.09007 * 109.47308 * 299.99399 * 12 11 10 38 38 H 1.08997 * 109.47377 * 59.99986 * 12 11 10 39 39 H 0.96994 * 120.00307 * 359.97438 * 13 12 11 40 40 H 0.97001 * 119.99631 * 0.02562 * 16 14 13 41 41 H 1.09002 * 109.47654 * 300.00487 * 17 16 14 42 42 H 1.09001 * 109.47037 * 60.00777 * 17 16 14 43 43 H 1.09002 * 109.47081 * 300.00811 * 18 17 16 44 44 H 1.09001 * 109.46401 * 60.00361 * 18 17 16 45 45 H 0.96996 * 120.00570 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6744 0.0036 5 8 3.6005 -0.6648 -0.0037 6 6 2.3220 -1.0955 -0.0060 7 6 1.8842 -2.4952 -0.0142 8 8 0.6968 -2.7614 -0.0161 9 7 2.7971 -3.4868 -0.0197 10 6 2.3598 -4.8850 -0.0273 11 6 3.5843 -5.8023 -0.0317 12 6 3.1276 -7.2625 -0.0403 13 7 4.3001 -8.1408 -0.0439 14 6 4.1397 -9.4790 -0.0521 15 8 3.0218 -9.9572 -0.0559 16 7 5.2182 -10.2871 -0.0559 17 6 5.0438 -11.7416 -0.0642 18 6 6.4154 -12.4198 -0.0665 19 6 6.2359 -13.9160 -0.0756 20 1 5.2429 -14.3408 -0.0798 21 6 7.3394 -14.7426 -0.0796 22 7 8.5485 -14.2254 -0.0750 23 14 7.1170 -16.5973 -0.0917 24 1 6.3644 -16.9977 -1.3076 25 1 8.4482 -17.2555 -0.0938 26 1 6.3616 -17.0131 1.1173 27 1 -0.3633 -0.0057 1.0277 28 1 -0.3633 -0.8872 -0.5187 29 1 -0.3633 0.8928 -0.5089 30 1 2.0306 2.1595 0.0004 31 1 4.5046 1.2916 0.0072 32 1 3.7436 -3.2746 -0.0186 33 1 1.7610 -5.0832 0.8616 34 1 1.7609 -5.0735 -0.9183 35 1 4.1835 -5.6041 -0.9204 36 1 4.1828 -5.6137 0.8595 37 1 2.5282 -7.4610 0.8482 38 1 2.5293 -7.4508 -0.9318 39 1 5.1919 -7.7594 -0.0412 40 1 6.1101 -9.9055 -0.0524 41 1 4.4897 -12.0462 0.8237 42 1 4.4911 -12.0361 -0.9563 43 1 6.9698 -12.1152 -0.9541 44 1 6.9677 -12.1251 0.8259 45 1 9.3249 -14.8069 -0.0782 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273555219.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:31 Heat of formation + Delta-G solvation = -71.513416 kcal Electronic energy + Delta-G solvation = -25104.918678 eV Core-core repulsion = 21123.590030 eV Total energy + Delta-G solvation = -3981.328648 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.20114 -39.93852 -39.54392 -36.63903 -35.13351 -34.62266 -34.24940 -32.85404 -31.79531 -30.73779 -29.40220 -28.12649 -25.94612 -24.45908 -23.16006 -22.21332 -21.68948 -21.03404 -20.55216 -20.33558 -18.66027 -17.87244 -16.95572 -16.71181 -16.50302 -16.30842 -16.26579 -15.58924 -15.27189 -14.71272 -14.54267 -14.50831 -14.08586 -13.74014 -13.59982 -13.54042 -13.49386 -13.39100 -13.01439 -12.70121 -12.41528 -12.27163 -12.24120 -11.96725 -11.47108 -11.18736 -11.00266 -10.64286 -10.59024 -10.30254 -10.21275 -9.95849 -9.66404 -9.55208 -9.27025 -9.07500 -9.04279 -8.47624 -8.24649 -6.08449 -4.11100 0.56566 1.83423 2.17554 2.66715 2.71465 3.08728 3.32341 3.35948 3.39907 3.58971 4.14426 4.27286 4.34831 4.40494 4.50298 4.55246 4.62966 4.81039 4.98188 5.03340 5.15473 5.25215 5.26077 5.28681 5.30362 5.45574 5.55463 5.65933 5.75384 5.76277 5.84124 5.97872 6.30063 6.32499 6.40716 6.56046 6.78533 6.96840 7.00172 7.21900 7.57120 7.61696 7.63898 7.90586 8.26470 8.42944 8.93204 8.99651 9.53635 11.03168 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.041655 B = 0.001377 C = 0.001335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.030679 B =20335.100223 C =20965.474297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.083 4.083 3 C -0.226 4.226 4 C -0.001 4.001 5 O -0.165 6.165 6 C -0.090 4.090 7 C 0.604 3.396 8 O -0.515 6.515 9 N -0.720 5.720 10 C 0.122 3.878 11 C -0.144 4.144 12 C 0.144 3.856 13 N -0.755 5.755 14 C 0.698 3.302 15 O -0.597 6.597 16 N -0.738 5.738 17 C 0.140 3.860 18 C 0.013 3.987 19 C -0.522 4.522 20 H 0.059 0.941 21 C 0.059 3.941 22 N -0.895 5.895 23 Si 0.897 3.103 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.276 1.276 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.157 0.843 31 H 0.211 0.789 32 H 0.406 0.594 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.394 0.606 40 H 0.393 0.607 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.022 0.978 44 H 0.022 0.978 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.232 34.522 0.170 35.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.086 4.086 3 C -0.245 4.245 4 C -0.071 4.071 5 O -0.060 6.060 6 C -0.142 4.142 7 C 0.390 3.610 8 O -0.393 6.393 9 N -0.371 5.371 10 C -0.002 4.002 11 C -0.182 4.182 12 C 0.019 3.981 13 N -0.412 5.412 14 C 0.397 3.603 15 O -0.476 6.476 16 N -0.392 5.392 17 C 0.017 3.983 18 C -0.025 4.025 19 C -0.560 4.560 20 H 0.077 0.923 21 C -0.142 4.142 22 N -0.534 5.534 23 Si 0.725 3.275 24 H -0.201 1.201 25 H -0.213 1.213 26 H -0.201 1.201 27 H 0.094 0.906 28 H 0.106 0.894 29 H 0.086 0.914 30 H 0.174 0.826 31 H 0.228 0.772 32 H 0.241 0.759 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.227 0.773 40 H 0.226 0.774 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.040 0.960 44 H 0.040 0.960 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.712 33.534 0.162 34.912 hybrid contribution 1.452 -0.196 0.013 1.465 sum -8.260 33.338 0.175 34.346 Atomic orbital electron populations 1.20458 0.88090 1.03736 1.03070 1.20689 0.97777 0.90995 0.99179 1.21788 0.92455 1.00285 1.09995 1.24398 1.00058 0.80511 1.02159 1.84049 1.28283 1.22811 1.70883 1.21824 0.81585 0.94750 1.16029 1.16487 0.85714 0.81821 0.76942 1.90876 1.15668 1.82330 1.50422 1.45867 1.10037 1.06285 1.74960 1.21311 0.96697 0.78563 1.03602 1.21982 0.98076 0.94406 1.03756 1.20914 0.87854 0.86497 1.02852 1.45065 1.09254 1.04844 1.82033 1.16054 0.85343 0.80784 0.78071 1.90898 1.23514 1.74918 1.58264 1.45530 1.07012 1.08162 1.78482 1.21598 1.01092 0.74953 1.00680 1.19324 0.89962 0.95376 0.97790 1.21022 0.92944 0.90696 1.51367 0.92253 1.24986 0.95144 0.99128 0.94981 1.69942 0.97636 1.35411 1.50400 0.86568 0.77196 0.84938 0.78801 1.20101 1.21264 1.20105 0.90644 0.89390 0.91362 0.82567 0.77213 0.75919 0.90431 0.90430 0.90347 0.90339 0.91366 0.91362 0.77256 0.77405 0.92766 0.92759 0.95978 0.95977 0.92825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.70 9.82 36.01 0.35 -0.35 16 2 C -0.08 -0.67 6.20 -104.43 -0.65 -1.32 16 3 C -0.23 -1.29 10.83 -39.89 -0.43 -1.72 16 4 C 0.00 -0.01 12.08 29.63 0.36 0.35 16 5 O -0.16 -1.16 10.40 5.02 0.05 -1.11 16 6 C -0.09 -0.79 7.13 -36.80 -0.26 -1.05 16 7 C 0.60 5.85 7.79 -12.86 -0.10 5.75 16 8 O -0.52 -6.40 14.74 5.20 0.08 -6.33 16 9 N -0.72 -5.16 5.55 -61.62 -0.34 -5.50 16 10 C 0.12 0.87 5.67 -4.04 -0.02 0.84 16 11 C -0.14 -0.87 5.44 -26.73 -0.15 -1.02 16 12 C 0.14 1.43 5.67 -4.04 -0.02 1.40 16 13 N -0.75 -8.93 5.56 -65.23 -0.36 -9.29 16 14 C 0.70 12.09 8.57 -86.92 -0.74 11.34 16 15 O -0.60 -12.91 16.34 5.29 0.09 -12.83 16 16 N -0.74 -12.96 5.56 -65.23 -0.36 -13.32 16 17 C 0.14 3.01 5.61 -4.04 -0.02 2.99 16 18 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 19 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 20 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 21 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 22 N -0.90 -26.08 13.29 55.43 0.74 -25.35 16 23 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.09 0.78 6.44 -51.93 -0.33 0.45 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.16 0.53 8.06 -52.48 -0.42 0.10 16 31 H 0.21 0.11 8.06 -52.48 -0.42 -0.31 16 32 H 0.41 2.08 8.23 -40.82 -0.34 1.74 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.39 3.44 8.49 -40.82 -0.35 3.10 16 40 H 0.39 5.83 8.49 -40.82 -0.35 5.49 16 41 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 388.27 15.07 5.85 5.85 Total: -1.00 -35.92 388.27 -8.35 -44.27 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -6.82 Total: 3.07 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: -2.24 Total: 4.15 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: -0.33 Total: -53.46 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: 0.22 Total: -20.26 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.92 -8.35 -44.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273555219.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.244 kcal (2) G-P(sol) polarization free energy of solvation -35.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds