Wall clock time and date at job start Tue Mar 31 2020 14:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40360 * 126.64652 * 2 1 4 4 C 1.35129 * 107.11439 * 179.83816 * 3 2 1 5 5 O 1.33926 * 108.76801 * 0.43194 * 4 3 2 6 6 C 1.34911 * 109.38448 * 359.72508 * 5 4 3 7 7 C 1.46659 * 125.99073 * 179.97438 * 6 5 4 8 8 O 1.21690 * 120.00216 * 180.02562 * 7 6 5 9 9 N 1.34779 * 119.99553 * 0.02689 * 7 6 5 10 10 C 1.46506 * 119.99677 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47014 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47033 * 180.02562 * 11 10 9 13 13 N 1.46503 * 109.46985 * 180.02562 * 12 11 10 14 14 C 1.34780 * 120.00129 * 180.02562 * 13 12 11 15 15 O 1.21588 * 119.99673 * 359.97438 * 14 13 12 16 16 N 1.34770 * 120.00441 * 179.97438 * 14 13 12 17 17 C 1.46494 * 120.00266 * 179.97438 * 16 14 13 18 18 C 1.53005 * 109.47424 * 180.02562 * 17 16 14 19 19 C 1.50699 * 109.47416 * 180.02562 * 18 17 16 20 20 H 1.08004 * 119.99796 * 0.02562 * 19 18 17 21 21 C 1.37874 * 119.99928 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00242 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00008 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47214 * 60.00070 * 23 21 19 25 25 H 1.48502 * 109.47500 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47075 * 300.00459 * 23 21 19 27 27 H 1.09002 * 109.47152 * 269.68325 * 1 2 3 28 28 H 1.09001 * 109.46980 * 149.68425 * 1 2 3 29 29 H 1.09004 * 109.47113 * 29.68406 * 1 2 3 30 30 H 1.08003 * 126.44292 * 0.02562 * 3 2 1 31 31 H 1.08007 * 125.61463 * 180.16644 * 4 3 2 32 32 H 0.97000 * 120.00199 * 359.97438 * 9 7 6 33 33 H 1.08996 * 109.47025 * 300.00112 * 10 9 7 34 34 H 1.08997 * 109.47170 * 60.00200 * 10 9 7 35 35 H 1.08998 * 109.47120 * 300.00410 * 11 10 9 36 36 H 1.08997 * 109.47050 * 60.00051 * 11 10 9 37 37 H 1.09007 * 109.47308 * 299.99399 * 12 11 10 38 38 H 1.08997 * 109.47377 * 59.99986 * 12 11 10 39 39 H 0.96994 * 120.00307 * 359.97438 * 13 12 11 40 40 H 0.97001 * 119.99631 * 0.02562 * 16 14 13 41 41 H 1.09002 * 109.47654 * 300.00487 * 17 16 14 42 42 H 1.09001 * 109.47037 * 60.00777 * 17 16 14 43 43 H 1.09002 * 109.47081 * 300.00811 * 18 17 16 44 44 H 1.09001 * 109.46401 * 60.00361 * 18 17 16 45 45 H 0.96996 * 120.00570 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6744 0.0036 5 8 3.6005 -0.6648 -0.0037 6 6 2.3220 -1.0955 -0.0060 7 6 1.8842 -2.4952 -0.0142 8 8 0.6968 -2.7614 -0.0161 9 7 2.7971 -3.4868 -0.0197 10 6 2.3598 -4.8850 -0.0273 11 6 3.5843 -5.8023 -0.0317 12 6 3.1276 -7.2625 -0.0403 13 7 4.3001 -8.1408 -0.0439 14 6 4.1397 -9.4790 -0.0521 15 8 3.0218 -9.9572 -0.0559 16 7 5.2182 -10.2871 -0.0559 17 6 5.0438 -11.7416 -0.0642 18 6 6.4154 -12.4198 -0.0665 19 6 6.2359 -13.9160 -0.0756 20 1 5.2429 -14.3408 -0.0798 21 6 7.3394 -14.7426 -0.0796 22 7 8.5485 -14.2254 -0.0750 23 14 7.1170 -16.5973 -0.0917 24 1 6.3644 -16.9977 -1.3076 25 1 8.4482 -17.2555 -0.0938 26 1 6.3616 -17.0131 1.1173 27 1 -0.3633 -0.0057 1.0277 28 1 -0.3633 -0.8872 -0.5187 29 1 -0.3633 0.8928 -0.5089 30 1 2.0306 2.1595 0.0004 31 1 4.5046 1.2916 0.0072 32 1 3.7436 -3.2746 -0.0186 33 1 1.7610 -5.0832 0.8616 34 1 1.7609 -5.0735 -0.9183 35 1 4.1835 -5.6041 -0.9204 36 1 4.1828 -5.6137 0.8595 37 1 2.5282 -7.4610 0.8482 38 1 2.5293 -7.4508 -0.9318 39 1 5.1919 -7.7594 -0.0412 40 1 6.1101 -9.9055 -0.0524 41 1 4.4897 -12.0462 0.8237 42 1 4.4911 -12.0361 -0.9563 43 1 6.9698 -12.1152 -0.9541 44 1 6.9677 -12.1251 0.8259 45 1 9.3249 -14.8069 -0.0782 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273555219.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:30 Heat of formation + Delta-G solvation = -99.028017 kcal Electronic energy + Delta-G solvation = -25106.111800 eV Core-core repulsion = 21123.590030 eV Total energy + Delta-G solvation = -3982.521771 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.67743 -40.99485 -40.56145 -37.50891 -36.54947 -35.68411 -34.96304 -34.78167 -32.72272 -31.49899 -30.90737 -28.76757 -27.12603 -25.99522 -23.81085 -22.98247 -22.76802 -22.21467 -21.89517 -20.95965 -19.48560 -18.98302 -18.39723 -17.55070 -17.51385 -17.05745 -16.98908 -16.68633 -16.47666 -16.41267 -15.53916 -15.48694 -15.16332 -15.01352 -14.87234 -14.40756 -14.24141 -14.07734 -13.90088 -13.75094 -13.53605 -13.22085 -13.12004 -12.91388 -12.81095 -12.61153 -12.52174 -12.24744 -12.07384 -11.67627 -11.50253 -11.32820 -11.19531 -10.68574 -10.58663 -10.34414 -10.31381 -9.69773 -9.57203 -8.22561 -6.32683 0.00977 1.40251 1.43142 1.45437 1.52991 1.59440 1.80662 2.05256 2.18291 2.23592 2.43079 3.12348 3.39037 3.69669 3.80008 3.91944 3.96078 3.97552 4.04056 4.49717 4.51608 4.52762 4.54886 4.57142 4.62355 4.72795 4.74502 4.79846 4.88499 5.04148 5.09401 5.10531 5.18967 5.26957 5.33080 5.45050 5.50743 5.53840 5.61475 5.80560 5.84631 6.07786 6.19069 6.39959 6.80174 6.98272 7.16281 7.36617 7.62145 8.89025 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.041655 B = 0.001377 C = 0.001335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.030679 B =20335.100223 C =20965.474297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.096 4.096 3 C -0.239 4.239 4 C 0.016 3.984 5 O -0.169 6.169 6 C -0.120 4.120 7 C 0.598 3.402 8 O -0.555 6.555 9 N -0.707 5.707 10 C 0.124 3.876 11 C -0.123 4.123 12 C 0.141 3.859 13 N -0.731 5.731 14 C 0.695 3.305 15 O -0.643 6.643 16 N -0.733 5.733 17 C 0.160 3.840 18 C 0.024 3.976 19 C -0.549 4.549 20 H 0.058 0.942 21 C 0.009 3.991 22 N -0.926 5.926 23 Si 0.964 3.036 24 H -0.269 1.269 25 H -0.280 1.280 26 H -0.269 1.269 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.179 0.821 31 H 0.255 0.745 32 H 0.418 0.582 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.414 0.586 40 H 0.408 0.592 41 H 0.042 0.958 42 H 0.042 0.958 43 H 0.010 0.990 44 H 0.010 0.990 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.948 36.200 0.187 36.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.100 4.100 3 C -0.258 4.258 4 C -0.053 4.053 5 O -0.065 6.065 6 C -0.171 4.171 7 C 0.386 3.614 8 O -0.435 6.435 9 N -0.359 5.359 10 C 0.000 4.000 11 C -0.161 4.161 12 C 0.016 3.984 13 N -0.388 5.388 14 C 0.395 3.605 15 O -0.525 6.525 16 N -0.388 5.388 17 C 0.035 3.965 18 C -0.014 4.014 19 C -0.587 4.587 20 H 0.076 0.924 21 C -0.190 4.190 22 N -0.565 5.565 23 Si 0.788 3.212 24 H -0.194 1.194 25 H -0.205 1.205 26 H -0.194 1.194 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.105 0.895 30 H 0.197 0.803 31 H 0.271 0.729 32 H 0.255 0.745 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.250 0.750 40 H 0.243 0.757 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.028 0.972 44 H 0.028 0.972 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.365 35.273 0.180 36.252 hybrid contribution 1.078 -0.575 0.009 1.222 sum -7.286 34.698 0.188 35.455 Atomic orbital electron populations 1.20433 0.88222 1.03563 1.03025 1.21028 0.98189 0.92007 0.98726 1.22108 0.92486 1.00739 1.10454 1.25323 1.01322 0.79694 0.99008 1.84041 1.27324 1.24116 1.71005 1.21645 0.82535 0.94389 1.18553 1.16717 0.85480 0.82715 0.76489 1.90848 1.17188 1.83073 1.52441 1.45745 1.10391 1.05802 1.73935 1.21237 0.97087 0.78832 1.02862 1.21793 0.97646 0.91114 1.05566 1.21034 0.87095 0.88294 1.01964 1.44861 1.11046 1.02904 1.80019 1.16201 0.84271 0.82265 0.77767 1.90871 1.25192 1.76161 1.60250 1.45193 1.08107 1.06699 1.78752 1.21067 0.98689 0.77187 0.99537 1.19128 0.91239 0.94565 0.96430 1.21449 0.93139 0.92462 1.51646 0.92364 1.25836 0.94788 1.03967 0.94387 1.70042 0.98359 1.37146 1.50961 0.85520 0.77440 0.79119 0.79095 1.19405 1.20541 1.19413 0.90605 0.91589 0.89456 0.80320 0.72917 0.74524 0.91306 0.91302 0.88507 0.88500 0.92387 0.92378 0.74974 0.75656 0.93936 0.93928 0.97198 0.97193 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.42 9.82 71.24 0.70 -0.73 16 2 C -0.10 -1.51 6.20 -19.74 -0.12 -1.63 16 3 C -0.24 -2.21 10.83 22.07 0.24 -1.97 16 4 C 0.02 0.10 12.08 67.10 0.81 0.91 16 5 O -0.17 -2.08 10.40 -4.97 -0.05 -2.13 16 6 C -0.12 -2.05 7.13 24.07 0.17 -1.88 16 7 C 0.60 11.85 7.79 86.44 0.67 12.52 16 8 O -0.55 -14.63 14.74 -4.32 -0.06 -14.69 16 9 N -0.71 -9.65 5.55 -467.10 -2.59 -12.24 16 10 C 0.12 1.69 5.67 86.38 0.49 2.18 16 11 C -0.12 -1.24 5.44 30.59 0.17 -1.07 16 12 C 0.14 2.64 5.67 86.38 0.49 3.13 16 13 N -0.73 -16.09 5.56 -478.53 -2.66 -18.75 16 14 C 0.70 23.68 8.57 179.06 1.53 25.21 16 15 O -0.64 -28.02 16.34 -3.99 -0.07 -28.08 16 16 N -0.73 -25.34 5.56 -478.54 -2.66 -28.00 16 17 C 0.16 6.96 5.61 86.38 0.48 7.45 16 18 C 0.02 1.20 5.09 29.85 0.15 1.36 16 19 C -0.55 -30.72 9.11 25.60 0.23 -30.48 16 20 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 21 C 0.01 0.51 5.46 84.65 0.46 0.97 16 22 N -0.93 -53.95 13.29 21.45 0.28 -53.66 16 23 Si 0.96 43.57 29.54 68.60 2.03 45.60 16 24 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 25 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 26 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 27 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.07 1.28 6.44 -2.39 -0.02 1.26 16 29 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.18 0.70 8.06 -2.91 -0.02 0.68 16 31 H 0.26 -0.90 8.06 -2.91 -0.02 -0.92 16 32 H 0.42 3.58 8.23 -92.71 -0.76 2.82 16 33 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 38 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.41 6.08 8.49 -92.71 -0.79 5.29 16 40 H 0.41 11.64 8.49 -92.71 -0.79 10.85 16 41 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 Total: -1.00 -79.51 388.27 -0.60 -80.11 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -1.30 Total: 15.88 kcal Atomic # 6 Polarization: 9.49 SS G_CDS: 6.48 Total: 15.98 kcal Atomic # 7 Polarization: -105.03 SS G_CDS: -7.63 Total: -112.66 kcal Atomic # 8 Polarization: -44.72 SS G_CDS: -0.18 Total: -44.91 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -79.51 -0.60 -80.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273555219.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.914 kcal (2) G-P(sol) polarization free energy of solvation -79.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds