Wall clock time and date at job start Tue Mar 31 2020 13:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35896 * 117.00425 * 2 1 4 4 C 1.38675 * 119.99366 * 0.02562 * 3 2 1 5 5 C 1.38684 * 119.99629 * 180.02562 * 4 3 2 6 6 O 1.35895 * 119.99810 * 179.97438 * 5 4 3 7 7 C 1.42902 * 117.00269 * 359.87997 * 6 5 4 8 8 C 1.38677 * 120.00013 * 359.85702 * 5 4 3 9 9 C 1.38676 * 119.99861 * 0.09538 * 8 5 4 10 10 O 1.35896 * 120.00136 * 179.97438 * 9 8 5 11 11 C 1.42891 * 117.00273 * 180.02562 * 10 9 8 12 12 C 1.52996 * 109.47397 * 179.97438 * 11 10 9 13 13 C 1.53004 * 109.47366 * 179.97438 * 12 11 10 14 14 N 1.46502 * 109.46866 * 179.97438 * 13 12 11 15 15 C 1.46506 * 119.99759 * 90.00125 * 14 13 12 16 16 C 1.34769 * 120.00228 * 269.99572 * 14 13 12 17 17 O 1.21691 * 120.00236 * 0.02562 * 16 14 13 18 18 C 1.46375 * 120.00280 * 180.02562 * 16 14 13 19 19 H 1.08002 * 119.99794 * 355.24482 * 18 16 14 20 20 C 1.40052 * 120.00322 * 175.24722 * 18 16 14 21 21 N 1.30669 * 119.99480 * 6.28433 * 20 18 16 22 22 Si 1.86799 * 119.99933 * 186.28002 * 20 18 16 23 23 H 1.48498 * 109.46822 * 94.98471 * 22 20 18 24 24 H 1.48502 * 109.46918 * 214.97975 * 22 20 18 25 25 H 1.48499 * 109.47372 * 334.98354 * 22 20 18 26 26 C 1.38668 * 120.00175 * 179.97438 * 3 2 1 27 27 H 1.08995 * 109.46731 * 59.99936 * 1 2 3 28 28 H 1.08997 * 109.47189 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46934 * 300.00070 * 1 2 3 30 30 H 1.07998 * 120.00707 * 359.97006 * 4 3 2 31 31 H 1.09001 * 109.46743 * 300.00593 * 7 6 5 32 32 H 1.08997 * 109.46894 * 60.00256 * 7 6 5 33 33 H 1.09000 * 109.47132 * 180.02562 * 7 6 5 34 34 H 1.07997 * 120.00077 * 180.37311 * 8 5 4 35 35 H 1.09004 * 109.47338 * 299.99842 * 11 10 9 36 36 H 1.09007 * 109.47660 * 59.99526 * 11 10 9 37 37 H 1.09001 * 109.47112 * 299.99812 * 12 11 10 38 38 H 1.08996 * 109.47428 * 59.99397 * 12 11 10 39 39 H 1.08996 * 109.47019 * 299.99549 * 13 12 11 40 40 H 1.08998 * 109.47142 * 60.00171 * 13 12 11 41 41 H 1.09004 * 109.46936 * 89.99868 * 15 14 13 42 42 H 1.08999 * 109.47123 * 209.99346 * 15 14 13 43 43 H 1.08997 * 109.47066 * 329.99616 * 15 14 13 44 44 H 0.97004 * 119.99505 * 180.02562 * 21 20 18 45 45 H 1.08000 * 120.00083 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2907 2.3738 0.0005 5 6 1.9204 3.6095 0.0000 6 8 1.1802 4.7492 0.0000 7 6 -0.2409 4.5999 -0.0021 8 6 3.3053 3.6820 0.0019 9 6 4.0605 2.5189 0.0024 10 8 5.4176 2.5900 0.0037 11 6 6.1320 1.3525 0.0036 12 6 7.6362 1.6319 0.0046 13 6 8.4012 0.3069 0.0050 14 7 9.8416 0.5746 0.0054 15 6 10.5614 0.7086 1.2744 16 6 10.5044 0.6974 -1.1616 17 8 9.9065 0.5864 -2.2156 18 6 11.9436 0.9643 -1.1612 19 1 12.4602 1.1391 -0.2290 20 6 12.6508 0.9932 -2.3698 21 7 12.0090 0.9045 -3.5045 22 14 14.5115 1.1585 -2.3594 23 1 15.1286 -0.1898 -2.4393 24 1 14.9428 1.9702 -3.5258 25 1 14.9421 1.8265 -1.1050 26 6 3.4308 1.2833 0.0005 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.2122 2.3174 0.0005 31 1 -0.5473 4.0516 -0.8930 32 1 -0.5498 4.0501 0.8870 33 1 -0.7097 5.5839 -0.0023 34 1 3.7956 4.6442 0.0076 35 1 5.8679 0.7802 0.8929 36 1 5.8695 0.7814 -0.8870 37 1 7.9001 2.2039 -0.8850 38 1 7.8991 2.2031 0.8949 39 1 8.1373 -0.2647 0.8948 40 1 8.1385 -0.2647 -0.8851 41 1 10.9276 -0.2685 1.5893 42 1 11.4039 1.3878 1.1441 43 1 9.8881 1.1064 2.0337 44 1 12.4989 0.9241 -4.3415 45 1 4.0190 0.3775 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274884009.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:56 Heat of formation + Delta-G solvation = -120.434732 kcal Electronic energy + Delta-G solvation = -26461.854330 eV Core-core repulsion = 22446.111543 eV Total energy + Delta-G solvation = -4015.742787 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.90031 -39.23401 -39.08544 -37.76377 -35.89564 -34.31967 -32.43840 -32.01465 -30.58340 -29.61298 -28.20618 -27.18262 -26.74436 -25.83422 -24.39266 -22.75276 -21.96930 -21.14539 -19.45687 -18.94980 -17.33227 -16.69119 -16.53089 -16.33954 -16.28172 -16.16045 -15.90136 -15.79361 -15.52311 -15.00033 -14.72673 -14.21843 -14.08239 -13.76815 -13.40022 -13.02141 -12.70711 -12.63514 -12.47398 -12.16227 -11.92027 -11.77798 -11.63930 -11.53512 -11.45479 -11.37982 -11.29060 -11.12752 -10.92812 -10.81772 -10.40770 -10.22258 -10.12001 -10.03699 -8.84406 -8.36689 -8.25842 -7.59457 -7.24649 -6.19895 -4.63784 1.23199 1.27056 2.65497 2.95650 3.14249 3.21549 3.24837 3.46490 3.55358 4.10089 4.53565 4.57683 4.61656 4.68182 4.72025 4.76961 4.78975 4.90901 4.99140 5.02481 5.09195 5.12238 5.15084 5.21371 5.43090 5.56947 5.64353 5.73360 5.82601 5.97895 6.02727 6.03970 6.07977 6.13564 6.31151 6.43067 6.54785 6.56027 6.77053 6.86923 7.17769 7.41018 7.45767 7.62009 8.14038 8.34961 9.02817 9.41519 10.57471 10.76212 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.022605 B = 0.002061 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.384594 B =13580.695290 C =13969.231323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.312 6.312 3 C 0.201 3.799 4 C -0.337 4.337 5 C 0.199 3.801 6 O -0.311 6.311 7 C 0.028 3.972 8 C -0.224 4.224 9 C 0.214 3.786 10 O -0.303 6.303 11 C 0.063 3.937 12 C -0.132 4.132 13 C 0.133 3.867 14 N -0.648 5.648 15 C 0.102 3.898 16 C 0.555 3.445 17 O -0.576 6.576 18 C -0.544 4.544 19 H 0.073 0.927 20 C 0.087 3.913 21 N -0.766 5.766 22 Si 0.907 3.093 23 H -0.273 1.273 24 H -0.279 1.279 25 H -0.264 1.264 26 C -0.277 4.277 27 H 0.055 0.945 28 H 0.101 0.899 29 H 0.055 0.945 30 H 0.133 0.867 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.101 0.899 34 H 0.141 0.859 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.054 0.946 40 H 0.075 0.925 41 H 0.032 0.968 42 H 0.072 0.928 43 H 0.041 0.959 44 H 0.268 0.732 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.532 2.177 9.885 25.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.155 3.845 4 C -0.356 4.356 5 C 0.153 3.847 6 O -0.224 6.224 7 C -0.067 4.067 8 C -0.243 4.243 9 C 0.166 3.834 10 O -0.215 6.215 11 C -0.013 4.013 12 C -0.172 4.172 13 C 0.008 3.992 14 N -0.386 5.386 15 C -0.042 4.042 16 C 0.361 3.639 17 O -0.459 6.459 18 C -0.581 4.581 19 H 0.091 0.909 20 C -0.133 4.133 21 N -0.395 5.395 22 Si 0.731 3.269 23 H -0.198 1.198 24 H -0.205 1.205 25 H -0.188 1.188 26 C -0.296 4.296 27 H 0.074 0.926 28 H 0.119 0.881 29 H 0.073 0.927 30 H 0.151 0.849 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.120 0.880 34 H 0.158 0.842 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.093 0.907 41 H 0.050 0.950 42 H 0.090 0.910 43 H 0.059 0.941 44 H 0.079 0.921 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -23.562 2.275 9.095 25.358 hybrid contribution 0.324 -0.171 0.114 0.384 sum -23.238 2.104 9.208 25.084 Atomic orbital electron populations 1.23072 0.78321 1.04038 1.01327 1.86099 1.21466 1.26817 1.88090 1.18312 0.91286 0.83533 0.91346 1.21065 1.00293 0.91798 1.22488 1.18191 0.90213 0.84408 0.91857 1.86086 1.19124 1.28975 1.88184 1.23074 0.78373 1.03923 1.01354 1.19339 0.89965 0.98273 1.16740 1.18206 0.83048 0.91969 0.90141 1.86135 1.14157 1.34161 1.87049 1.22960 0.92666 0.84065 1.01572 1.22032 0.90143 1.00996 1.03983 1.20797 0.83045 0.94040 1.01317 1.47978 1.05781 1.77887 1.06989 1.21401 0.96888 1.00102 0.85843 1.18277 0.87986 0.76754 0.80836 1.90598 1.69506 1.55573 1.30213 1.21017 0.91845 1.51541 0.93666 0.90893 1.25746 0.99824 0.92690 0.95048 1.70030 1.36394 1.35145 0.97908 0.86373 0.83209 0.78710 0.78569 1.19807 1.20458 1.18846 1.20377 0.92455 0.98059 1.18727 0.92601 0.88062 0.92656 0.84901 0.92604 0.92642 0.88045 0.84153 0.91883 0.91385 0.90081 0.91455 0.92710 0.90656 0.94979 0.90986 0.94055 0.92105 0.84186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.44 10.49 -19.41 -0.20 -3.64 16 3 C 0.20 2.46 6.68 -39.26 -0.26 2.19 16 4 C -0.34 -3.64 8.02 -39.26 -0.31 -3.95 16 5 C 0.20 2.41 6.68 -39.25 -0.26 2.15 16 6 O -0.31 -3.34 10.49 -19.41 -0.20 -3.54 16 7 C 0.03 0.17 9.81 101.05 0.99 1.16 16 8 C -0.22 -3.04 9.92 -39.26 -0.39 -3.43 16 9 C 0.21 3.08 6.68 -39.26 -0.26 2.81 16 10 O -0.30 -4.75 10.13 -19.41 -0.20 -4.95 16 11 C 0.06 0.92 4.74 37.16 0.18 1.09 16 12 C -0.13 -2.30 5.91 -26.73 -0.16 -2.46 16 13 C 0.13 2.52 5.41 -4.04 -0.02 2.50 16 14 N -0.65 -14.69 2.87 -183.24 -0.53 -15.22 16 15 C 0.10 1.87 10.18 59.85 0.61 2.48 16 16 C 0.56 15.80 7.61 -12.99 -0.10 15.71 16 17 O -0.58 -18.56 14.62 5.20 0.08 -18.48 16 18 C -0.54 -15.29 8.76 -35.63 -0.31 -15.61 16 19 H 0.07 1.87 5.96 -52.49 -0.31 1.56 16 20 C 0.09 2.42 5.49 -17.37 -0.10 2.33 16 21 N -0.77 -23.01 11.85 55.55 0.66 -22.35 16 22 Si 0.91 20.13 29.56 -169.99 -5.03 15.10 16 23 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 24 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 25 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 26 C -0.28 -3.70 8.97 -39.26 -0.35 -4.06 16 27 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 28 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 30 H 0.13 1.05 4.52 -52.49 -0.24 0.81 16 31 H 0.06 0.29 7.66 -51.93 -0.40 -0.10 16 32 H 0.05 0.28 7.65 -51.93 -0.40 -0.12 16 33 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.14 1.84 8.06 -52.49 -0.42 1.41 16 35 H 0.06 0.78 7.66 -51.93 -0.40 0.38 16 36 H 0.07 0.98 7.66 -51.93 -0.40 0.59 16 37 H 0.08 1.70 8.14 -51.93 -0.42 1.27 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.05 0.85 8.07 -51.93 -0.42 0.43 16 40 H 0.08 1.57 7.42 -51.93 -0.39 1.19 16 41 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 1.37 6.04 -51.93 -0.31 1.06 16 43 H 0.04 0.62 8.07 -51.93 -0.42 0.21 16 44 H 0.27 7.30 8.29 -40.82 -0.34 6.97 16 45 H 0.14 1.77 6.29 -52.49 -0.33 1.44 16 LS Contribution 375.40 15.07 5.66 5.66 Total: -1.00 -36.08 375.40 -6.00 -42.08 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -6.47 Total: 1.27 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: 0.24 Total: 4.08 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: 0.13 Total: -37.57 kcal Atomic # 8 Polarization: -30.08 SS G_CDS: -0.53 Total: -30.61 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.03 Total: 15.10 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.08 -6.00 -42.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274884009.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.357 kcal (2) G-P(sol) polarization free energy of solvation -36.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds