Wall clock time and date at job start Tue Mar 31 2020 14:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 114.00006 * 2 1 4 4 C 1.52995 * 109.47220 * 179.97438 * 3 2 1 5 5 O 1.42903 * 109.47195 * 64.99592 * 4 3 2 6 6 C 1.35654 * 116.99950 * 179.97438 * 5 4 3 7 7 C 1.38441 * 120.12327 * 0.02562 * 6 5 4 8 8 C 1.38684 * 120.03492 * 179.97438 * 7 6 5 9 9 O 1.35706 * 119.86338 * 180.02562 * 8 7 6 10 10 C 1.42904 * 117.00017 * 180.02562 * 9 8 7 11 11 C 1.39193 * 120.27197 * 0.02562 * 8 7 6 12 12 C 1.37540 * 120.24047 * 359.97438 * 11 8 7 13 13 C 1.39864 * 119.96760 * 0.02562 * 12 11 8 14 14 C 1.47298 * 120.13765 * 180.26828 * 13 12 11 15 15 O 1.21615 * 119.99789 * 179.72357 * 14 13 12 16 16 N 1.34770 * 119.99967 * 359.72689 * 14 13 12 17 17 C 1.46497 * 120.00093 * 179.97438 * 16 14 13 18 18 C 1.53004 * 109.47246 * 179.97438 * 17 16 14 19 19 C 1.50705 * 109.47101 * 180.02562 * 18 17 16 20 20 H 1.07994 * 119.99637 * 0.02562 * 19 18 17 21 21 C 1.37871 * 119.99752 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00147 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99881 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47105 * 59.99866 * 23 21 19 25 25 H 1.48497 * 109.47082 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47087 * 300.00284 * 23 21 19 27 27 H 1.09000 * 109.47318 * 300.00362 * 1 2 3 28 28 H 1.09000 * 109.46926 * 60.00323 * 1 2 3 29 29 H 1.08998 * 109.47254 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47214 * 59.99455 * 3 2 1 31 31 H 1.09000 * 109.46969 * 299.99952 * 3 2 1 32 32 H 1.08999 * 109.47453 * 304.99963 * 4 3 2 33 33 H 1.08997 * 109.47415 * 184.99919 * 4 3 2 34 34 H 1.07998 * 119.98357 * 359.96289 * 7 6 5 35 35 H 1.09002 * 109.47085 * 300.00020 * 10 9 8 36 36 H 1.08999 * 109.47274 * 59.99490 * 10 9 8 37 37 H 1.08995 * 109.47413 * 179.97438 * 10 9 8 38 38 H 1.07993 * 119.87717 * 180.02562 * 11 8 7 39 39 H 1.07995 * 120.01626 * 180.02562 * 12 11 8 40 40 H 0.97005 * 119.99864 * 359.97438 * 16 14 13 41 41 H 1.08998 * 109.47273 * 300.00362 * 17 16 14 42 42 H 1.09002 * 109.47213 * 60.00345 * 17 16 14 43 43 H 1.08998 * 109.47396 * 300.00428 * 18 17 16 44 44 H 1.08996 * 109.46618 * 60.00599 * 18 17 16 45 45 H 0.97008 * 119.99768 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9659 0.5792 -1.2201 6 6 5.3007 0.3986 -1.3808 7 6 6.1799 0.7938 -0.3871 8 6 7.5441 0.6079 -0.5531 9 8 8.4028 0.9961 0.4234 10 6 9.7951 0.7762 0.1882 11 6 8.0363 0.0246 -1.7172 12 6 7.1730 -0.3723 -2.7116 13 6 5.7952 -0.1895 -2.5547 14 6 4.8668 -0.6185 -3.6148 15 8 3.6690 -0.4630 -3.4736 16 7 5.3449 -1.1835 -4.7411 17 6 4.4215 -1.6107 -5.7952 18 6 5.2158 -2.2143 -6.9553 19 6 4.2660 -2.6532 -8.0398 20 1 3.2023 -2.5150 -7.9144 21 6 4.7550 -3.2311 -9.1921 22 7 6.0504 -3.3997 -9.3445 23 14 3.5777 -3.7745 -10.5368 24 1 2.8064 -2.6023 -11.0228 25 1 4.3486 -4.3615 -11.6621 26 1 2.6422 -4.7921 -9.9942 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.6886 1.8465 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8508 0.5686 0.8427 33 1 3.9785 2.1765 0.0902 34 1 5.8032 1.2474 0.5177 35 1 9.9757 -0.2893 0.0460 36 1 10.1028 1.3192 -0.7054 37 1 10.3687 1.1313 1.0442 38 1 9.0998 -0.1176 -1.8396 39 1 7.5587 -0.8248 -3.6131 40 1 6.3003 -1.3073 -4.8538 41 1 3.7355 -2.3580 -5.3964 42 1 3.8546 -0.7509 -6.1521 43 1 5.9016 -1.4667 -7.3539 44 1 5.7829 -3.0741 -6.5987 45 1 6.3944 -3.8067 -10.1552 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276609313.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:45 Heat of formation + Delta-G solvation = -158.472013 kcal Electronic energy + Delta-G solvation = -26855.898282 eV Core-core repulsion = 22838.506075 eV Total energy + Delta-G solvation = -4017.392207 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.81719 -40.37708 -40.01669 -38.64909 -37.35710 -36.52290 -34.79645 -32.44400 -32.04033 -31.22956 -30.19411 -28.25680 -27.29089 -26.72963 -24.88140 -24.14338 -22.91614 -22.53860 -21.46438 -19.94979 -18.71118 -18.31786 -17.99432 -17.80938 -17.51279 -16.82367 -16.49611 -16.44998 -16.40176 -16.37438 -16.11836 -16.02334 -15.80862 -15.05702 -14.76811 -14.54622 -14.27841 -13.96656 -13.64637 -13.45842 -13.31430 -13.20488 -13.09116 -12.91604 -12.53758 -12.52804 -12.42867 -12.22459 -12.06164 -11.95200 -11.64950 -11.59980 -11.46364 -10.78325 -10.66312 -10.59106 -10.00677 -9.70740 -9.15502 -8.23248 -6.33650 -0.12836 0.30491 1.41749 1.44481 1.52418 1.90064 2.03430 2.24095 2.33835 2.48057 2.78199 2.81836 3.11151 3.62679 3.82782 3.88762 3.98692 4.05311 4.08791 4.26499 4.34360 4.36676 4.45081 4.45434 4.47560 4.50298 4.50489 4.52207 4.54847 4.71465 4.80993 4.83364 4.85369 4.92251 5.12927 5.20195 5.31601 5.42321 5.52028 5.59180 5.79709 6.16943 6.17505 6.25086 6.39460 6.70210 6.78829 7.35198 7.36609 8.88528 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.009666 B = 0.003043 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2896.065386 B = 9200.004076 C =11975.682908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.418 6.418 3 C 0.060 3.940 4 C 0.043 3.957 5 O -0.298 6.298 6 C 0.211 3.789 7 C -0.261 4.261 8 C 0.195 3.805 9 O -0.321 6.321 10 C 0.013 3.987 11 C -0.246 4.246 12 C -0.003 4.003 13 C -0.235 4.235 14 C 0.551 3.449 15 O -0.573 6.573 16 N -0.718 5.718 17 C 0.144 3.856 18 C 0.025 3.975 19 C -0.549 4.549 20 H 0.057 0.943 21 C 0.008 3.992 22 N -0.925 5.925 23 Si 0.965 3.035 24 H -0.269 1.269 25 H -0.278 1.278 26 H -0.269 1.269 27 H 0.066 0.934 28 H 0.039 0.961 29 H 0.087 0.913 30 H 0.108 0.892 31 H 0.051 0.949 32 H 0.082 0.918 33 H 0.107 0.893 34 H 0.160 0.840 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.123 0.877 38 H 0.168 0.832 39 H 0.153 0.847 40 H 0.407 0.593 41 H 0.042 0.958 42 H 0.043 0.957 43 H 0.010 0.990 44 H 0.010 0.990 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.742 12.030 24.884 28.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.338 6.338 3 C -0.016 4.016 4 C -0.031 4.031 5 O -0.210 6.210 6 C 0.162 3.838 7 C -0.281 4.281 8 C 0.148 3.852 9 O -0.234 6.234 10 C -0.081 4.081 11 C -0.265 4.265 12 C -0.022 4.022 13 C -0.239 4.239 14 C 0.340 3.660 15 O -0.453 6.453 16 N -0.370 5.370 17 C 0.020 3.980 18 C -0.012 4.012 19 C -0.587 4.587 20 H 0.075 0.925 21 C -0.190 4.190 22 N -0.565 5.565 23 Si 0.789 3.211 24 H -0.194 1.194 25 H -0.204 1.204 26 H -0.194 1.194 27 H 0.084 0.916 28 H 0.058 0.942 29 H 0.105 0.895 30 H 0.126 0.874 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.125 0.875 34 H 0.178 0.822 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.142 0.858 38 H 0.185 0.815 39 H 0.171 0.829 40 H 0.243 0.757 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.029 0.971 44 H 0.028 0.972 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.918 11.950 24.917 27.911 hybrid contribution -0.158 -0.324 -1.073 1.131 sum 3.761 11.626 23.844 26.793 Atomic orbital electron populations 1.22883 0.79537 1.03525 1.00893 1.87941 1.21533 1.28689 1.95610 1.22739 0.91078 0.85256 1.02499 1.23326 0.94732 0.99562 0.85524 1.86462 1.19026 1.75370 1.40093 1.18813 0.83167 0.90000 0.91794 1.20421 0.91067 1.14319 1.02251 1.18975 0.89435 0.89590 0.87220 1.86024 1.19302 1.77454 1.40579 1.23500 0.76674 1.02916 1.05038 1.21353 1.02116 1.08582 0.94418 1.21182 0.89688 0.92496 0.98828 1.19300 0.94470 1.14262 0.95854 1.18448 0.88042 0.77348 0.82157 1.90772 1.17338 1.57046 1.80176 1.46003 1.11247 1.62022 1.17732 1.21190 0.92196 0.97400 0.87171 1.19120 0.95269 0.95177 0.91677 1.21436 0.93847 1.40747 1.02715 0.92482 1.25858 0.96950 0.95503 1.00732 1.70049 1.13528 1.44536 1.28375 0.85503 0.78678 0.78809 0.78085 1.19368 1.20356 1.19434 0.91554 0.94213 0.89457 0.87393 0.93046 0.90031 0.87471 0.82242 0.91171 0.91073 0.85849 0.81462 0.82914 0.75655 0.93955 0.93812 0.97129 0.97205 0.92479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 113.37 1.25 1.79 16 2 O -0.42 -11.43 10.67 -144.34 -1.54 -12.97 16 3 C 0.06 1.24 6.32 71.98 0.45 1.69 16 4 C 0.04 0.91 5.12 71.98 0.37 1.28 16 5 O -0.30 -9.77 8.16 -64.96 -0.53 -10.30 16 6 C 0.21 6.36 6.70 22.82 0.15 6.51 16 7 C -0.26 -5.96 8.96 22.42 0.20 -5.76 16 8 C 0.20 3.94 6.69 22.61 0.15 4.09 16 9 O -0.32 -5.28 10.48 -90.27 -0.95 -6.23 16 10 C 0.01 0.10 9.80 113.37 1.11 1.21 16 11 C -0.25 -4.64 9.01 22.33 0.20 -4.44 16 12 C 0.00 -0.08 9.52 22.50 0.21 0.14 16 13 C -0.23 -7.57 5.89 -20.00 -0.12 -7.69 16 14 C 0.55 22.42 7.76 86.63 0.67 23.10 16 15 O -0.57 -27.98 15.15 16.89 0.26 -27.73 16 16 N -0.72 -28.29 5.50 -466.51 -2.57 -30.86 16 17 C 0.14 6.75 5.61 86.38 0.48 7.24 16 18 C 0.03 1.31 5.09 29.85 0.15 1.47 16 19 C -0.55 -31.69 9.11 25.60 0.23 -31.46 16 20 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 21 C 0.01 0.48 5.46 84.65 0.46 0.94 16 22 N -0.93 -54.95 13.29 21.44 0.28 -54.67 16 23 Si 0.96 44.48 29.54 68.60 2.03 46.50 16 24 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 25 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 26 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 27 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.09 1.63 8.14 -2.39 -0.02 1.62 16 30 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 31 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.08 1.52 7.66 -2.39 -0.02 1.51 16 33 H 0.11 1.56 7.66 -2.39 -0.02 1.54 16 34 H 0.16 2.83 6.29 -2.91 -0.02 2.81 16 35 H 0.07 0.46 7.65 -2.39 -0.02 0.45 16 36 H 0.07 0.45 7.65 -2.39 -0.02 0.44 16 37 H 0.12 0.46 8.14 -2.39 -0.02 0.45 16 38 H 0.17 1.99 6.27 -2.91 -0.02 1.98 16 39 H 0.15 3.09 6.39 -2.91 -0.02 3.07 16 40 H 0.41 13.50 6.49 -92.70 -0.60 12.89 16 41 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.01 0.56 8.14 -2.39 -0.02 0.55 16 44 H 0.01 0.52 8.14 -2.39 -0.02 0.51 16 45 H 0.27 14.84 8.31 -92.70 -0.77 14.07 16 Total: -1.00 -80.56 379.68 3.38 -77.19 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: 0.40 Total: 18.96 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: 5.99 Total: 0.11 kcal Atomic # 7 Polarization: -83.24 SS G_CDS: -2.28 Total: -85.52 kcal Atomic # 8 Polarization: -54.47 SS G_CDS: -2.76 Total: -57.23 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -80.56 3.38 -77.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276609313.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.285 kcal (2) G-P(sol) polarization free energy of solvation -80.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds