Wall clock time and date at job start Tue Mar 31 2020 13:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47334 * 2 1 4 4 C 1.46501 * 120.00094 * 270.00147 * 3 2 1 5 5 C 1.50699 * 109.46929 * 269.99939 * 4 3 2 6 6 H 1.07997 * 120.00216 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99785 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99948 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99968 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.46946 * 90.00050 * 9 7 5 11 11 H 1.48499 * 109.46895 * 209.99515 * 9 7 5 12 12 H 1.48498 * 109.47258 * 329.99595 * 9 7 5 13 13 C 1.34774 * 119.99896 * 89.99735 * 3 2 1 14 14 O 1.21279 * 120.00258 * 179.97438 * 13 3 2 15 15 C 1.50700 * 120.00286 * 0.02562 * 13 3 2 16 16 C 1.50696 * 109.47355 * 179.97438 * 15 13 3 17 17 C 1.38225 * 119.91049 * 89.99804 * 16 15 13 18 18 C 1.38666 * 120.08888 * 179.97438 * 17 16 15 19 19 O 1.35996 * 120.04827 * 180.02562 * 18 17 16 20 20 C 1.42903 * 116.99756 * 359.97438 * 19 18 17 21 21 C 1.38986 * 119.91022 * 0.27480 * 18 17 16 22 22 O 1.36093 * 120.08926 * 179.70702 * 21 18 17 23 23 C 1.38975 * 119.81948 * 359.45161 * 21 18 17 24 24 O 1.35993 * 120.04574 * 180.25064 * 23 21 18 25 25 C 1.42901 * 117.00044 * 180.29753 * 24 23 21 26 26 C 1.38228 * 119.90763 * 269.97525 * 16 15 13 27 27 H 1.09004 * 109.47144 * 300.00230 * 1 2 3 28 28 H 1.09000 * 109.46941 * 59.99348 * 1 2 3 29 29 H 1.08998 * 109.47594 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46923 * 240.00103 * 2 1 3 31 31 H 1.08997 * 109.47085 * 119.99898 * 2 1 3 32 32 H 1.09000 * 109.46818 * 30.00157 * 4 3 2 33 33 H 1.08998 * 109.47187 * 150.00271 * 4 3 2 34 34 H 0.96999 * 119.99938 * 180.02562 * 8 7 5 35 35 H 1.09002 * 109.47180 * 59.99476 * 15 13 3 36 36 H 1.09000 * 109.46658 * 299.99797 * 15 13 3 37 37 H 1.07998 * 119.95778 * 0.02562 * 17 16 15 38 38 H 1.09002 * 109.47382 * 300.00415 * 20 19 18 39 39 H 1.09001 * 109.46938 * 180.02562 * 20 19 18 40 40 H 1.09004 * 109.46926 * 60.00522 * 20 19 18 41 41 H 0.96691 * 114.00564 * 90.00022 * 22 21 18 42 42 H 1.09000 * 109.46991 * 180.02562 * 25 24 23 43 43 H 1.09000 * 109.47144 * 300.00068 * 25 24 23 44 44 H 1.08994 * 109.47150 * 60.00463 * 25 24 23 45 45 H 1.08000 * 119.96263 * 0.04125 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3427 1.2301 -1.0962 7 6 4.1491 2.3896 -2.8779 8 7 5.3914 2.1833 -3.2574 9 14 3.0128 3.4351 -3.9291 10 1 3.1164 4.8554 -3.5080 11 1 3.4058 3.3120 -5.3559 12 1 1.6131 2.9692 -3.7592 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9923 1.3060 2.4723 16 6 2.3192 2.2291 3.6177 17 6 1.3391 3.0507 4.1421 18 6 1.6357 3.9012 5.1964 19 8 0.6707 4.7088 5.7120 20 6 -0.6268 4.6298 5.1184 21 6 2.9219 3.9308 5.7222 22 8 3.2185 4.7684 6.7530 23 6 3.9030 3.0990 5.1959 24 8 5.1617 3.1206 5.7102 25 6 6.1206 2.2435 5.1157 26 6 3.5982 2.2514 4.1414 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5817 1.6877 -2.0283 33 1 2.0957 3.1410 -1.1384 34 1 5.7175 2.5738 -4.0833 35 1 2.6228 0.4186 2.5299 36 1 0.9444 1.0115 2.5302 37 1 0.3408 3.0297 3.7306 38 1 -0.5598 4.8909 4.0622 39 1 -1.2997 5.3240 5.6219 40 1 -1.0107 3.6144 5.2180 41 1 3.0831 4.3791 7.6276 42 1 7.0805 2.3599 5.6189 43 1 5.7810 1.2126 5.2156 44 1 6.2316 2.4888 4.0595 45 1 4.3614 1.6082 3.7288 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279090252.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:47 Heat of formation + Delta-G solvation = -120.866095 kcal Electronic energy + Delta-G solvation = -28006.829466 eV Core-core repulsion = 23991.067974 eV Total energy + Delta-G solvation = -4015.761492 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.78601 -39.24097 -39.00485 -37.10500 -36.50125 -35.33468 -32.81403 -31.64400 -30.35344 -29.64289 -28.58019 -27.88470 -27.31719 -25.86818 -23.03342 -22.74994 -21.99092 -21.44676 -18.89608 -18.35733 -17.54255 -17.14872 -16.91960 -16.56704 -16.51016 -16.09661 -15.55109 -15.53765 -15.13789 -14.73382 -14.64874 -14.05918 -13.78366 -13.66796 -13.52570 -13.32166 -12.71693 -12.66950 -12.39229 -12.32264 -12.18004 -11.93436 -11.75024 -11.59949 -11.56604 -11.40917 -11.10338 -10.98954 -10.75983 -10.61248 -10.54487 -10.50974 -10.17564 -9.56486 -9.07030 -8.60521 -8.14234 -8.12780 -7.75714 -6.10710 -4.09363 1.21629 1.40082 2.78857 3.27537 3.29835 3.33384 3.35763 3.50660 3.60357 3.89460 4.20138 4.38004 4.62161 4.86899 4.98734 5.03662 5.05059 5.07434 5.11849 5.18195 5.19597 5.23166 5.26153 5.37753 5.43096 5.49611 5.53581 5.56420 5.67098 5.72858 5.90632 6.01654 6.10205 6.15377 6.34088 6.37802 6.54496 6.68630 6.92766 7.14901 7.22690 7.31714 7.59337 7.82781 8.21331 8.44794 8.90208 8.96003 9.49833 11.02710 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.012492 B = 0.003665 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.949936 B = 7637.370282 C = 8378.053547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.105 3.895 3 N -0.593 5.593 4 C 0.217 3.783 5 C -0.528 4.528 6 H 0.074 0.926 7 C 0.073 3.927 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.509 3.491 14 O -0.529 6.529 15 C -0.107 4.107 16 C 0.017 3.983 17 C -0.216 4.216 18 C 0.141 3.859 19 O -0.306 6.306 20 C 0.026 3.974 21 C 0.033 3.967 22 O -0.473 6.473 23 C 0.143 3.857 24 O -0.306 6.306 25 C 0.024 3.976 26 C -0.212 4.212 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.029 0.971 33 H 0.035 0.965 34 H 0.265 0.735 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.131 0.869 38 H 0.059 0.941 39 H 0.099 0.901 40 H 0.055 0.945 41 H 0.376 0.624 42 H 0.101 0.899 43 H 0.056 0.944 44 H 0.062 0.938 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.513 -4.873 18.199 21.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.325 5.325 4 C 0.096 3.904 5 C -0.567 4.567 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.295 3.705 14 O -0.405 6.405 15 C -0.147 4.147 16 C 0.016 3.984 17 C -0.235 4.235 18 C 0.094 3.906 19 O -0.219 6.219 20 C -0.070 4.070 21 C -0.013 4.013 22 O -0.280 6.280 23 C 0.097 3.903 24 O -0.219 6.219 25 C -0.071 4.071 26 C -0.231 4.231 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.047 0.953 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.120 0.880 36 H 0.117 0.883 37 H 0.149 0.851 38 H 0.077 0.923 39 H 0.118 0.882 40 H 0.074 0.926 41 H 0.229 0.771 42 H 0.119 0.881 43 H 0.075 0.925 44 H 0.081 0.919 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.926 -3.554 17.882 20.759 hybrid contribution -0.630 -0.187 -0.825 1.055 sum -10.556 -3.741 17.057 20.405 Atomic orbital electron populations 1.22239 0.96801 1.01606 1.02200 1.21457 0.93383 0.83885 1.03174 1.47940 1.64309 1.13375 1.06925 1.19641 0.97305 0.93369 0.80057 1.21316 0.95349 1.32921 1.07091 0.90811 1.24851 0.94987 0.95766 0.97361 1.69894 1.15113 1.45006 1.23589 0.86859 0.81440 0.81672 0.79773 1.19906 1.21052 1.19098 1.20093 0.78727 0.87007 0.84639 1.90719 1.44828 1.17966 1.87011 1.20821 1.03925 0.98432 0.91486 1.18899 0.92240 0.94197 0.93071 1.20830 1.01127 1.01442 1.00110 1.18860 0.87546 0.90687 0.93472 1.86103 1.19188 1.58968 1.57661 1.23105 0.82003 1.02442 0.99408 1.16631 0.88788 0.98827 0.97078 1.84988 1.88898 1.38743 1.15382 1.18890 0.84679 0.93438 0.93315 1.86095 1.17006 1.61138 1.57671 1.23144 0.91180 0.93085 0.99698 1.20920 0.97949 1.04539 0.99742 0.93028 0.92215 0.91931 0.89680 0.91349 0.95285 0.94657 0.92558 0.88045 0.88273 0.85080 0.92271 0.88214 0.92612 0.77079 0.88112 0.92548 0.91915 0.84791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.97 10.24 37.16 0.38 -1.59 16 2 C 0.11 1.52 5.93 -4.04 -0.02 1.50 16 3 N -0.59 -11.70 2.46 -175.06 -0.43 -12.13 16 4 C 0.22 5.22 4.23 -5.19 -0.02 5.20 16 5 C -0.53 -15.03 9.94 -34.44 -0.34 -15.37 16 6 H 0.07 2.29 8.06 -52.49 -0.42 1.87 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 8 N -0.90 -27.59 13.96 55.43 0.77 -26.82 16 9 Si 0.88 21.58 27.47 -169.99 -4.67 16.91 16 10 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.14 6.54 56.52 0.37 -5.78 16 13 C 0.51 10.04 7.67 -10.99 -0.08 9.95 16 14 O -0.53 -13.04 15.61 5.56 0.09 -12.95 16 15 C -0.11 -1.48 4.38 -29.04 -0.13 -1.61 16 16 C 0.02 0.25 4.37 -104.63 -0.46 -0.21 16 17 C -0.22 -3.08 8.69 -39.43 -0.34 -3.42 16 18 C 0.14 2.09 6.70 -39.15 -0.26 1.82 16 19 O -0.31 -4.12 10.28 -34.31 -0.35 -4.47 16 20 C 0.03 0.24 9.81 101.05 0.99 1.23 16 21 C 0.03 0.51 6.73 -39.03 -0.26 0.25 16 22 O -0.47 -6.85 13.07 -45.29 -0.59 -7.45 16 23 C 0.14 2.21 6.70 -39.15 -0.26 1.94 16 24 O -0.31 -4.40 10.28 -34.30 -0.35 -4.75 16 25 C 0.02 0.26 9.81 101.05 0.99 1.25 16 26 C -0.21 -3.21 8.69 -39.42 -0.34 -3.55 16 27 H 0.05 0.55 7.22 -51.93 -0.38 0.17 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 1.31 8.07 -51.93 -0.42 0.89 16 31 H 0.07 0.80 6.44 -51.93 -0.33 0.47 16 32 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 33 H 0.04 0.92 6.85 -51.93 -0.36 0.57 16 34 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 35 H 0.10 1.20 7.34 -51.93 -0.38 0.82 16 36 H 0.10 1.08 7.13 -51.93 -0.37 0.71 16 37 H 0.13 1.59 6.29 -52.49 -0.33 1.26 16 38 H 0.06 0.57 7.66 -51.93 -0.40 0.17 16 39 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 41 H 0.38 3.55 9.06 45.56 0.41 3.96 16 42 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.06 0.51 7.66 -51.93 -0.40 0.11 16 44 H 0.06 0.74 7.66 -51.93 -0.40 0.34 16 45 H 0.13 1.85 6.29 -52.49 -0.33 1.52 16 LS Contribution 374.63 15.07 5.65 5.65 Total: -1.00 -37.81 374.63 -5.88 -43.68 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -5.73 Total: 2.92 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -0.26 Total: -0.59 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.34 Total: -38.95 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -1.21 Total: -29.62 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -37.81 -5.88 -43.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279090252.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.181 kcal (2) G-P(sol) polarization free energy of solvation -37.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds