Wall clock time and date at job start Tue Mar 31 2020 13:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47334 * 2 1 4 4 C 1.46501 * 120.00094 * 270.00147 * 3 2 1 5 5 C 1.50699 * 109.46929 * 269.99939 * 4 3 2 6 6 H 1.07997 * 120.00216 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99785 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99948 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99968 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.46946 * 90.00050 * 9 7 5 11 11 H 1.48499 * 109.46895 * 209.99515 * 9 7 5 12 12 H 1.48498 * 109.47258 * 329.99595 * 9 7 5 13 13 C 1.34774 * 119.99896 * 89.99735 * 3 2 1 14 14 O 1.21279 * 120.00258 * 179.97438 * 13 3 2 15 15 C 1.50700 * 120.00286 * 0.02562 * 13 3 2 16 16 C 1.50696 * 109.47355 * 179.97438 * 15 13 3 17 17 C 1.38225 * 119.91049 * 89.99804 * 16 15 13 18 18 C 1.38666 * 120.08888 * 179.97438 * 17 16 15 19 19 O 1.35996 * 120.04827 * 180.02562 * 18 17 16 20 20 C 1.42903 * 116.99756 * 359.97438 * 19 18 17 21 21 C 1.38986 * 119.91022 * 0.27480 * 18 17 16 22 22 O 1.36093 * 120.08926 * 179.70702 * 21 18 17 23 23 C 1.38975 * 119.81948 * 359.45161 * 21 18 17 24 24 O 1.35993 * 120.04574 * 180.25064 * 23 21 18 25 25 C 1.42901 * 117.00044 * 180.29753 * 24 23 21 26 26 C 1.38228 * 119.90763 * 269.97525 * 16 15 13 27 27 H 1.09004 * 109.47144 * 300.00230 * 1 2 3 28 28 H 1.09000 * 109.46941 * 59.99348 * 1 2 3 29 29 H 1.08998 * 109.47594 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46923 * 240.00103 * 2 1 3 31 31 H 1.08997 * 109.47085 * 119.99898 * 2 1 3 32 32 H 1.09000 * 109.46818 * 30.00157 * 4 3 2 33 33 H 1.08998 * 109.47187 * 150.00271 * 4 3 2 34 34 H 0.96999 * 119.99938 * 180.02562 * 8 7 5 35 35 H 1.09002 * 109.47180 * 59.99476 * 15 13 3 36 36 H 1.09000 * 109.46658 * 299.99797 * 15 13 3 37 37 H 1.07998 * 119.95778 * 0.02562 * 17 16 15 38 38 H 1.09002 * 109.47382 * 300.00415 * 20 19 18 39 39 H 1.09001 * 109.46938 * 180.02562 * 20 19 18 40 40 H 1.09004 * 109.46926 * 60.00522 * 20 19 18 41 41 H 0.96691 * 114.00564 * 90.00022 * 22 21 18 42 42 H 1.09000 * 109.46991 * 180.02562 * 25 24 23 43 43 H 1.09000 * 109.47144 * 300.00068 * 25 24 23 44 44 H 1.08994 * 109.47150 * 60.00463 * 25 24 23 45 45 H 1.08000 * 119.96263 * 0.04125 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3427 1.2301 -1.0962 7 6 4.1491 2.3896 -2.8779 8 7 5.3914 2.1833 -3.2574 9 14 3.0128 3.4351 -3.9291 10 1 3.1164 4.8554 -3.5080 11 1 3.4058 3.3120 -5.3559 12 1 1.6131 2.9692 -3.7592 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9923 1.3060 2.4723 16 6 2.3192 2.2291 3.6177 17 6 1.3391 3.0507 4.1421 18 6 1.6357 3.9012 5.1964 19 8 0.6707 4.7088 5.7120 20 6 -0.6268 4.6298 5.1184 21 6 2.9219 3.9308 5.7222 22 8 3.2185 4.7684 6.7530 23 6 3.9030 3.0990 5.1959 24 8 5.1617 3.1206 5.7102 25 6 6.1206 2.2435 5.1157 26 6 3.5982 2.2514 4.1414 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5817 1.6877 -2.0283 33 1 2.0957 3.1410 -1.1384 34 1 5.7175 2.5738 -4.0833 35 1 2.6228 0.4186 2.5299 36 1 0.9444 1.0115 2.5302 37 1 0.3408 3.0297 3.7306 38 1 -0.5598 4.8909 4.0622 39 1 -1.2997 5.3240 5.6219 40 1 -1.0107 3.6144 5.2180 41 1 3.0831 4.3791 7.6276 42 1 7.0805 2.3599 5.6189 43 1 5.7810 1.2126 5.2156 44 1 6.2316 2.4888 4.0595 45 1 4.3614 1.6082 3.7288 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279090252.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:46 Heat of formation + Delta-G solvation = -148.830081 kcal Electronic energy + Delta-G solvation = -28008.042076 eV Core-core repulsion = 23991.067974 eV Total energy + Delta-G solvation = -4016.974101 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.86433 -40.70970 -39.99812 -38.15053 -37.65323 -36.84797 -34.87858 -32.91838 -31.74329 -30.68862 -29.97150 -28.75827 -28.64588 -26.97663 -24.55297 -24.15111 -23.01671 -22.73697 -20.12796 -19.65115 -19.11061 -18.61288 -18.16990 -17.96868 -17.51565 -17.18216 -17.05887 -16.46659 -16.37206 -16.17814 -15.81664 -15.58599 -14.93886 -14.74900 -14.71981 -14.64996 -14.43158 -13.90568 -13.63440 -13.49573 -13.34394 -13.23588 -13.15309 -12.72653 -12.56359 -12.55366 -12.44159 -12.37047 -12.09368 -12.01772 -11.82380 -11.74371 -11.67600 -11.60036 -10.83885 -10.65008 -9.39824 -9.23393 -9.20804 -8.34852 -6.39104 0.10043 0.30708 1.30569 1.35121 1.42760 1.81527 1.83886 2.25122 2.29701 2.62801 2.67030 3.00084 3.16020 3.52845 3.82751 3.89482 3.99140 4.14386 4.21293 4.26820 4.31275 4.32777 4.38718 4.44056 4.51524 4.52366 4.65887 4.67729 4.70463 4.74947 4.81369 4.87554 4.98371 5.04600 5.06538 5.07189 5.35055 5.42711 5.44623 5.48512 5.67507 6.18662 6.23898 6.24113 6.62247 6.73301 6.88011 7.21849 7.45088 8.82033 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.012492 B = 0.003665 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.949936 B = 7637.370282 C = 8378.053547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.095 3.905 3 N -0.599 5.599 4 C 0.226 3.774 5 C -0.533 4.533 6 H 0.030 0.970 7 C 0.012 3.988 8 N -0.945 5.945 9 Si 0.944 3.056 10 H -0.280 1.280 11 H -0.275 1.275 12 H -0.237 1.237 13 C 0.501 3.499 14 O -0.590 6.590 15 C -0.091 4.091 16 C 0.003 3.997 17 C -0.217 4.217 18 C 0.134 3.866 19 O -0.321 6.321 20 C 0.016 3.984 21 C 0.015 3.985 22 O -0.487 6.487 23 C 0.130 3.870 24 O -0.321 6.321 25 C 0.018 3.982 26 C -0.225 4.225 27 H 0.066 0.934 28 H 0.043 0.957 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.048 0.952 33 H 0.014 0.986 34 H 0.268 0.732 35 H 0.126 0.874 36 H 0.140 0.860 37 H 0.153 0.847 38 H 0.053 0.947 39 H 0.124 0.876 40 H 0.077 0.923 41 H 0.395 0.605 42 H 0.126 0.874 43 H 0.075 0.925 44 H 0.045 0.955 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.408 -6.029 18.832 23.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.026 4.026 3 N -0.330 5.330 4 C 0.103 3.897 5 C -0.572 4.572 6 H 0.049 0.951 7 C -0.186 4.186 8 N -0.586 5.586 9 Si 0.767 3.233 10 H -0.206 1.206 11 H -0.200 1.200 12 H -0.160 1.160 13 C 0.290 3.710 14 O -0.471 6.471 15 C -0.131 4.131 16 C 0.002 3.998 17 C -0.235 4.235 18 C 0.087 3.913 19 O -0.234 6.234 20 C -0.078 4.078 21 C -0.031 4.031 22 O -0.297 6.297 23 C 0.083 3.917 24 O -0.234 6.234 25 C -0.076 4.076 26 C -0.244 4.244 27 H 0.085 0.915 28 H 0.062 0.938 29 H 0.113 0.887 30 H 0.089 0.911 31 H 0.119 0.881 32 H 0.066 0.934 33 H 0.032 0.968 34 H 0.077 0.923 35 H 0.144 0.856 36 H 0.158 0.842 37 H 0.171 0.829 38 H 0.071 0.929 39 H 0.142 0.858 40 H 0.095 0.905 41 H 0.251 0.749 42 H 0.144 0.856 43 H 0.093 0.907 44 H 0.064 0.936 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -12.862 -4.779 18.543 23.067 hybrid contribution 0.339 0.146 -0.926 0.996 sum -12.523 -4.633 17.617 22.106 Atomic orbital electron populations 1.22173 0.93900 1.03701 1.02192 1.21827 0.95701 0.80945 1.04173 1.48054 1.64177 1.15255 1.05554 1.19264 0.94729 0.92897 0.82785 1.21577 0.97144 1.31917 1.06557 0.95121 1.25819 0.96638 0.97175 0.99007 1.70045 1.17356 1.46658 1.24501 0.85767 0.80662 0.78942 0.77904 1.20589 1.19967 1.15997 1.21097 0.77132 0.86522 0.86246 1.90688 1.47501 1.20846 1.88015 1.20816 1.06962 0.98044 0.87234 1.19105 0.92351 0.94885 0.93486 1.21083 1.02039 1.00741 0.99675 1.18986 0.87771 0.90916 0.93586 1.86090 1.20435 1.58725 1.58152 1.23425 0.80541 1.04581 0.99262 1.16920 0.89446 0.99066 0.97688 1.84911 1.89047 1.39318 1.16473 1.19063 0.85146 0.93790 0.93659 1.86069 1.17082 1.62125 1.58117 1.23375 0.91673 0.93637 0.98918 1.21098 0.98471 1.04864 0.99925 0.91528 0.93768 0.88734 0.91142 0.88059 0.93411 0.96769 0.92344 0.85580 0.84176 0.82912 0.92859 0.85753 0.90491 0.74855 0.85569 0.90659 0.93596 0.84309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 10.24 71.98 0.74 -2.34 16 2 C 0.10 2.51 5.93 86.38 0.51 3.02 16 3 N -0.60 -22.99 2.46 -826.17 -2.03 -25.02 16 4 C 0.23 10.84 4.23 85.63 0.36 11.21 16 5 C -0.53 -31.19 9.94 25.60 0.25 -30.93 16 6 H 0.03 1.99 8.06 -2.91 -0.02 1.97 16 7 C 0.01 0.68 5.47 84.65 0.46 1.15 16 8 N -0.95 -59.87 13.96 21.45 0.30 -59.57 16 9 Si 0.94 44.68 27.47 68.60 1.88 46.57 16 10 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 11 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 12 H -0.24 -9.99 6.54 99.48 0.65 -9.34 16 13 C 0.50 19.30 7.67 87.66 0.67 19.97 16 14 O -0.59 -29.60 15.61 -3.03 -0.05 -29.65 16 15 C -0.09 -2.29 4.38 29.10 0.13 -2.16 16 16 C 0.00 0.07 4.37 -19.87 -0.09 -0.02 16 17 C -0.22 -5.82 8.69 22.37 0.19 -5.63 16 18 C 0.13 3.88 6.70 22.55 0.15 4.03 16 19 O -0.32 -8.25 10.28 -79.57 -0.82 -9.07 16 20 C 0.02 0.26 9.81 113.37 1.11 1.37 16 21 C 0.01 0.47 6.73 22.63 0.15 0.62 16 22 O -0.49 -14.18 13.07 -70.46 -0.92 -15.11 16 23 C 0.13 4.04 6.70 22.55 0.15 4.19 16 24 O -0.32 -9.29 10.28 -79.53 -0.82 -10.11 16 25 C 0.02 0.39 9.81 113.37 1.11 1.50 16 26 C -0.22 -6.74 8.69 22.37 0.19 -6.54 16 27 H 0.07 1.09 7.22 -2.39 -0.02 1.07 16 28 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.07 2.06 8.07 -2.39 -0.02 2.04 16 31 H 0.10 1.99 6.44 -2.39 -0.02 1.97 16 32 H 0.05 2.11 7.13 -2.39 -0.02 2.09 16 33 H 0.01 0.75 6.85 -2.39 -0.02 0.73 16 34 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 35 H 0.13 2.55 7.34 -2.39 -0.02 2.53 16 36 H 0.14 2.35 7.13 -2.39 -0.02 2.33 16 37 H 0.15 3.27 6.29 -2.91 -0.02 3.26 16 38 H 0.05 0.93 7.66 -2.39 -0.02 0.91 16 39 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.08 0.92 7.66 -2.38 -0.02 0.90 16 41 H 0.40 7.42 9.06 -74.06 -0.67 6.74 16 42 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.07 1.30 7.66 -2.39 -0.02 1.28 16 44 H 0.05 1.12 7.66 -2.39 -0.02 1.10 16 45 H 0.14 3.84 6.29 -2.91 -0.02 3.83 16 Total: -1.00 -87.06 374.63 3.95 -83.10 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 0.29 Total: 19.41 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: 6.11 Total: -0.56 kcal Atomic # 7 Polarization: -82.86 SS G_CDS: -1.73 Total: -84.59 kcal Atomic # 8 Polarization: -61.33 SS G_CDS: -2.60 Total: -63.93 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.88 Total: 46.57 kcal Total: -87.06 3.95 -83.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279090252.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.725 kcal (2) G-P(sol) polarization free energy of solvation -87.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds