Wall clock time and date at job start Tue Mar 31 2020 14:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35991 * 117.00364 * 2 1 4 4 C 1.38670 * 120.04381 * 0.02562 * 3 2 1 5 5 C 1.38228 * 120.09051 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.90960 * 179.97438 * 5 4 3 7 7 C 1.50695 * 109.46925 * 90.00468 * 6 5 4 8 8 O 1.21274 * 120.00269 * 359.97438 * 7 6 5 9 9 N 1.34781 * 119.99804 * 179.97438 * 7 6 5 10 10 C 1.46503 * 119.99931 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47002 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46987 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47038 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00131 * 359.97438 * 13 12 11 15 15 C 1.37872 * 119.99901 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00302 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 120.00080 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.47482 * 89.99875 * 17 15 13 19 19 H 1.48499 * 109.46873 * 209.99906 * 17 15 13 20 20 H 1.48502 * 109.47023 * 329.99544 * 17 15 13 21 21 C 1.38228 * 120.17656 * 0.02562 * 5 4 3 22 22 C 1.38665 * 120.09327 * 359.97438 * 21 5 4 23 23 O 1.35998 * 120.04910 * 180.02562 * 22 21 5 24 24 C 1.42902 * 116.99524 * 0.02562 * 23 22 21 25 25 C 1.38974 * 120.04780 * 179.72805 * 3 2 1 26 26 O 1.36099 * 120.08712 * 359.97438 * 25 3 2 27 27 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46938 * 59.99845 * 1 2 3 29 29 H 1.09004 * 109.46926 * 299.99967 * 1 2 3 30 30 H 1.08003 * 119.95597 * 359.97438 * 4 3 2 31 31 H 1.09007 * 109.46711 * 210.00291 * 6 5 4 32 32 H 1.08999 * 109.47223 * 329.99898 * 6 5 4 33 33 H 0.97001 * 120.00053 * 359.97438 * 9 7 6 34 34 H 1.08994 * 109.47456 * 300.00132 * 10 9 7 35 35 H 1.09003 * 109.46829 * 59.99857 * 10 9 7 36 36 H 1.09003 * 109.47317 * 300.00127 * 11 10 9 37 37 H 1.08999 * 109.47132 * 59.99854 * 11 10 9 38 38 H 1.09000 * 109.46443 * 299.99545 * 12 11 10 39 39 H 1.08995 * 109.47016 * 59.99845 * 12 11 10 40 40 H 0.96992 * 120.00680 * 180.02562 * 16 15 13 41 41 H 1.08005 * 119.95608 * 180.02562 * 21 5 4 42 42 H 1.09003 * 109.47475 * 60.00174 * 24 23 22 43 43 H 1.09005 * 109.46842 * 180.02562 * 24 23 22 44 44 H 1.09000 * 109.47269 * 299.99771 * 24 23 22 45 45 H 0.96702 * 114.00122 * 90.00252 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2922 2.3753 0.0005 5 6 1.9188 3.6074 0.0011 6 6 1.0951 4.8693 0.0011 7 6 0.8201 5.2896 1.4218 8 8 1.2502 4.6293 2.3436 9 7 0.0962 6.3995 1.6681 10 6 -0.1716 6.8079 3.0494 11 6 -1.0067 8.0898 3.0494 12 6 -1.2859 8.5167 4.4919 13 6 -2.1089 9.7790 4.4919 14 1 -2.4031 10.2319 3.5566 15 6 -2.4864 10.3559 5.6859 16 7 -3.2043 11.4578 5.6860 17 14 -1.9769 9.5730 7.3037 18 1 -0.6695 10.1306 7.7334 19 1 -3.0024 9.8622 8.3381 20 1 -1.8541 8.1038 7.1256 21 6 3.2989 3.6850 0.0005 22 6 4.0605 2.5262 0.0000 23 8 5.4183 2.6036 0.0000 24 6 5.9934 3.9118 0.0011 25 6 3.4343 1.2855 0.0057 26 8 4.1781 0.1458 0.0118 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 0.2137 2.3188 0.0005 31 1 1.6421 5.6601 -0.5125 32 1 0.1515 4.6873 -0.5132 33 1 -0.2475 6.9279 0.9309 34 1 -0.7190 6.0172 3.5624 35 1 0.7720 6.9893 3.5640 36 1 -0.4588 8.8804 2.5365 37 1 -1.9502 7.9088 2.5345 38 1 -1.8336 7.7262 5.0050 39 1 -0.3421 8.6978 5.0063 40 1 -3.4695 11.8639 6.5260 41 1 3.7848 4.6496 0.0014 42 1 5.6693 4.4505 0.8917 43 1 7.0804 3.8308 0.0006 44 1 5.6692 4.4520 -0.8883 45 1 4.3969 -0.1859 -0.8698 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279274708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:16 Heat of formation + Delta-G solvation = -139.608481 kcal Electronic energy + Delta-G solvation = -26531.712869 eV Core-core repulsion = 22515.138647 eV Total energy + Delta-G solvation = -4016.574223 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.07496 -39.61902 -39.26785 -37.35216 -36.79681 -35.49639 -33.37212 -32.17409 -31.32638 -29.92917 -28.60501 -28.14193 -27.18571 -26.05321 -23.12763 -22.27548 -22.02915 -20.80490 -19.97299 -18.99573 -17.91711 -17.41862 -17.11342 -16.79233 -16.73344 -16.35203 -15.79644 -15.70337 -15.52950 -15.40192 -14.89716 -14.39014 -14.23696 -13.98974 -13.94414 -13.58728 -12.95032 -12.89540 -12.71580 -12.52538 -12.20834 -11.99906 -11.97092 -11.82430 -11.78567 -11.41017 -11.12648 -10.92379 -10.88999 -10.86666 -10.24481 -10.01358 -9.81564 -9.61157 -9.26463 -8.92303 -8.58668 -8.43115 -8.42454 -6.09490 -4.08464 0.90370 1.10896 2.53138 2.64632 3.10763 3.28968 3.34516 3.36776 3.40934 3.50123 3.93673 4.25694 4.41603 4.57088 4.73829 4.76035 4.83152 4.84609 4.87895 4.88449 4.91725 5.13028 5.16878 5.19788 5.22032 5.24578 5.43934 5.51097 5.60696 5.69916 5.86315 5.96633 6.08109 6.19877 6.29750 6.39635 6.64389 6.74580 6.89233 6.96268 7.18679 7.32101 7.55829 7.58526 7.73042 8.26390 8.46755 8.94016 9.52746 11.03669 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.017864 B = 0.002169 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.040740 B =12906.410220 C =13560.035220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.305 6.305 3 C 0.143 3.857 4 C -0.215 4.215 5 C 0.010 3.990 6 C -0.106 4.106 7 C 0.508 3.492 8 O -0.533 6.533 9 N -0.727 5.727 10 C 0.114 3.886 11 C -0.113 4.113 12 C -0.011 4.011 13 C -0.523 4.523 14 H 0.072 0.928 15 C 0.067 3.933 16 N -0.903 5.903 17 Si 0.880 3.120 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.264 1.264 21 C -0.215 4.215 22 C 0.142 3.858 23 O -0.305 6.305 24 C 0.025 3.975 25 C 0.037 3.963 26 O -0.473 6.473 27 H 0.102 0.898 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.134 0.866 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.400 0.600 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.018 0.982 39 H 0.014 0.986 40 H 0.264 0.736 41 H 0.133 0.867 42 H 0.059 0.941 43 H 0.102 0.898 44 H 0.057 0.943 45 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.944 -19.874 -19.169 30.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.218 6.218 3 C 0.096 3.904 4 C -0.234 4.234 5 C 0.009 3.991 6 C -0.146 4.146 7 C 0.293 3.707 8 O -0.410 6.410 9 N -0.378 5.378 10 C -0.009 4.009 11 C -0.151 4.151 12 C -0.049 4.049 13 C -0.561 4.561 14 H 0.090 0.910 15 C -0.135 4.135 16 N -0.541 5.541 17 Si 0.707 3.293 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.189 1.189 21 C -0.234 4.234 22 C 0.096 3.904 23 O -0.218 6.218 24 C -0.070 4.070 25 C -0.009 4.009 26 O -0.281 6.281 27 H 0.120 0.880 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.151 0.849 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.234 0.766 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.037 0.963 39 H 0.032 0.968 40 H 0.073 0.927 41 H 0.151 0.849 42 H 0.078 0.922 43 H 0.120 0.880 44 H 0.075 0.925 45 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 13.354 -20.511 -17.737 30.227 hybrid contribution -0.286 0.483 0.115 0.573 sum 13.068 -20.029 -17.622 29.706 Atomic orbital electron populations 1.23140 0.78012 1.04157 1.01721 1.86121 1.21522 1.25866 1.88282 1.18893 0.90690 0.84904 0.95904 1.20874 1.00137 0.91049 1.11339 1.18808 0.92563 0.93268 0.94447 1.20732 1.01727 0.96418 0.95754 1.20382 0.78584 0.80907 0.90783 1.90749 1.50756 1.53308 1.46151 1.46172 1.54600 1.26978 1.10059 1.21656 1.00198 0.97876 0.81137 1.21703 0.98410 0.93898 1.01063 1.19505 0.96724 0.97233 0.91474 1.21085 1.32744 1.07725 0.94503 0.91009 1.25029 0.94554 0.94641 0.99250 1.69906 1.37671 1.19573 1.26996 0.86778 0.78464 0.80552 0.83522 1.20233 1.21340 1.18906 1.20872 0.93820 0.97367 1.11344 1.18897 0.82944 0.92655 0.95910 1.86123 1.16575 1.30808 1.88286 1.23140 0.99237 0.82933 1.01722 1.16672 0.86160 0.84543 1.13567 1.84988 1.71571 1.38769 1.32725 0.87997 0.92484 0.92217 0.84873 0.87577 0.87575 0.76612 0.91809 0.91821 0.92116 0.92087 0.96326 0.96759 0.92667 0.84874 0.92217 0.87999 0.92483 0.76764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.39 10.28 -34.30 -0.35 -3.75 16 3 C 0.14 1.71 6.70 -39.15 -0.26 1.44 16 4 C -0.21 -2.34 8.69 -39.43 -0.34 -2.68 16 5 C 0.01 0.11 4.37 -104.63 -0.46 -0.35 16 6 C -0.11 -0.92 5.83 -29.04 -0.17 -1.09 16 7 C 0.51 6.62 7.82 -10.99 -0.09 6.54 16 8 O -0.53 -9.45 16.03 5.56 0.09 -9.36 16 9 N -0.73 -9.04 5.56 -60.30 -0.33 -9.38 16 10 C 0.11 1.82 5.67 -4.04 -0.02 1.79 16 11 C -0.11 -2.03 5.27 -26.73 -0.14 -2.17 16 12 C -0.01 -0.26 4.04 -27.88 -0.11 -0.38 16 13 C -0.52 -14.54 9.66 -34.44 -0.33 -14.87 16 14 H 0.07 2.12 7.99 -52.49 -0.42 1.71 16 15 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 16 N -0.90 -27.51 13.96 55.43 0.77 -26.73 16 17 Si 0.88 21.61 27.47 -169.99 -4.67 16.95 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 20 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 21 C -0.22 -2.34 8.69 -39.43 -0.34 -2.68 16 22 C 0.14 1.70 6.70 -39.15 -0.26 1.44 16 23 O -0.31 -3.39 10.28 -34.31 -0.35 -3.74 16 24 C 0.02 0.18 9.81 101.05 0.99 1.17 16 25 C 0.04 0.47 6.73 -39.03 -0.26 0.20 16 26 O -0.47 -5.67 13.07 -45.31 -0.59 -6.26 16 27 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.31 7.66 -51.93 -0.40 -0.08 16 29 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 30 H 0.13 1.19 6.29 -52.48 -0.33 0.86 16 31 H 0.11 0.65 8.08 -51.92 -0.42 0.23 16 32 H 0.11 0.65 8.08 -51.93 -0.42 0.23 16 33 H 0.40 3.75 8.47 -40.82 -0.35 3.41 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 39 H 0.01 0.33 7.57 -51.93 -0.39 -0.07 16 40 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.13 1.19 6.29 -52.48 -0.33 0.86 16 42 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 43 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.31 7.66 -51.93 -0.40 -0.08 16 45 H 0.38 2.70 9.07 45.56 0.41 3.11 16 LS Contribution 379.51 15.07 5.72 5.72 Total: -1.00 -37.18 379.51 -6.54 -43.72 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -5.91 Total: 1.48 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -0.91 Total: -8.64 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: 0.44 Total: -36.11 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -1.21 Total: -23.11 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -37.18 -6.54 -43.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279274708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.891 kcal (2) G-P(sol) polarization free energy of solvation -37.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds