Wall clock time and date at job start Tue Mar 31 2020 14:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35991 * 117.00364 * 2 1 4 4 C 1.38670 * 120.04381 * 0.02562 * 3 2 1 5 5 C 1.38228 * 120.09051 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.90960 * 179.97438 * 5 4 3 7 7 C 1.50695 * 109.46925 * 90.00468 * 6 5 4 8 8 O 1.21274 * 120.00269 * 359.97438 * 7 6 5 9 9 N 1.34781 * 119.99804 * 179.97438 * 7 6 5 10 10 C 1.46503 * 119.99931 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47002 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46987 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47038 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00131 * 359.97438 * 13 12 11 15 15 C 1.37872 * 119.99901 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00302 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 120.00080 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.47482 * 89.99875 * 17 15 13 19 19 H 1.48499 * 109.46873 * 209.99906 * 17 15 13 20 20 H 1.48502 * 109.47023 * 329.99544 * 17 15 13 21 21 C 1.38228 * 120.17656 * 0.02562 * 5 4 3 22 22 C 1.38665 * 120.09327 * 359.97438 * 21 5 4 23 23 O 1.35998 * 120.04910 * 180.02562 * 22 21 5 24 24 C 1.42902 * 116.99524 * 0.02562 * 23 22 21 25 25 C 1.38974 * 120.04780 * 179.72805 * 3 2 1 26 26 O 1.36099 * 120.08712 * 359.97438 * 25 3 2 27 27 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46938 * 59.99845 * 1 2 3 29 29 H 1.09004 * 109.46926 * 299.99967 * 1 2 3 30 30 H 1.08003 * 119.95597 * 359.97438 * 4 3 2 31 31 H 1.09007 * 109.46711 * 210.00291 * 6 5 4 32 32 H 1.08999 * 109.47223 * 329.99898 * 6 5 4 33 33 H 0.97001 * 120.00053 * 359.97438 * 9 7 6 34 34 H 1.08994 * 109.47456 * 300.00132 * 10 9 7 35 35 H 1.09003 * 109.46829 * 59.99857 * 10 9 7 36 36 H 1.09003 * 109.47317 * 300.00127 * 11 10 9 37 37 H 1.08999 * 109.47132 * 59.99854 * 11 10 9 38 38 H 1.09000 * 109.46443 * 299.99545 * 12 11 10 39 39 H 1.08995 * 109.47016 * 59.99845 * 12 11 10 40 40 H 0.96992 * 120.00680 * 180.02562 * 16 15 13 41 41 H 1.08005 * 119.95608 * 180.02562 * 21 5 4 42 42 H 1.09003 * 109.47475 * 60.00174 * 24 23 22 43 43 H 1.09005 * 109.46842 * 180.02562 * 24 23 22 44 44 H 1.09000 * 109.47269 * 299.99771 * 24 23 22 45 45 H 0.96702 * 114.00122 * 90.00252 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2922 2.3753 0.0005 5 6 1.9188 3.6074 0.0011 6 6 1.0951 4.8693 0.0011 7 6 0.8201 5.2896 1.4218 8 8 1.2502 4.6293 2.3436 9 7 0.0962 6.3995 1.6681 10 6 -0.1716 6.8079 3.0494 11 6 -1.0067 8.0898 3.0494 12 6 -1.2859 8.5167 4.4919 13 6 -2.1089 9.7790 4.4919 14 1 -2.4031 10.2319 3.5566 15 6 -2.4864 10.3559 5.6859 16 7 -3.2043 11.4578 5.6860 17 14 -1.9769 9.5730 7.3037 18 1 -0.6695 10.1306 7.7334 19 1 -3.0024 9.8622 8.3381 20 1 -1.8541 8.1038 7.1256 21 6 3.2989 3.6850 0.0005 22 6 4.0605 2.5262 0.0000 23 8 5.4183 2.6036 0.0000 24 6 5.9934 3.9118 0.0011 25 6 3.4343 1.2855 0.0057 26 8 4.1781 0.1458 0.0118 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 0.2137 2.3188 0.0005 31 1 1.6421 5.6601 -0.5125 32 1 0.1515 4.6873 -0.5132 33 1 -0.2475 6.9279 0.9309 34 1 -0.7190 6.0172 3.5624 35 1 0.7720 6.9893 3.5640 36 1 -0.4588 8.8804 2.5365 37 1 -1.9502 7.9088 2.5345 38 1 -1.8336 7.7262 5.0050 39 1 -0.3421 8.6978 5.0063 40 1 -3.4695 11.8639 6.5260 41 1 3.7848 4.6496 0.0014 42 1 5.6693 4.4505 0.8917 43 1 7.0804 3.8308 0.0006 44 1 5.6692 4.4520 -0.8883 45 1 4.3969 -0.1859 -0.8698 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279274708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:16 Heat of formation + Delta-G solvation = -167.757137 kcal Electronic energy + Delta-G solvation = -26532.933487 eV Core-core repulsion = 22515.138647 eV Total energy + Delta-G solvation = -4017.794840 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.85750 -40.64981 -40.00147 -38.15527 -37.65549 -36.84167 -35.13020 -33.46871 -32.63220 -30.68489 -29.64433 -28.75024 -28.43483 -26.92665 -24.65404 -23.01790 -22.99531 -22.22527 -21.20609 -19.82518 -19.00554 -18.64009 -18.18111 -17.94493 -17.52432 -17.12776 -16.87814 -16.70087 -16.46332 -16.21691 -16.14434 -15.60731 -15.56665 -14.85078 -14.72843 -14.72066 -14.68428 -13.88359 -13.79222 -13.51007 -13.46862 -13.23158 -12.77625 -12.71232 -12.62966 -12.52789 -12.43453 -12.11783 -11.91336 -11.77913 -11.67549 -11.62705 -11.58977 -11.32867 -10.85198 -10.76554 -10.05826 -9.24111 -9.20808 -8.29778 -6.33344 0.09287 0.30939 1.35973 1.37957 1.49250 1.67279 1.84386 2.19173 2.35567 2.63602 2.67737 3.06058 3.17189 3.51880 3.91144 3.96978 4.00220 4.15169 4.18257 4.21084 4.29939 4.30568 4.36380 4.36774 4.51622 4.54729 4.55694 4.67276 4.71223 4.74487 4.89665 4.90256 4.98710 5.04803 5.07843 5.36546 5.42154 5.42371 5.52708 5.56369 5.65221 6.19767 6.24927 6.27269 6.62070 6.75113 6.86951 7.30682 7.31765 8.86477 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.017864 B = 0.002169 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.040740 B =12906.410220 C =13560.035220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.324 6.324 3 C 0.129 3.871 4 C -0.220 4.220 5 C 0.000 4.000 6 C -0.096 4.096 7 C 0.509 3.491 8 O -0.584 6.584 9 N -0.716 5.716 10 C 0.127 3.873 11 C -0.099 4.099 12 C -0.014 4.014 13 C -0.529 4.529 14 H 0.040 0.960 15 C 0.005 3.995 16 N -0.950 5.950 17 Si 0.945 3.055 18 H -0.268 1.268 19 H -0.285 1.285 20 H -0.249 1.249 21 C -0.220 4.220 22 C 0.129 3.871 23 O -0.324 6.324 24 C 0.017 3.983 25 C 0.013 3.987 26 O -0.491 6.491 27 H 0.121 0.879 28 H 0.075 0.925 29 H 0.055 0.945 30 H 0.151 0.849 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.418 0.582 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.019 0.981 39 H 0.018 0.982 40 H 0.266 0.734 41 H 0.151 0.849 42 H 0.055 0.945 43 H 0.121 0.879 44 H 0.075 0.925 45 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.363 -20.480 -20.116 31.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.237 6.237 3 C 0.083 3.917 4 C -0.239 4.239 5 C -0.001 4.001 6 C -0.135 4.135 7 C 0.296 3.704 8 O -0.464 6.464 9 N -0.368 5.368 10 C 0.003 3.997 11 C -0.137 4.137 12 C -0.052 4.052 13 C -0.567 4.567 14 H 0.058 0.942 15 C -0.192 4.192 16 N -0.590 5.590 17 Si 0.769 3.231 18 H -0.193 1.193 19 H -0.211 1.211 20 H -0.173 1.173 21 C -0.238 4.238 22 C 0.083 3.917 23 O -0.237 6.237 24 C -0.077 4.077 25 C -0.034 4.034 26 O -0.301 6.301 27 H 0.140 0.860 28 H 0.093 0.907 29 H 0.074 0.926 30 H 0.168 0.832 31 H 0.157 0.843 32 H 0.157 0.843 33 H 0.255 0.745 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.037 0.963 39 H 0.036 0.964 40 H 0.075 0.925 41 H 0.168 0.832 42 H 0.074 0.926 43 H 0.140 0.860 44 H 0.093 0.907 45 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 13.769 -21.111 -18.743 31.410 hybrid contribution -0.425 0.685 0.328 0.871 sum 13.345 -20.426 -18.414 30.568 Atomic orbital electron populations 1.23405 0.76175 1.05772 1.02369 1.86093 1.23506 1.25859 1.88286 1.19075 0.90782 0.85615 0.96239 1.21135 1.01021 0.90859 1.10837 1.19108 0.92812 0.94093 0.94055 1.20786 1.03519 0.96252 0.92904 1.21096 0.77231 0.79942 0.92106 1.90740 1.52722 1.54816 1.48154 1.45970 1.54465 1.27234 1.09147 1.21252 0.99046 0.96324 0.83115 1.21471 0.99253 0.95088 0.97895 1.19480 0.95827 0.94921 0.94949 1.21465 1.32745 1.09210 0.93264 0.94207 1.25965 0.94716 0.95185 1.03346 1.70049 1.39487 1.21402 1.28094 0.85727 0.78281 0.80350 0.78720 1.19319 1.21073 1.17285 1.21133 0.94138 0.97741 1.10836 1.19078 0.83489 0.92912 0.96241 1.86095 1.16338 1.33019 1.88288 1.23405 1.00278 0.81672 1.02370 1.17013 0.86811 0.84945 1.14585 1.84913 1.71717 1.38982 1.34464 0.86037 0.90656 0.92630 0.83177 0.84263 0.84268 0.74516 0.92848 0.92785 0.91514 0.91530 0.96305 0.96406 0.92528 0.83172 0.92627 0.86039 0.90655 0.74890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.32 -7.10 10.28 -79.51 -0.82 -7.92 16 3 C 0.13 3.06 6.70 22.55 0.15 3.21 16 4 C -0.22 -4.45 8.69 22.37 0.19 -4.26 16 5 C 0.00 0.00 4.37 -19.87 -0.09 -0.08 16 6 C -0.10 -1.29 5.83 29.10 0.17 -1.12 16 7 C 0.51 11.89 7.82 87.65 0.69 12.57 16 8 O -0.58 -19.93 16.03 -3.01 -0.05 -19.98 16 9 N -0.72 -15.72 5.56 -463.06 -2.57 -18.30 16 10 C 0.13 3.79 5.67 86.38 0.49 4.28 16 11 C -0.10 -3.39 5.27 30.60 0.16 -3.23 16 12 C -0.01 -0.62 4.04 29.85 0.12 -0.50 16 13 C -0.53 -29.50 9.66 25.60 0.25 -29.25 16 14 H 0.04 2.40 7.99 -2.91 -0.02 2.38 16 15 C 0.00 0.28 5.47 84.65 0.46 0.74 16 16 N -0.95 -58.74 13.96 21.45 0.30 -58.44 16 17 Si 0.95 44.12 27.47 68.60 1.88 46.01 16 18 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 19 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 20 H -0.25 -10.92 6.54 99.48 0.65 -10.27 16 21 C -0.22 -4.45 8.69 22.37 0.19 -4.25 16 22 C 0.13 3.05 6.70 22.55 0.15 3.20 16 23 O -0.32 -7.10 10.28 -79.58 -0.82 -7.91 16 24 C 0.02 0.22 9.81 113.37 1.11 1.33 16 25 C 0.01 0.32 6.73 22.62 0.15 0.47 16 26 O -0.49 -12.08 13.07 -70.52 -0.92 -13.00 16 27 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.07 0.68 7.66 -2.39 -0.02 0.67 16 29 H 0.06 0.76 7.66 -2.38 -0.02 0.74 16 30 H 0.15 2.35 6.29 -2.91 -0.02 2.34 16 31 H 0.14 1.02 8.08 -2.38 -0.02 1.00 16 32 H 0.14 1.02 8.08 -2.39 -0.02 1.00 16 33 H 0.42 6.28 8.47 -92.71 -0.79 5.49 16 34 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.05 1.73 8.14 -2.39 -0.02 1.72 16 36 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.02 0.84 7.20 -2.39 -0.02 0.82 16 39 H 0.02 0.78 7.57 -2.39 -0.02 0.76 16 40 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 41 H 0.15 2.35 6.29 -2.91 -0.02 2.33 16 42 H 0.06 0.76 7.66 -2.39 -0.02 0.74 16 43 H 0.12 1.03 8.14 -2.38 -0.02 1.01 16 44 H 0.07 0.68 7.66 -2.39 -0.02 0.66 16 45 H 0.39 5.90 9.07 -74.06 -0.67 5.23 16 Total: -1.00 -82.37 379.51 1.84 -80.53 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -0.49 Total: 14.57 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: 5.32 Total: -15.55 kcal Atomic # 7 Polarization: -74.46 SS G_CDS: -2.27 Total: -76.74 kcal Atomic # 8 Polarization: -46.22 SS G_CDS: -2.61 Total: -48.82 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.88 Total: 46.01 kcal Total: -82.37 1.84 -80.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279274708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.224 kcal (2) G-P(sol) polarization free energy of solvation -82.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds