Wall clock time and date at job start Tue Mar 31 2020 13:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.47226 * 2 1 4 4 C 1.46500 * 120.00165 * 277.50630 * 3 2 1 5 5 C 1.50699 * 109.46963 * 269.99881 * 4 3 2 6 6 H 1.08000 * 120.00216 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99844 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00045 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00094 * 359.97438 * 7 5 4 10 10 H 1.48491 * 109.47260 * 90.00332 * 9 7 5 11 11 H 1.48506 * 109.46831 * 210.00282 * 9 7 5 12 12 H 1.48498 * 109.47247 * 329.99970 * 9 7 5 13 13 C 1.34778 * 119.99916 * 97.50141 * 3 2 1 14 14 O 1.21584 * 120.00304 * 185.80957 * 13 3 2 15 15 C 1.47610 * 119.99847 * 5.82283 * 13 3 2 16 16 C 1.39699 * 120.07273 * 133.81810 * 15 13 3 17 17 C 1.37786 * 120.00645 * 179.97438 * 16 15 13 18 18 C 1.38841 * 120.14859 * 0.02562 * 17 16 15 19 19 O 1.35794 * 119.93216 * 179.97438 * 18 17 16 20 20 C 1.42910 * 116.99878 * 0.02562 * 19 18 17 21 21 C 1.39406 * 120.14049 * 359.97438 * 18 17 16 22 22 O 1.36002 * 119.99951 * 179.97438 * 21 18 17 23 23 C 1.42898 * 116.99413 * 180.02562 * 22 21 18 24 24 C 1.53008 * 109.46768 * 179.97438 * 23 22 21 25 25 O 1.42898 * 109.46889 * 65.00320 * 24 23 22 26 26 C 1.38142 * 119.99248 * 0.26180 * 21 18 17 27 27 H 1.08995 * 109.46784 * 309.34986 * 1 2 3 28 28 H 1.08997 * 109.47178 * 69.35479 * 1 2 3 29 29 H 1.09000 * 109.46758 * 189.35330 * 1 2 3 30 30 H 1.09004 * 109.47291 * 239.99891 * 2 1 3 31 31 H 1.09004 * 109.47037 * 120.00484 * 2 1 3 32 32 H 1.08994 * 109.46988 * 29.99567 * 4 3 2 33 33 H 1.08998 * 109.47138 * 150.00197 * 4 3 2 34 34 H 0.97000 * 120.00202 * 179.97438 * 8 7 5 35 35 H 1.07999 * 119.99824 * 359.94705 * 16 15 13 36 36 H 1.07998 * 119.93041 * 179.97438 * 17 16 15 37 37 H 1.09000 * 109.46425 * 60.00473 * 20 19 18 38 38 H 1.09000 * 109.46871 * 180.02562 * 20 19 18 39 39 H 1.08998 * 109.47178 * 300.00329 * 20 19 18 40 40 H 1.09007 * 109.47191 * 60.00756 * 23 22 21 41 41 H 1.08998 * 109.47691 * 300.00234 * 23 22 21 42 42 H 1.09004 * 109.46831 * 184.99859 * 24 23 22 43 43 H 1.08999 * 109.46963 * 305.00508 * 24 23 22 44 44 H 0.96696 * 114.00533 * 179.97438 * 25 24 23 45 45 H 1.07999 * 120.07234 * 179.69957 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1063 2.1270 -1.2578 5 6 3.4645 1.9132 -1.8747 6 1 4.1899 1.2850 -1.3791 7 6 3.7816 2.5206 -3.0712 8 7 4.9671 2.3344 -3.6093 9 14 2.5273 3.6078 -3.9280 10 1 2.6849 5.0084 -3.4606 11 1 2.7420 3.5488 -5.3962 12 1 1.1580 3.1304 -3.6084 13 6 2.3867 1.9657 1.1572 14 8 2.6911 3.1427 1.1739 15 6 2.4207 1.1768 2.4044 16 6 3.5211 1.2675 3.2603 17 6 3.5511 0.5310 4.4244 18 6 2.4897 -0.3029 4.7496 19 8 2.5242 -1.0272 5.8977 20 6 3.6823 -0.8815 6.7222 21 6 1.3886 -0.3981 3.9000 22 8 0.3506 -1.2161 4.2211 23 6 -0.7444 -1.2649 3.3044 24 6 -1.8074 -2.2316 3.8306 25 8 -2.3554 -1.7204 5.0473 26 6 1.3545 0.3341 2.7290 27 1 -0.3633 0.6516 0.7947 28 1 -0.3633 0.3623 -0.9616 29 1 -0.3633 -1.0140 0.1670 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.3362 1.7745 -1.9438 33 1 1.9596 3.1891 -1.0615 34 1 5.1900 2.7613 -4.4513 35 1 4.3484 1.9147 3.0093 36 1 4.4026 0.6017 5.0849 37 1 3.7807 0.1596 7.0296 38 1 3.5819 -1.5134 7.6046 39 1 4.5678 -1.1798 6.1609 40 1 -0.3899 -1.6093 2.3328 41 1 -1.1769 -0.2697 3.2014 42 1 -2.6009 -2.3369 3.0907 43 1 -1.3530 -3.2046 4.0173 44 1 -3.0376 -2.2831 5.4384 45 1 0.5042 0.2576 2.0675 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280886497.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:32 Heat of formation + Delta-G solvation = -113.845231 kcal Electronic energy + Delta-G solvation = -28186.236296 eV Core-core repulsion = 24170.779252 eV Total energy + Delta-G solvation = -4015.457044 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.82412 -39.20263 -38.76248 -37.02509 -36.27069 -35.53525 -32.80422 -31.07470 -30.86611 -30.12081 -29.23249 -27.94529 -27.16599 -23.88795 -23.56659 -23.06412 -21.74822 -21.58612 -19.31051 -18.25549 -17.96890 -17.37674 -16.96558 -16.84909 -16.16173 -16.11014 -15.56136 -15.39909 -14.98831 -14.75171 -14.52991 -14.38379 -14.14765 -13.70119 -13.29217 -13.22074 -12.92761 -12.68394 -12.45876 -12.35947 -12.20956 -11.96049 -11.87516 -11.56297 -11.31401 -11.27636 -11.16085 -11.03380 -10.88198 -10.73763 -10.51092 -10.38136 -10.17076 -9.56484 -9.16660 -8.69544 -8.59980 -7.88808 -7.70909 -6.09962 -4.09058 1.08808 1.36457 3.01227 3.14862 3.24064 3.28316 3.34244 3.36465 3.65898 3.87289 3.95612 4.38529 4.57078 4.73511 4.80144 4.81385 4.84044 5.00152 5.02224 5.07866 5.16881 5.22286 5.23346 5.25021 5.31362 5.35595 5.41149 5.43559 5.58564 5.61245 5.85494 5.99582 6.10435 6.22299 6.33477 6.45635 6.55724 6.71754 6.94278 6.94730 7.29210 7.30860 7.49338 7.59181 8.19141 8.45144 8.87740 8.95070 9.50082 11.03322 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.014772 B = 0.003654 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.069215 B = 7660.734545 C = 9045.845801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.094 3.906 3 N -0.584 5.584 4 C 0.215 3.785 5 C -0.531 4.531 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.897 5.897 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.554 3.446 14 O -0.534 6.534 15 C -0.111 4.111 16 C -0.063 4.063 17 C -0.179 4.179 18 C 0.111 3.889 19 O -0.305 6.305 20 C 0.025 3.975 21 C 0.093 3.907 22 O -0.295 6.295 23 C 0.053 3.947 24 C 0.080 3.920 25 O -0.565 6.565 26 C -0.160 4.160 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.031 0.969 33 H 0.039 0.961 34 H 0.265 0.735 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.055 0.945 38 H 0.098 0.902 39 H 0.056 0.944 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.058 0.942 44 H 0.379 0.621 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.471 -12.046 17.519 24.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.029 4.029 3 N -0.315 5.315 4 C 0.095 3.905 5 C -0.569 4.569 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.535 5.535 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.341 3.659 14 O -0.412 6.412 15 C -0.115 4.115 16 C -0.082 4.082 17 C -0.197 4.197 18 C 0.066 3.934 19 O -0.218 6.218 20 C -0.070 4.070 21 C 0.048 3.952 22 O -0.209 6.209 23 C -0.023 4.023 24 C 0.002 3.998 25 O -0.371 6.371 26 C -0.178 4.178 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.155 0.845 36 H 0.157 0.843 37 H 0.074 0.926 38 H 0.117 0.883 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.076 0.924 44 H 0.226 0.774 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -10.940 -11.148 17.445 23.415 hybrid contribution -0.642 0.258 -0.739 1.012 sum -11.582 -10.890 16.706 23.062 Atomic orbital electron populations 1.22426 0.97090 1.01333 1.02796 1.21697 0.93240 0.84255 1.03754 1.47836 1.62517 1.13341 1.07777 1.19686 0.97907 0.92728 0.80167 1.21335 0.98346 1.31065 1.06170 0.90670 1.24848 0.95256 0.95938 0.96893 1.69895 1.20311 1.44090 1.19213 0.86853 0.82144 0.81857 0.78866 1.19851 1.21057 1.19062 1.18081 0.77920 0.86860 0.83031 1.90761 1.48781 1.15704 1.85975 1.19841 0.95766 0.99010 0.96877 1.20918 0.97623 0.97526 0.92175 1.20988 0.98688 1.00275 0.99788 1.18394 0.93252 0.94631 0.87165 1.86127 1.42067 1.62963 1.30648 1.23082 0.87340 1.02327 0.94246 1.18002 0.88128 0.95481 0.93626 1.86204 1.26496 1.60963 1.47259 1.22955 0.85985 1.00831 0.92485 1.22186 0.94243 0.96276 0.87106 1.86588 1.59039 1.51691 1.39740 1.21771 1.01233 0.98217 0.96619 0.92528 0.91426 0.91785 0.89673 0.90336 0.95072 0.94316 0.92535 0.84530 0.84295 0.92601 0.88328 0.92562 0.90351 0.91271 0.91396 0.92354 0.77368 0.83051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.20 9.04 37.16 0.34 -1.86 16 2 C 0.09 1.51 5.59 -4.04 -0.02 1.49 16 3 N -0.58 -12.25 2.46 -176.26 -0.43 -12.68 16 4 C 0.22 5.28 4.29 -5.19 -0.02 5.25 16 5 C -0.53 -15.23 9.94 -34.44 -0.34 -15.57 16 6 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 7 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 8 N -0.90 -27.58 13.96 55.43 0.77 -26.80 16 9 Si 0.88 21.51 27.47 -169.99 -4.67 16.84 16 10 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 13 C 0.55 11.97 7.25 -12.44 -0.09 11.88 16 14 O -0.53 -13.64 16.55 5.29 0.09 -13.55 16 15 C -0.11 -1.95 5.07 -104.97 -0.53 -2.48 16 16 C -0.06 -1.01 9.68 -39.20 -0.38 -1.39 16 17 C -0.18 -2.37 9.01 -39.52 -0.36 -2.73 16 18 C 0.11 1.58 6.71 -38.92 -0.26 1.32 16 19 O -0.30 -3.98 10.27 -33.76 -0.35 -4.33 16 20 C 0.03 0.21 9.81 101.05 0.99 1.20 16 21 C 0.09 1.36 6.69 -39.18 -0.26 1.10 16 22 O -0.30 -4.08 9.88 -40.83 -0.40 -4.48 16 23 C 0.05 0.54 5.12 37.16 0.19 0.73 16 24 C 0.08 0.62 7.43 37.16 0.28 0.90 16 25 O -0.57 -5.27 13.62 -40.09 -0.55 -5.81 16 26 C -0.16 -2.37 6.40 -39.06 -0.25 -2.62 16 27 H 0.06 0.69 6.31 -51.93 -0.33 0.36 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.57 7.58 -51.93 -0.39 0.18 16 30 H 0.08 1.41 8.13 -51.93 -0.42 0.98 16 31 H 0.08 1.15 5.11 -51.93 -0.27 0.89 16 32 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 33 H 0.04 1.02 6.78 -51.93 -0.35 0.66 16 34 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 35 H 0.14 2.18 8.06 -52.49 -0.42 1.76 16 36 H 0.14 1.41 6.27 -52.49 -0.33 1.08 16 37 H 0.06 0.41 7.65 -51.93 -0.40 0.02 16 38 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.41 7.65 -51.93 -0.40 0.01 16 40 H 0.08 0.65 6.97 -51.92 -0.36 0.29 16 41 H 0.07 0.72 7.67 -51.93 -0.40 0.32 16 42 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.38 1.58 9.12 45.56 0.42 1.99 16 45 H 0.15 2.00 1.93 -52.49 -0.10 1.90 16 LS Contribution 367.76 15.07 5.54 5.54 Total: -1.00 -37.83 367.76 -6.22 -44.06 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -5.40 Total: 1.99 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -0.82 Total: -0.77 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: 0.34 Total: -39.49 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: -1.21 Total: -28.17 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -37.83 -6.22 -44.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280886497.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.788 kcal (2) G-P(sol) polarization free energy of solvation -37.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds