Wall clock time and date at job start Tue Mar 31 2020 13:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.47226 * 2 1 4 4 C 1.46500 * 120.00165 * 277.50630 * 3 2 1 5 5 C 1.50699 * 109.46963 * 269.99881 * 4 3 2 6 6 H 1.08000 * 120.00216 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99844 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00045 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00094 * 359.97438 * 7 5 4 10 10 H 1.48491 * 109.47260 * 90.00332 * 9 7 5 11 11 H 1.48506 * 109.46831 * 210.00282 * 9 7 5 12 12 H 1.48498 * 109.47247 * 329.99970 * 9 7 5 13 13 C 1.34778 * 119.99916 * 97.50141 * 3 2 1 14 14 O 1.21584 * 120.00304 * 185.80957 * 13 3 2 15 15 C 1.47610 * 119.99847 * 5.82283 * 13 3 2 16 16 C 1.39699 * 120.07273 * 133.81810 * 15 13 3 17 17 C 1.37786 * 120.00645 * 179.97438 * 16 15 13 18 18 C 1.38841 * 120.14859 * 0.02562 * 17 16 15 19 19 O 1.35794 * 119.93216 * 179.97438 * 18 17 16 20 20 C 1.42910 * 116.99878 * 0.02562 * 19 18 17 21 21 C 1.39406 * 120.14049 * 359.97438 * 18 17 16 22 22 O 1.36002 * 119.99951 * 179.97438 * 21 18 17 23 23 C 1.42898 * 116.99413 * 180.02562 * 22 21 18 24 24 C 1.53008 * 109.46768 * 179.97438 * 23 22 21 25 25 O 1.42898 * 109.46889 * 65.00320 * 24 23 22 26 26 C 1.38142 * 119.99248 * 0.26180 * 21 18 17 27 27 H 1.08995 * 109.46784 * 309.34986 * 1 2 3 28 28 H 1.08997 * 109.47178 * 69.35479 * 1 2 3 29 29 H 1.09000 * 109.46758 * 189.35330 * 1 2 3 30 30 H 1.09004 * 109.47291 * 239.99891 * 2 1 3 31 31 H 1.09004 * 109.47037 * 120.00484 * 2 1 3 32 32 H 1.08994 * 109.46988 * 29.99567 * 4 3 2 33 33 H 1.08998 * 109.47138 * 150.00197 * 4 3 2 34 34 H 0.97000 * 120.00202 * 179.97438 * 8 7 5 35 35 H 1.07999 * 119.99824 * 359.94705 * 16 15 13 36 36 H 1.07998 * 119.93041 * 179.97438 * 17 16 15 37 37 H 1.09000 * 109.46425 * 60.00473 * 20 19 18 38 38 H 1.09000 * 109.46871 * 180.02562 * 20 19 18 39 39 H 1.08998 * 109.47178 * 300.00329 * 20 19 18 40 40 H 1.09007 * 109.47191 * 60.00756 * 23 22 21 41 41 H 1.08998 * 109.47691 * 300.00234 * 23 22 21 42 42 H 1.09004 * 109.46831 * 184.99859 * 24 23 22 43 43 H 1.08999 * 109.46963 * 305.00508 * 24 23 22 44 44 H 0.96696 * 114.00533 * 179.97438 * 25 24 23 45 45 H 1.07999 * 120.07234 * 179.69957 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1063 2.1270 -1.2578 5 6 3.4645 1.9132 -1.8747 6 1 4.1899 1.2850 -1.3791 7 6 3.7816 2.5206 -3.0712 8 7 4.9671 2.3344 -3.6093 9 14 2.5273 3.6078 -3.9280 10 1 2.6849 5.0084 -3.4606 11 1 2.7420 3.5488 -5.3962 12 1 1.1580 3.1304 -3.6084 13 6 2.3867 1.9657 1.1572 14 8 2.6911 3.1427 1.1739 15 6 2.4207 1.1768 2.4044 16 6 3.5211 1.2675 3.2603 17 6 3.5511 0.5310 4.4244 18 6 2.4897 -0.3029 4.7496 19 8 2.5242 -1.0272 5.8977 20 6 3.6823 -0.8815 6.7222 21 6 1.3886 -0.3981 3.9000 22 8 0.3506 -1.2161 4.2211 23 6 -0.7444 -1.2649 3.3044 24 6 -1.8074 -2.2316 3.8306 25 8 -2.3554 -1.7204 5.0473 26 6 1.3545 0.3341 2.7290 27 1 -0.3633 0.6516 0.7947 28 1 -0.3633 0.3623 -0.9616 29 1 -0.3633 -1.0140 0.1670 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.3362 1.7745 -1.9438 33 1 1.9596 3.1891 -1.0615 34 1 5.1900 2.7613 -4.4513 35 1 4.3484 1.9147 3.0093 36 1 4.4026 0.6017 5.0849 37 1 3.7807 0.1596 7.0296 38 1 3.5819 -1.5134 7.6046 39 1 4.5678 -1.1798 6.1609 40 1 -0.3899 -1.6093 2.3328 41 1 -1.1769 -0.2697 3.2014 42 1 -2.6009 -2.3369 3.0907 43 1 -1.3530 -3.2046 4.0173 44 1 -3.0376 -2.2831 5.4384 45 1 0.5042 0.2576 2.0675 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280886497.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:31 Heat of formation + Delta-G solvation = -142.928041 kcal Electronic energy + Delta-G solvation = -28187.497422 eV Core-core repulsion = 24170.779252 eV Total energy + Delta-G solvation = -4016.718170 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.98325 -40.65400 -39.68205 -37.90067 -37.25662 -37.15129 -34.90161 -32.50867 -31.85988 -31.34403 -30.24508 -29.51779 -28.16773 -25.29003 -24.62102 -24.45156 -23.25219 -22.48307 -20.65925 -19.42696 -19.11773 -18.63038 -18.55952 -18.06604 -17.39808 -17.18794 -16.93893 -16.30526 -16.21426 -16.07694 -15.87505 -15.60346 -15.19135 -14.95771 -14.57228 -14.43221 -14.31174 -14.01576 -13.69697 -13.59714 -13.44437 -13.35145 -13.16871 -12.91172 -12.55718 -12.43859 -12.27194 -12.16155 -12.10955 -11.99236 -11.93591 -11.85664 -11.75351 -10.94493 -10.86340 -10.83589 -9.82446 -9.53758 -8.92084 -8.35130 -6.40951 -0.11529 0.21609 1.32257 1.37009 1.45046 1.69573 2.11482 2.17961 2.26701 2.30393 2.62641 2.98965 3.34421 3.44357 3.68832 3.86093 3.98581 4.03190 4.10794 4.17573 4.19578 4.28032 4.40340 4.43295 4.43426 4.46694 4.55405 4.63404 4.74119 4.76728 4.76813 4.80619 4.88470 4.91992 4.94422 5.06161 5.26997 5.32546 5.42577 5.44671 5.58272 6.02638 6.21563 6.49711 6.57052 6.60479 6.95147 7.15329 7.29322 8.81786 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.014772 B = 0.003654 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.069215 B = 7660.734545 C = 9045.845801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.087 3.913 3 N -0.589 5.589 4 C 0.225 3.775 5 C -0.540 4.540 6 H 0.028 0.972 7 C 0.013 3.987 8 N -0.944 5.944 9 Si 0.947 3.053 10 H -0.277 1.277 11 H -0.273 1.273 12 H -0.236 1.236 13 C 0.547 3.453 14 O -0.589 6.589 15 C -0.136 4.136 16 C -0.077 4.077 17 C -0.167 4.167 18 C 0.114 3.886 19 O -0.318 6.318 20 C 0.013 3.987 21 C 0.089 3.911 22 O -0.307 6.307 23 C 0.037 3.963 24 C 0.080 3.920 25 O -0.595 6.595 26 C -0.150 4.150 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.107 0.893 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.056 0.944 33 H 0.021 0.979 34 H 0.269 0.731 35 H 0.125 0.875 36 H 0.171 0.829 37 H 0.067 0.933 38 H 0.122 0.878 39 H 0.068 0.932 40 H 0.099 0.901 41 H 0.065 0.935 42 H 0.101 0.899 43 H 0.065 0.935 44 H 0.399 0.601 45 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.061 -13.655 18.537 26.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.035 4.035 3 N -0.318 5.318 4 C 0.103 3.897 5 C -0.578 4.578 6 H 0.046 0.954 7 C -0.185 4.185 8 N -0.584 5.584 9 Si 0.770 3.230 10 H -0.202 1.202 11 H -0.198 1.198 12 H -0.159 1.159 13 C 0.337 3.663 14 O -0.471 6.471 15 C -0.140 4.140 16 C -0.096 4.096 17 C -0.186 4.186 18 C 0.067 3.933 19 O -0.232 6.232 20 C -0.081 4.081 21 C 0.043 3.957 22 O -0.222 6.222 23 C -0.038 4.038 24 C 0.002 3.998 25 O -0.404 6.404 26 C -0.169 4.169 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.125 0.875 30 H 0.095 0.905 31 H 0.110 0.890 32 H 0.073 0.927 33 H 0.039 0.961 34 H 0.078 0.922 35 H 0.143 0.857 36 H 0.189 0.811 37 H 0.085 0.915 38 H 0.140 0.860 39 H 0.087 0.913 40 H 0.117 0.883 41 H 0.083 0.917 42 H 0.119 0.881 43 H 0.083 0.917 44 H 0.249 0.751 45 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -13.569 -12.832 18.491 26.281 hybrid contribution 0.240 0.613 -0.887 1.104 sum -13.329 -12.219 17.605 25.237 Atomic orbital electron populations 1.22390 0.93594 1.04152 1.02812 1.22023 0.96061 0.81451 1.04005 1.47938 1.62363 1.15031 1.06508 1.19371 0.95932 0.92462 0.81957 1.21543 0.99563 1.30370 1.06373 0.95351 1.25837 0.97551 0.97408 0.97697 1.70046 1.22723 1.45579 1.20018 0.85723 0.80545 0.78982 0.77779 1.20242 1.19834 1.15898 1.18759 0.76597 0.86600 0.84389 1.90706 1.51219 1.18119 1.87049 1.19566 0.97883 1.00731 0.95784 1.20956 0.97184 0.98277 0.93210 1.21177 0.99530 0.98961 0.98901 1.18606 0.93053 0.94138 0.87497 1.86125 1.44203 1.62553 1.30304 1.23453 0.86339 1.03807 0.94514 1.18129 0.88741 0.95376 0.93408 1.86215 1.26913 1.60453 1.48571 1.23378 0.85601 1.01583 0.93220 1.22322 0.94450 0.95518 0.87481 1.86525 1.60092 1.53123 1.40637 1.21751 1.00656 0.97373 0.97097 0.92267 0.91715 0.87465 0.90544 0.89035 0.92657 0.96124 0.92181 0.85694 0.81134 0.91468 0.85982 0.91334 0.88304 0.91720 0.88135 0.91686 0.75076 0.81569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.75 9.04 71.98 0.65 -3.10 16 2 C 0.09 2.70 5.59 86.38 0.48 3.18 16 3 N -0.59 -25.17 2.46 -829.84 -2.04 -27.21 16 4 C 0.22 11.15 4.29 85.63 0.37 11.52 16 5 C -0.54 -32.23 9.94 25.60 0.25 -31.98 16 6 H 0.03 1.90 8.06 -2.91 -0.02 1.87 16 7 C 0.01 0.79 5.47 84.65 0.46 1.25 16 8 N -0.94 -59.94 13.96 21.45 0.30 -59.64 16 9 Si 0.95 44.51 27.47 68.60 1.88 46.40 16 10 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 11 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 12 H -0.24 -9.87 6.54 99.48 0.65 -9.22 16 13 C 0.55 24.58 7.25 86.72 0.63 25.21 16 14 O -0.59 -31.75 16.55 -3.98 -0.07 -31.82 16 15 C -0.14 -4.86 5.07 -20.09 -0.10 -4.97 16 16 C -0.08 -2.51 9.68 22.52 0.22 -2.29 16 17 C -0.17 -4.25 9.01 22.31 0.20 -4.05 16 18 C 0.11 3.03 6.71 22.70 0.15 3.18 16 19 O -0.32 -7.58 10.27 -77.22 -0.79 -8.38 16 20 C 0.01 0.18 9.81 113.37 1.11 1.29 16 21 C 0.09 2.47 6.69 22.53 0.15 2.62 16 22 O -0.31 -7.85 9.88 -73.42 -0.73 -8.57 16 23 C 0.04 0.65 5.12 71.98 0.37 1.02 16 24 C 0.08 0.98 7.43 71.98 0.53 1.52 16 25 O -0.59 -9.67 13.62 -144.34 -1.97 -11.64 16 26 C -0.15 -4.32 6.40 22.61 0.14 -4.17 16 27 H 0.06 1.29 6.31 -2.39 -0.02 1.27 16 28 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.11 1.42 7.58 -2.39 -0.02 1.40 16 30 H 0.08 2.50 8.13 -2.39 -0.02 2.48 16 31 H 0.09 2.61 5.11 -2.38 -0.01 2.60 16 32 H 0.06 2.47 7.13 -2.39 -0.02 2.46 16 33 H 0.02 1.10 6.78 -2.39 -0.02 1.09 16 34 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 35 H 0.13 4.25 8.06 -2.91 -0.02 4.23 16 36 H 0.17 3.09 6.27 -2.91 -0.02 3.07 16 37 H 0.07 0.80 7.65 -2.39 -0.02 0.78 16 38 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.07 0.80 7.65 -2.39 -0.02 0.78 16 40 H 0.10 1.28 6.97 -2.38 -0.02 1.26 16 41 H 0.06 1.19 7.67 -2.39 -0.02 1.18 16 42 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.40 2.38 9.12 -74.06 -0.68 1.71 16 45 H 0.17 4.10 1.93 -2.91 -0.01 4.10 16 Total: -1.00 -87.18 367.76 2.52 -84.66 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 0.30 Total: 15.95 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: 5.63 Total: 0.25 kcal Atomic # 7 Polarization: -85.11 SS G_CDS: -1.74 Total: -86.85 kcal Atomic # 8 Polarization: -56.85 SS G_CDS: -3.55 Total: -60.40 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.88 Total: 46.40 kcal Total: -87.18 2.52 -84.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280886497.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.271 kcal (2) G-P(sol) polarization free energy of solvation -87.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds