Wall clock time and date at job start Tue Mar 31 2020 13:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46893 * 111.00488 * 2 1 4 4 C 1.46896 * 110.99989 * 123.96161 * 2 1 3 5 5 C 1.52992 * 109.47697 * 66.03920 * 4 2 1 6 6 C 1.53002 * 109.47496 * 180.02562 * 5 4 2 7 7 N 1.46502 * 109.47322 * 179.97438 * 6 5 4 8 8 C 1.46490 * 120.00481 * 270.00592 * 7 6 5 9 9 C 1.50700 * 109.47267 * 269.99738 * 8 7 6 10 10 H 1.08009 * 119.99523 * 0.02562 * 9 8 7 11 11 C 1.37873 * 120.00465 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99866 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00173 * 180.02562 * 11 9 8 14 14 H 1.48507 * 109.47018 * 0.02562 * 13 11 9 15 15 H 1.48493 * 109.47144 * 120.00245 * 13 11 9 16 16 H 1.48502 * 109.47056 * 240.00139 * 13 11 9 17 17 C 1.34784 * 119.99435 * 90.00408 * 7 6 5 18 18 O 1.21780 * 119.99675 * 359.97438 * 17 7 6 19 19 C 1.41539 * 119.99886 * 180.02562 * 17 7 6 20 20 C 1.35565 * 119.99909 * 179.97438 * 19 17 7 21 21 C 1.41722 * 119.99725 * 180.02562 * 20 19 17 22 22 C 1.37077 * 126.18950 * 179.71718 * 21 20 19 23 23 N 1.30948 * 113.84514 * 179.84682 * 22 21 20 24 24 C 1.29361 * 117.49783 * 0.45909 * 23 22 21 25 25 S 1.70914 * 110.64688 * 359.73896 * 24 23 22 26 26 H 1.09005 * 109.46679 * 296.04733 * 1 2 3 27 27 H 1.09004 * 109.47020 * 56.03768 * 1 2 3 28 28 H 1.08997 * 109.47424 * 176.04493 * 1 2 3 29 29 H 1.09001 * 109.47524 * 183.95876 * 3 2 1 30 30 H 1.09005 * 109.47348 * 303.95820 * 3 2 1 31 31 H 1.09002 * 109.47182 * 63.95304 * 3 2 1 32 32 H 1.09003 * 109.46787 * 306.03794 * 4 2 1 33 33 H 1.08997 * 109.47377 * 186.04338 * 4 2 1 34 34 H 1.09003 * 109.47105 * 60.00069 * 5 4 2 35 35 H 1.09004 * 109.47396 * 300.00481 * 5 4 2 36 36 H 1.08999 * 109.46596 * 60.00617 * 6 5 4 37 37 H 1.08993 * 109.47021 * 300.00186 * 6 5 4 38 38 H 1.09005 * 109.47240 * 29.99677 * 8 7 6 39 39 H 1.09001 * 109.47399 * 150.00181 * 8 7 6 40 40 H 0.96996 * 119.99853 * 179.97438 * 12 11 9 41 41 H 1.07995 * 120.00035 * 0.27594 * 19 17 7 42 42 H 1.07999 * 120.00027 * 0.02562 * 20 19 17 43 43 H 1.08000 * 123.07034 * 0.02562 * 22 21 20 44 44 H 1.08001 * 124.67687 * 179.76555 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9954 -0.7661 1.1374 5 6 1.6314 -2.2426 0.9702 6 6 2.1792 -3.0405 2.1553 7 7 1.8300 -4.4543 1.9954 8 6 0.5730 -4.9654 2.5475 9 6 0.8011 -5.4417 3.9589 10 1 1.7842 -5.3703 4.4007 11 6 -0.2451 -5.9675 4.6867 12 7 -1.4422 -6.0539 4.1490 13 14 0.0375 -6.5572 6.4365 14 1 1.4616 -6.3515 6.8042 15 1 -0.8290 -5.7872 7.3645 16 1 -0.2953 -8.0013 6.5320 17 6 2.6654 -5.2847 1.3403 18 8 3.7101 -4.8596 0.8810 19 6 2.3279 -6.6505 1.1854 20 6 3.1679 -7.4857 0.5260 21 6 2.8297 -8.8531 0.3704 22 6 3.5779 -9.8036 -0.2743 23 7 3.0359 -10.9957 -0.2714 24 6 1.8897 -11.1292 0.3133 25 16 1.3677 -9.6375 0.9641 26 1 -0.3633 0.4513 0.9233 27 1 -0.3633 0.5741 -0.8524 28 1 -0.3634 -1.0252 -0.0709 29 1 3.0829 1.3431 -0.0709 30 1 1.5899 1.9163 -0.8524 31 1 1.7045 1.8723 0.9233 32 1 1.5611 -0.3873 2.0627 33 1 3.0797 -0.6613 1.1755 34 1 2.0656 -2.6214 0.0450 35 1 0.5471 -2.3475 0.9322 36 1 1.7444 -2.6616 3.0803 37 1 3.2633 -2.9357 2.1937 38 1 -0.1732 -4.1708 2.5483 39 1 0.2189 -5.7958 1.9367 40 1 -2.1782 -6.4242 4.6609 41 1 1.3990 -7.0263 1.5881 42 1 4.0947 -7.1089 0.1194 43 1 4.5288 -9.5895 -0.7395 44 1 1.3387 -12.0557 0.3812 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282448425.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:18 Heat of formation + Delta-G solvation = 30.779308 kcal Electronic energy + Delta-G solvation = -24553.760253 eV Core-core repulsion = 21019.620221 eV Total energy + Delta-G solvation = -3534.140032 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.60774 -39.27211 -37.61515 -35.35011 -34.16220 -32.90737 -31.59989 -29.28617 -27.62826 -27.42339 -26.45840 -25.32169 -23.23766 -23.02269 -21.40725 -20.57710 -20.16903 -18.39311 -17.43088 -16.93216 -16.49730 -15.78148 -15.55740 -15.15839 -15.01625 -14.69228 -14.43487 -14.40924 -13.99964 -13.90855 -13.79071 -13.13202 -12.97838 -12.49312 -12.40806 -12.17402 -12.05336 -11.79094 -11.62257 -11.55924 -11.25925 -11.16142 -11.04312 -10.96184 -10.74021 -10.66150 -10.31394 -10.08389 -9.77235 -9.67422 -9.19536 -9.07321 -8.61458 -8.34865 -8.12458 -7.68598 -6.24005 -4.31556 0.18047 1.42057 1.83764 1.99024 2.99986 3.17578 3.26770 3.31251 3.80966 3.98332 4.15710 4.29954 4.38909 5.06662 5.09264 5.11631 5.15047 5.24318 5.27643 5.29695 5.38275 5.54811 5.57368 5.63952 5.68783 5.73504 5.77783 5.86286 5.96764 6.00418 6.15309 6.16489 6.40606 6.52107 6.56261 6.65049 6.75300 7.03387 7.06284 7.11806 7.49352 7.71214 7.71255 7.98889 8.26691 8.73654 8.94941 9.36774 10.82390 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.008883 B = 0.003895 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3151.331515 B = 7186.326494 C = 9536.561814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.549 5.549 3 C 0.025 3.975 4 C 0.059 3.941 5 C -0.128 4.128 6 C 0.122 3.878 7 N -0.586 5.586 8 C 0.235 3.765 9 C -0.538 4.538 10 H 0.062 0.938 11 C 0.067 3.933 12 N -0.890 5.890 13 Si 0.893 3.107 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.281 1.281 17 C 0.546 3.454 18 O -0.576 6.576 19 C -0.168 4.168 20 C -0.025 4.025 21 C -0.198 4.198 22 C 0.048 3.952 23 N -0.474 5.474 24 C -0.011 4.011 25 S 0.186 5.814 26 H 0.025 0.975 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.023 0.977 32 H 0.035 0.965 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.265 0.735 41 H 0.140 0.860 42 H 0.146 0.854 43 H 0.180 0.820 44 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.982 1.813 -7.010 7.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.273 5.273 3 C -0.123 4.123 4 C -0.069 4.069 5 C -0.167 4.167 6 C -0.002 4.002 7 N -0.315 5.315 8 C 0.115 3.885 9 C -0.576 4.576 10 H 0.080 0.920 11 C -0.136 4.136 12 N -0.528 5.528 13 Si 0.721 3.279 14 H -0.196 1.196 15 H -0.208 1.208 16 H -0.207 1.207 17 C 0.338 3.662 18 O -0.460 6.460 19 C -0.191 4.191 20 C -0.047 4.047 21 C -0.319 4.319 22 C -0.108 4.108 23 N -0.187 5.187 24 C -0.305 4.305 25 S 0.442 5.558 26 H 0.043 0.957 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.041 0.959 32 H 0.053 0.947 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.075 0.925 41 H 0.157 0.843 42 H 0.163 0.837 43 H 0.197 0.803 44 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 2.725 1.500 -7.284 7.920 hybrid contribution 0.308 0.165 1.534 1.573 sum 3.033 1.665 -5.750 6.711 Atomic orbital electron populations 1.22442 0.87397 1.02778 1.00099 1.61966 1.08114 1.13411 1.43770 1.22364 1.00726 0.89060 1.00175 1.22074 1.00070 0.93900 0.90885 1.21940 1.01529 0.93252 1.00008 1.21207 1.00574 0.81015 0.97425 1.48135 1.22416 1.08108 1.52807 1.19498 0.79746 0.95373 0.93849 1.21542 0.96126 1.41665 0.98290 0.91987 1.24918 0.94869 0.95398 0.98457 1.69926 1.00485 1.44998 1.37394 0.86504 0.78532 0.78604 0.84288 1.19621 1.20824 1.20687 1.16876 0.83682 0.86724 0.78956 1.90734 1.25276 1.78632 1.51382 1.22580 1.01515 0.94783 1.00251 1.20466 0.99649 0.88459 0.96146 1.24107 0.99745 0.99789 1.08284 1.22557 1.01455 0.86089 1.00745 1.66020 1.09676 1.24431 1.18597 1.28519 0.96670 1.03579 1.01711 1.84602 1.19122 1.02122 1.49914 0.95656 0.91769 0.90736 0.91444 0.91636 0.95850 0.94688 0.90739 0.91012 0.91719 0.90538 0.90857 0.94430 0.94392 0.92518 0.84257 0.83688 0.80319 0.78680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.32 60.06 0.56 0.81 16 2 N -0.55 -7.09 5.02 -251.27 -1.26 -8.35 16 3 C 0.03 0.26 9.57 60.06 0.57 0.84 16 4 C 0.06 0.80 4.96 -3.83 -0.02 0.78 16 5 C -0.13 -2.04 5.46 -26.73 -0.15 -2.18 16 6 C 0.12 2.19 5.41 -4.04 -0.02 2.17 16 7 N -0.59 -12.11 2.46 -178.50 -0.44 -12.55 16 8 C 0.24 5.39 4.85 -5.20 -0.03 5.37 16 9 C -0.54 -13.57 9.39 -34.44 -0.32 -13.89 16 10 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 11 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 12 N -0.89 -23.60 13.29 55.43 0.74 -22.86 16 13 Si 0.89 20.07 29.54 -169.99 -5.02 15.05 16 14 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 15 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 17 C 0.55 11.35 7.44 -15.00 -0.11 11.24 16 18 O -0.58 -12.72 15.69 5.12 0.08 -12.64 16 19 C -0.17 -3.16 8.59 -39.28 -0.34 -3.50 16 20 C -0.02 -0.40 9.39 -39.21 -0.37 -0.77 16 21 C -0.20 -2.92 6.26 -38.67 -0.24 -3.16 16 22 C 0.05 0.65 11.38 -18.35 -0.21 0.44 16 23 N -0.47 -6.59 10.50 -15.06 -0.16 -6.75 16 24 C -0.01 -0.14 12.20 51.72 0.63 0.49 16 25 S 0.19 2.59 21.97 -107.50 -2.36 0.23 16 26 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 28 H 0.07 0.94 6.47 -51.93 -0.34 0.60 16 29 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 30 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 31 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 33 H 0.07 0.97 8.06 -51.93 -0.42 0.55 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.06 1.05 6.55 -51.93 -0.34 0.71 16 36 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 37 H 0.07 1.33 7.42 -51.93 -0.39 0.94 16 38 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 39 H 0.04 0.90 6.08 -51.93 -0.32 0.58 16 40 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 41 H 0.14 2.75 5.12 -52.49 -0.27 2.48 16 42 H 0.15 2.24 7.46 -52.49 -0.39 1.85 16 43 H 0.18 1.95 8.06 -52.49 -0.42 1.52 16 44 H 0.20 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 381.91 15.07 5.76 5.76 Total: -1.00 -29.27 381.91 -9.44 -38.71 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -6.64 Total: 3.18 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -0.13 Total: 0.24 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: -1.12 Total: -50.51 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: 0.08 Total: -12.64 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Atomic # 16 Polarization: 2.59 SS G_CDS: -2.36 Total: 0.23 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.27 -9.44 -38.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282448425.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.488 kcal (2) G-P(sol) polarization free energy of solvation -29.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds