Wall clock time and date at job start Tue Mar 31 2020 13:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47376 * 2 1 4 4 C 1.46497 * 120.00115 * 274.64007 * 3 2 1 5 5 C 1.52996 * 109.46887 * 269.99910 * 4 3 2 6 6 O 1.42891 * 109.47657 * 64.99901 * 5 4 3 7 7 C 1.42899 * 114.00839 * 180.02562 * 6 5 4 8 8 C 1.52992 * 109.47838 * 179.97438 * 7 6 5 9 9 O 1.42911 * 109.46976 * 64.99885 * 8 7 6 10 10 C 1.34782 * 119.99911 * 94.63345 * 3 2 1 11 11 O 1.21588 * 120.00052 * 355.70293 * 10 3 2 12 12 C 1.47537 * 119.99628 * 175.69941 * 10 3 2 13 13 C 1.39660 * 120.20068 * 58.51859 * 12 10 3 14 14 C 1.37823 * 119.92184 * 179.97438 * 13 12 10 15 15 C 1.38573 * 120.32307 * 0.02562 * 14 13 12 16 16 C 1.38030 * 120.40126 * 0.02562 * 15 14 13 17 17 C 1.38829 * 120.07117 * 359.95433 * 16 15 14 18 18 O 1.35522 * 120.16247 * 180.02562 * 17 16 15 19 19 C 1.34819 * 116.99801 * 354.21779 * 18 17 16 20 20 H 1.08002 * 120.00157 * 5.13829 * 19 18 17 21 21 C 1.38698 * 119.99847 * 185.13845 * 19 18 17 22 22 N 1.31516 * 120.00243 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99709 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47487 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47151 * 120.00138 * 23 21 19 26 26 H 1.48505 * 109.46981 * 239.99641 * 23 21 19 27 27 H 1.08999 * 109.47031 * 60.00053 * 1 2 3 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47407 * 300.00235 * 1 2 3 30 30 H 1.08998 * 109.47407 * 239.99765 * 2 1 3 31 31 H 1.08999 * 109.47031 * 119.99947 * 2 1 3 32 32 H 1.09001 * 109.47135 * 29.99386 * 4 3 2 33 33 H 1.09002 * 109.47541 * 149.99890 * 4 3 2 34 34 H 1.09001 * 109.47132 * 184.99995 * 5 4 3 35 35 H 1.09003 * 109.47398 * 304.99243 * 5 4 3 36 36 H 1.09009 * 109.46913 * 300.00005 * 7 6 5 37 37 H 1.09000 * 109.46973 * 59.99133 * 7 6 5 38 38 H 1.09000 * 109.47612 * 184.99358 * 8 7 6 39 39 H 1.08999 * 109.46960 * 305.00161 * 8 7 6 40 40 H 0.96698 * 113.99515 * 180.02562 * 9 8 7 41 41 H 1.07995 * 120.03797 * 0.27766 * 13 12 10 42 42 H 1.07999 * 119.84020 * 180.02562 * 14 13 12 43 43 H 1.07998 * 119.80042 * 179.97438 * 15 14 13 44 44 H 1.07997 * 119.96165 * 179.97438 * 16 15 14 45 45 H 0.96992 * 119.99972 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1658 2.1060 -1.2645 5 6 3.5727 1.8790 -1.8214 6 8 3.7360 0.4993 -2.1552 7 6 5.0231 0.1781 -2.6866 8 6 5.0846 -1.3169 -3.0058 9 8 4.1580 -1.6194 -4.0508 10 6 2.3319 1.9851 1.1634 11 8 2.1361 1.4122 2.2179 12 6 2.9129 3.3412 1.1574 13 6 2.2183 4.4005 0.5693 14 6 2.7662 5.6651 0.5674 15 6 4.0046 5.8919 1.1462 16 6 4.7032 4.8546 1.7303 17 6 4.1666 3.5742 1.7419 18 8 4.8507 2.5544 2.3153 19 6 6.0981 2.8226 2.7507 20 1 6.4785 3.8327 2.7109 21 6 6.8930 1.8014 3.2497 22 7 6.4297 0.5716 3.2986 23 14 8.6211 2.1732 3.8536 24 1 8.9006 3.6227 3.6928 25 1 8.7349 1.8027 5.2872 26 1 9.6019 1.3894 3.0605 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.4287 1.7418 -1.9802 33 1 2.0104 3.1712 -1.0931 34 1 3.7125 2.4879 -2.7145 35 1 4.3106 2.1609 -1.0703 36 1 5.1935 0.7518 -3.5977 37 1 5.7908 0.4247 -1.9532 38 1 6.0927 -1.5787 -3.3272 39 1 4.8271 -1.8895 -2.1148 40 1 4.1429 -2.5522 -4.3052 41 1 1.2508 4.2298 0.1208 42 1 2.2277 6.4834 0.1125 43 1 4.4262 6.8862 1.1396 44 1 5.6680 5.0393 2.1790 45 1 6.9854 -0.1425 3.6480 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282553149.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:00 Heat of formation + Delta-G solvation = -122.818584 kcal Electronic energy + Delta-G solvation = -28716.008486 eV Core-core repulsion = 24700.162328 eV Total energy + Delta-G solvation = -4015.846158 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.90259 -38.48120 -37.87143 -36.42722 -36.38863 -35.05669 -32.38681 -31.86618 -30.36433 -29.44231 -28.98698 -27.85376 -25.46928 -23.82088 -23.01364 -22.39363 -21.80816 -21.33106 -18.93192 -18.10128 -17.69322 -17.21181 -16.70771 -16.25057 -15.93881 -15.28708 -14.95020 -14.75638 -14.53611 -14.21883 -14.17578 -13.93559 -13.69053 -13.57075 -13.30485 -12.95679 -12.87829 -12.61880 -12.36555 -11.88713 -11.78728 -11.70577 -11.57125 -11.37060 -11.34530 -11.10166 -10.96732 -10.88394 -10.74659 -10.53527 -10.47934 -10.09603 -9.62725 -9.39056 -8.96271 -8.92276 -8.30307 -8.07330 -7.35680 -6.50097 -4.10421 1.82005 2.25593 3.07755 3.08657 3.14666 3.42018 3.60507 3.85249 3.89394 4.22627 4.46312 5.01518 5.08402 5.09943 5.11714 5.20146 5.29536 5.34324 5.48390 5.50997 5.52653 5.56707 5.65959 5.69603 5.71558 5.74844 5.82528 5.85920 5.97918 6.08076 6.13343 6.16724 6.34595 6.52873 6.54120 6.64091 6.92454 7.00783 7.10995 7.22474 7.27019 7.36840 7.56315 7.64777 7.88867 8.01837 8.91784 8.96728 9.61135 10.65545 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.008675 B = 0.005319 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3226.898981 B = 5263.334622 C = 6689.770494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.115 3.885 3 N -0.607 5.607 4 C 0.111 3.889 5 C 0.044 3.956 6 O -0.374 6.374 7 C 0.063 3.937 8 C 0.079 3.921 9 O -0.568 6.568 10 C 0.578 3.422 11 O -0.522 6.522 12 C -0.212 4.212 13 C -0.050 4.050 14 C -0.220 4.220 15 C -0.058 4.058 16 C -0.233 4.233 17 C 0.186 3.814 18 O -0.152 6.152 19 C -0.399 4.399 20 H 0.094 0.906 21 C 0.043 3.957 22 N -0.845 5.845 23 Si 0.941 3.059 24 H -0.266 1.266 25 H -0.274 1.274 26 H -0.275 1.275 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.102 0.898 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.375 0.625 41 H 0.117 0.883 42 H 0.111 0.889 43 H 0.110 0.890 44 H 0.131 0.869 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.128 1.149 -13.107 13.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.007 4.007 3 N -0.341 5.341 4 C -0.012 4.012 5 C -0.034 4.034 6 O -0.294 6.294 7 C -0.014 4.014 8 C 0.001 3.999 9 O -0.372 6.372 10 C 0.368 3.632 11 O -0.397 6.397 12 C -0.216 4.216 13 C -0.069 4.069 14 C -0.239 4.239 15 C -0.076 4.076 16 C -0.252 4.252 17 C 0.128 3.872 18 O -0.053 6.053 19 C -0.475 4.475 20 H 0.112 0.888 21 C -0.163 4.163 22 N -0.478 5.478 23 Si 0.765 3.235 24 H -0.190 1.190 25 H -0.200 1.200 26 H -0.201 1.201 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.120 0.880 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.221 0.779 41 H 0.135 0.865 42 H 0.129 0.871 43 H 0.128 0.872 44 H 0.149 0.851 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.454 0.828 -12.300 13.107 hybrid contribution 1.392 -0.090 0.209 1.411 sum -3.062 0.738 -12.091 12.494 Atomic orbital electron populations 1.22128 0.96861 1.01515 1.01692 1.21339 0.93157 0.82711 1.03509 1.47737 1.66730 1.13959 1.05695 1.21767 0.95370 0.98427 0.85684 1.23040 0.98861 0.82789 0.98737 1.87897 1.32289 1.25707 1.83461 1.22480 0.86750 0.94579 0.97612 1.22205 0.91932 0.95407 0.90359 1.86552 1.63556 1.31017 1.56123 1.18177 0.76429 0.85578 0.83061 1.90758 1.52271 1.65919 1.30778 1.18787 0.97347 0.93861 1.11627 1.20664 0.97785 0.92083 0.96331 1.20477 0.98018 0.96383 1.09037 1.20875 0.94062 0.97653 0.95026 1.21137 1.03020 0.92526 1.08554 1.19181 0.90421 0.88288 0.89279 1.84017 1.26879 1.31793 1.62576 1.21442 0.87473 0.96140 1.42396 0.88825 1.25346 0.99836 0.94442 0.96696 1.70083 1.36791 0.99892 1.40993 0.85658 0.80202 0.78899 0.78733 1.18981 1.19980 1.20096 0.93056 0.92174 0.92558 0.90123 0.90107 0.90181 0.87991 0.92992 0.92238 0.93093 0.91630 0.92419 0.92520 0.77873 0.86550 0.87120 0.87165 0.85093 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 10.24 37.16 0.38 -1.90 16 2 C 0.12 1.96 6.00 -4.04 -0.02 1.94 16 3 N -0.61 -11.13 2.44 -174.92 -0.43 -11.55 16 4 C 0.11 1.64 5.59 -4.05 -0.02 1.61 16 5 C 0.04 0.68 6.28 37.16 0.23 0.91 16 6 O -0.37 -6.13 9.06 -40.07 -0.36 -6.49 16 7 C 0.06 0.89 6.32 37.15 0.23 1.12 16 8 C 0.08 0.95 7.43 37.15 0.28 1.22 16 9 O -0.57 -6.80 13.63 -40.07 -0.55 -7.35 16 10 C 0.58 13.12 6.74 -12.47 -0.08 13.03 16 11 O -0.52 -14.17 16.50 5.26 0.09 -14.08 16 12 C -0.21 -4.57 4.94 -104.81 -0.52 -5.09 16 13 C -0.05 -0.86 7.65 -39.20 -0.30 -1.16 16 14 C -0.22 -3.51 10.02 -39.61 -0.40 -3.91 16 15 C -0.06 -0.99 10.03 -39.53 -0.40 -1.39 16 16 C -0.23 -4.90 9.16 -39.44 -0.36 -5.26 16 17 C 0.19 4.51 6.66 -38.60 -0.26 4.25 16 18 O -0.15 -4.41 9.09 0.75 0.01 -4.40 16 19 C -0.40 -11.06 9.49 30.90 0.29 -10.77 16 20 H 0.09 2.37 5.21 -52.49 -0.27 2.10 16 21 C 0.04 1.18 5.49 -17.52 -0.10 1.09 16 22 N -0.84 -24.97 13.67 55.48 0.76 -24.22 16 23 Si 0.94 20.26 29.55 -169.99 -5.02 15.23 16 24 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 25 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 26 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.08 1.30 7.04 -51.93 -0.37 0.93 16 31 H 0.08 1.60 7.35 -51.93 -0.38 1.22 16 32 H 0.08 1.01 8.07 -51.93 -0.42 0.59 16 33 H 0.10 1.39 4.24 -51.93 -0.22 1.17 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.06 1.11 8.07 -51.93 -0.42 0.69 16 36 H 0.05 0.66 8.14 -51.92 -0.42 0.23 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.38 2.61 9.12 45.56 0.42 3.03 16 41 H 0.12 1.66 7.13 -52.49 -0.37 1.29 16 42 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 43 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 44 H 0.13 2.73 5.64 -52.49 -0.30 2.44 16 45 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 378.71 15.07 5.71 5.71 Total: -1.00 -35.79 378.71 -6.53 -42.33 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -5.70 Total: 9.11 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -1.04 Total: -4.30 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: 0.33 Total: -35.77 kcal Atomic # 8 Polarization: -31.50 SS G_CDS: -0.82 Total: -32.32 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.79 -6.53 -42.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282553149.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.489 kcal (2) G-P(sol) polarization free energy of solvation -35.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds