Wall clock time and date at job start Tue Mar 31 2020 14:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34234 * 116.99870 * 2 1 4 4 O 1.20823 * 119.99840 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99769 * 180.02562 * 3 2 1 6 6 C 1.52998 * 109.47043 * 180.02562 * 5 3 2 7 7 H 1.09006 * 109.47034 * 304.99408 * 6 5 3 8 8 C 1.53006 * 109.47533 * 64.99668 * 6 5 3 9 9 C 1.53004 * 109.47337 * 184.99646 * 6 5 3 10 10 C 1.50704 * 109.46888 * 174.99603 * 9 6 5 11 11 O 1.21291 * 120.00259 * 0.02562 * 10 9 6 12 12 N 1.34779 * 119.99258 * 179.97438 * 10 9 6 13 13 C 1.40162 * 119.99437 * 180.02562 * 12 10 9 14 14 C 1.40415 * 125.97631 * 0.31570 * 13 12 10 15 15 C 1.35232 * 107.86655 * 180.13084 * 14 13 12 16 16 C 1.50703 * 126.06766 * 179.84998 * 15 14 13 17 17 N 1.34968 * 107.86163 * 359.58679 * 15 14 13 18 18 C 1.46509 * 125.97450 * 180.23081 * 17 15 14 19 19 C 1.50698 * 109.47025 * 89.99735 * 18 17 15 20 20 H 1.08000 * 120.00464 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99358 * 179.97438 * 19 18 17 22 22 N 1.31506 * 120.00418 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99496 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47105 * 90.00179 * 23 21 19 25 25 H 1.48499 * 109.46684 * 210.00001 * 23 21 19 26 26 H 1.48503 * 109.47226 * 329.99788 * 23 21 19 27 27 N 1.31221 * 125.97269 * 179.97438 * 13 12 10 28 28 H 1.08995 * 109.47164 * 300.00119 * 1 2 3 29 29 H 1.09008 * 109.46963 * 59.99992 * 1 2 3 30 30 H 1.09001 * 109.47099 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47877 * 59.99977 * 5 3 2 32 32 H 1.09000 * 109.47343 * 299.99647 * 5 3 2 33 33 H 1.08997 * 109.46982 * 59.99852 * 8 6 5 34 34 H 1.08997 * 109.47138 * 180.02562 * 8 6 5 35 35 H 1.09003 * 109.46668 * 300.00346 * 8 6 5 36 36 H 1.08995 * 109.46550 * 54.99892 * 9 6 5 37 37 H 1.08990 * 109.46928 * 294.99852 * 9 6 5 38 38 H 0.96991 * 120.00480 * 0.02562 * 12 10 9 39 39 H 1.07995 * 126.06342 * 0.02562 * 14 13 12 40 40 H 1.09002 * 109.47152 * 269.68932 * 16 15 14 41 41 H 1.09001 * 109.46980 * 149.69032 * 16 15 14 42 42 H 1.09004 * 109.47113 * 29.69013 * 16 15 14 43 43 H 1.08994 * 109.46750 * 210.00045 * 18 17 15 44 44 H 1.09004 * 109.46474 * 329.99737 * 18 17 15 45 45 H 0.96998 * 120.00265 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 0.0002 7 1 3.5376 3.2582 -0.8412 8 6 3.5606 3.4033 1.3081 9 6 5.5227 2.8238 -0.1260 10 6 5.9398 4.2668 -0.2489 11 8 5.1018 5.1435 -0.2362 12 7 7.2442 4.5830 -0.3718 13 6 7.6322 5.9250 -0.4855 14 6 6.7728 7.0355 -0.4798 15 6 7.5307 8.1474 -0.6139 16 6 7.0243 9.5660 -0.6608 17 7 8.8216 7.7615 -0.6923 18 6 9.9779 8.6492 -0.8388 19 6 10.4863 9.0411 0.5246 20 1 9.9974 8.6661 1.4116 21 6 11.5763 9.8776 0.6396 22 7 12.1720 10.3338 -0.4405 23 14 12.2070 10.3628 2.3297 24 1 13.2264 9.3807 2.7783 25 1 12.8185 11.7143 2.2605 26 1 11.0775 10.3793 3.2936 27 7 8.8626 6.3638 -0.6097 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.9558 0.7810 -0.8907 32 1 3.9564 0.7807 0.8892 33 1 4.0231 2.8872 2.1494 34 1 3.8693 4.4486 1.3084 35 1 2.4759 3.3450 1.3980 36 1 5.8437 2.2762 -1.0121 37 1 5.9846 2.3862 0.7588 38 1 7.9144 3.8819 -0.3815 39 1 5.6972 7.0065 -0.3867 40 1 6.8213 9.8453 -1.6947 41 1 7.7779 10.2348 -0.2451 42 1 6.1073 9.6440 -0.0767 43 1 10.7661 8.1318 -1.3857 44 1 9.6820 9.5435 -1.3872 45 1 12.9386 10.9225 -0.3596 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289113298.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:12 Heat of formation + Delta-G solvation = -57.292871 kcal Electronic energy + Delta-G solvation = -26574.707431 eV Core-core repulsion = 22593.995432 eV Total energy + Delta-G solvation = -3980.711999 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.96055 -40.67842 -39.48006 -37.17298 -35.60136 -34.70468 -33.38306 -31.49848 -30.90338 -29.83843 -28.20496 -27.23035 -26.52011 -26.29552 -23.33079 -22.42000 -21.25918 -20.10383 -19.74463 -19.16632 -17.90202 -17.21729 -16.86052 -16.69669 -16.38928 -16.09014 -15.73648 -15.28199 -14.86478 -14.36963 -14.22121 -14.14070 -13.88405 -13.54602 -13.16820 -12.81311 -12.59812 -12.48304 -12.44981 -12.36396 -12.29748 -12.05274 -11.70221 -11.52169 -11.41316 -11.21527 -11.12881 -11.07006 -10.97710 -10.84076 -10.57923 -10.41254 -10.23184 -9.89162 -9.53268 -9.46772 -8.65049 -7.92831 -7.44672 -6.26050 -4.33803 1.89668 2.32216 2.34416 2.82745 2.92909 3.21234 3.27479 3.32413 3.72945 3.86749 4.24982 4.30041 4.50322 4.55527 4.64768 4.72855 4.80484 4.98879 5.04647 5.07540 5.10832 5.18402 5.24045 5.47572 5.50335 5.60388 5.73089 5.89419 5.95676 6.09394 6.10792 6.16793 6.26565 6.41332 6.48692 6.59789 6.74504 6.93849 7.05060 7.43826 7.47197 7.65674 7.67725 7.88511 8.05739 8.29251 8.65870 8.75101 9.32629 10.81119 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.031465 B = 0.002006 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.652174 B =13953.172061 C =14092.999643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.364 6.364 3 C 0.459 3.541 4 O -0.497 6.497 5 C -0.111 4.111 6 C -0.064 4.064 7 H 0.091 0.909 8 C -0.163 4.163 9 C -0.133 4.133 10 C 0.518 3.482 11 O -0.510 6.510 12 N -0.633 5.633 13 C 0.263 3.737 14 C -0.290 4.290 15 C 0.091 3.909 16 C -0.089 4.089 17 N -0.317 5.317 18 C 0.258 3.742 19 C -0.536 4.536 20 H 0.064 0.936 21 C 0.066 3.934 22 N -0.891 5.891 23 Si 0.906 3.094 24 H -0.278 1.278 25 H -0.283 1.283 26 H -0.272 1.272 27 N -0.322 5.322 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.045 0.955 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.410 0.590 39 H 0.159 0.841 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.035 -19.638 -0.160 26.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.281 6.281 3 C 0.301 3.699 4 O -0.383 6.383 5 C -0.148 4.148 6 C -0.083 4.083 7 H 0.110 0.890 8 C -0.219 4.219 9 C -0.173 4.173 10 C 0.304 3.696 11 O -0.383 6.383 12 N -0.281 5.281 13 C 0.010 3.990 14 C -0.321 4.321 15 C -0.040 4.040 16 C -0.147 4.147 17 N -0.099 5.099 18 C 0.141 3.859 19 C -0.575 4.575 20 H 0.082 0.918 21 C -0.138 4.138 22 N -0.529 5.529 23 Si 0.733 3.267 24 H -0.203 1.203 25 H -0.209 1.209 26 H -0.197 1.197 27 N -0.153 5.153 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.118 0.882 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.064 0.936 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.245 0.755 39 H 0.177 0.823 40 H 0.089 0.911 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.405 -18.850 -0.309 25.658 hybrid contribution -0.022 0.067 0.919 0.921 sum -17.427 -18.783 0.609 25.630 Atomic orbital electron populations 1.23258 0.76334 1.03620 1.02654 1.86506 1.23494 1.33783 1.84329 1.23806 0.92313 0.81262 0.72477 1.90690 1.67188 1.36084 1.44373 1.21517 0.87543 0.99796 1.05984 1.20723 0.93077 0.92673 1.01870 0.89024 1.22108 1.02444 1.02790 0.94604 1.21689 0.97303 0.93433 1.04870 1.20556 0.81241 0.91568 0.76283 1.90642 1.50436 1.49706 1.47540 1.42552 1.08382 1.05006 1.72121 1.19019 0.92301 0.84738 1.02939 1.21258 1.01058 0.88790 1.20996 1.21072 0.85177 0.96975 1.00822 1.20379 1.01670 0.90272 1.02390 1.48987 1.06466 1.02618 1.51869 1.19687 0.80778 0.86778 0.98691 1.21326 1.14533 1.29802 0.91824 0.91753 1.24928 0.95842 0.95396 0.97609 1.69915 1.21748 1.33150 1.28108 0.86358 0.79141 0.77845 0.83362 1.20347 1.20870 1.19655 1.77243 1.17407 0.91380 1.29233 0.91865 0.91859 0.88168 0.87438 0.87415 0.93590 0.90084 0.91373 0.88279 0.88200 0.75529 0.82321 0.91100 0.89921 0.90626 0.93021 0.92802 0.92253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.56 101.05 1.07 1.27 16 2 O -0.36 -2.91 10.57 -39.27 -0.41 -3.33 16 3 C 0.46 4.13 7.67 36.00 0.28 4.41 16 4 O -0.50 -6.08 13.72 -18.75 -0.26 -6.34 16 5 C -0.11 -0.68 5.29 -27.88 -0.15 -0.83 16 6 C -0.06 -0.57 1.68 -90.62 -0.15 -0.73 16 7 H 0.09 1.02 7.77 -51.93 -0.40 0.62 16 8 C -0.16 -1.75 8.68 37.16 0.32 -1.43 16 9 C -0.13 -1.03 5.18 -27.88 -0.14 -1.17 16 10 C 0.52 6.83 7.51 -10.98 -0.08 6.75 16 11 O -0.51 -8.51 11.10 5.55 0.06 -8.45 16 12 N -0.63 -9.30 5.45 -11.13 -0.06 -9.36 16 13 C 0.26 5.27 8.11 -154.38 -1.25 4.02 16 14 C -0.29 -5.97 9.52 -39.83 -0.38 -6.35 16 15 C 0.09 1.93 6.92 -82.28 -0.57 1.36 16 16 C -0.09 -1.54 9.89 36.01 0.36 -1.18 16 17 N -0.32 -7.54 3.59 -58.32 -0.21 -7.75 16 18 C 0.26 6.64 5.81 -5.19 -0.03 6.61 16 19 C -0.54 -14.78 9.39 -34.44 -0.32 -15.10 16 20 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 21 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 22 N -0.89 -25.00 13.29 55.43 0.74 -24.26 16 23 Si 0.91 21.09 29.54 -169.99 -5.02 16.07 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 27 N -0.32 -7.40 12.59 31.44 0.40 -7.01 16 28 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 29 H 0.06 0.37 8.13 -51.92 -0.42 -0.05 16 30 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 1.09 5.95 -51.93 -0.31 0.79 16 35 H 0.07 0.81 5.96 -51.93 -0.31 0.50 16 36 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.41 4.68 8.82 -40.82 -0.36 4.32 16 39 H 0.16 3.18 5.92 -52.49 -0.31 2.87 16 40 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.08 1.53 7.71 -51.93 -0.40 1.13 16 42 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 44 H 0.05 1.37 7.65 -51.93 -0.40 0.97 16 45 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 378.26 15.07 5.70 5.70 Total: -1.00 -34.70 378.26 -6.91 -41.61 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -6.68 Total: 3.79 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -1.16 Total: -0.68 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: 0.86 Total: -48.37 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -0.61 Total: -18.12 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.70 -6.91 -41.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289113298.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.680 kcal (2) G-P(sol) polarization free energy of solvation -34.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds