Wall clock time and date at job start Tue Mar 31 2020 14:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34234 * 116.99870 * 2 1 4 4 O 1.20823 * 119.99840 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99769 * 180.02562 * 3 2 1 6 6 C 1.52998 * 109.47043 * 180.02562 * 5 3 2 7 7 H 1.09006 * 109.47034 * 304.99408 * 6 5 3 8 8 C 1.53006 * 109.47533 * 64.99668 * 6 5 3 9 9 C 1.53004 * 109.47337 * 184.99646 * 6 5 3 10 10 C 1.50704 * 109.46888 * 174.99603 * 9 6 5 11 11 O 1.21291 * 120.00259 * 0.02562 * 10 9 6 12 12 N 1.34779 * 119.99258 * 179.97438 * 10 9 6 13 13 C 1.40162 * 119.99437 * 180.02562 * 12 10 9 14 14 C 1.40415 * 125.97631 * 0.31570 * 13 12 10 15 15 C 1.35232 * 107.86655 * 180.13084 * 14 13 12 16 16 C 1.50703 * 126.06766 * 179.84998 * 15 14 13 17 17 N 1.34968 * 107.86163 * 359.58679 * 15 14 13 18 18 C 1.46509 * 125.97450 * 180.23081 * 17 15 14 19 19 C 1.50698 * 109.47025 * 89.99735 * 18 17 15 20 20 H 1.08000 * 120.00464 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99358 * 179.97438 * 19 18 17 22 22 N 1.31506 * 120.00418 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99496 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47105 * 90.00179 * 23 21 19 25 25 H 1.48499 * 109.46684 * 210.00001 * 23 21 19 26 26 H 1.48503 * 109.47226 * 329.99788 * 23 21 19 27 27 N 1.31221 * 125.97269 * 179.97438 * 13 12 10 28 28 H 1.08995 * 109.47164 * 300.00119 * 1 2 3 29 29 H 1.09008 * 109.46963 * 59.99992 * 1 2 3 30 30 H 1.09001 * 109.47099 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47877 * 59.99977 * 5 3 2 32 32 H 1.09000 * 109.47343 * 299.99647 * 5 3 2 33 33 H 1.08997 * 109.46982 * 59.99852 * 8 6 5 34 34 H 1.08997 * 109.47138 * 180.02562 * 8 6 5 35 35 H 1.09003 * 109.46668 * 300.00346 * 8 6 5 36 36 H 1.08995 * 109.46550 * 54.99892 * 9 6 5 37 37 H 1.08990 * 109.46928 * 294.99852 * 9 6 5 38 38 H 0.96991 * 120.00480 * 0.02562 * 12 10 9 39 39 H 1.07995 * 126.06342 * 0.02562 * 14 13 12 40 40 H 1.09002 * 109.47152 * 269.68932 * 16 15 14 41 41 H 1.09001 * 109.46980 * 149.69032 * 16 15 14 42 42 H 1.09004 * 109.47113 * 29.69013 * 16 15 14 43 43 H 1.08994 * 109.46750 * 210.00045 * 18 17 15 44 44 H 1.09004 * 109.46474 * 329.99737 * 18 17 15 45 45 H 0.96998 * 120.00265 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 0.0002 7 1 3.5376 3.2582 -0.8412 8 6 3.5606 3.4033 1.3081 9 6 5.5227 2.8238 -0.1260 10 6 5.9398 4.2668 -0.2489 11 8 5.1018 5.1435 -0.2362 12 7 7.2442 4.5830 -0.3718 13 6 7.6322 5.9250 -0.4855 14 6 6.7728 7.0355 -0.4798 15 6 7.5307 8.1474 -0.6139 16 6 7.0243 9.5660 -0.6608 17 7 8.8216 7.7615 -0.6923 18 6 9.9779 8.6492 -0.8388 19 6 10.4863 9.0411 0.5246 20 1 9.9974 8.6661 1.4116 21 6 11.5763 9.8776 0.6396 22 7 12.1720 10.3338 -0.4405 23 14 12.2070 10.3628 2.3297 24 1 13.2264 9.3807 2.7783 25 1 12.8185 11.7143 2.2605 26 1 11.0775 10.3793 3.2936 27 7 8.8626 6.3638 -0.6097 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.9558 0.7810 -0.8907 32 1 3.9564 0.7807 0.8892 33 1 4.0231 2.8872 2.1494 34 1 3.8693 4.4486 1.3084 35 1 2.4759 3.3450 1.3980 36 1 5.8437 2.2762 -1.0121 37 1 5.9846 2.3862 0.7588 38 1 7.9144 3.8819 -0.3815 39 1 5.6972 7.0065 -0.3867 40 1 6.8213 9.8453 -1.6947 41 1 7.7779 10.2348 -0.2451 42 1 6.1073 9.6440 -0.0767 43 1 10.7661 8.1318 -1.3857 44 1 9.6820 9.5435 -1.3872 45 1 12.9386 10.9225 -0.3596 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289113298.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:11 Heat of formation + Delta-G solvation = -79.601245 kcal Electronic energy + Delta-G solvation = -26575.674795 eV Core-core repulsion = 22593.995432 eV Total energy + Delta-G solvation = -3981.679363 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.28969 -41.56303 -40.66941 -37.85608 -36.57632 -35.95061 -35.28005 -33.07278 -32.64390 -30.54526 -29.18588 -28.20322 -27.86094 -27.78631 -25.06466 -23.55845 -22.26746 -21.23975 -20.91565 -20.47102 -18.81338 -18.61025 -18.05532 -17.65744 -17.49375 -17.19843 -17.00824 -16.71218 -16.21671 -15.84237 -15.55261 -14.97963 -14.78903 -14.68091 -14.36090 -14.23407 -13.85396 -13.73933 -13.65039 -13.56045 -13.23247 -13.14606 -12.91032 -12.86936 -12.79351 -12.69580 -12.31582 -12.22910 -12.10658 -11.92647 -11.76714 -11.63804 -11.51804 -11.30788 -11.28441 -10.75186 -10.67247 -9.56419 -9.11317 -8.33001 -6.50949 0.95548 1.25635 1.35881 1.37656 1.40210 1.48290 1.51230 1.84430 2.26187 2.31085 2.46387 2.96404 3.52989 3.74622 3.89820 3.95643 3.99869 4.16922 4.31741 4.33918 4.38013 4.48038 4.59770 4.61402 4.73457 4.74096 4.74718 4.76882 4.81876 4.87383 4.96935 4.98803 5.02579 5.10278 5.16931 5.27629 5.39988 5.49048 5.53224 5.58573 5.80728 5.99023 6.26152 6.35682 6.61897 6.80832 7.04143 7.20072 7.23837 8.72745 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.031465 B = 0.002006 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.652174 B =13953.172061 C =14092.999643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.365 6.365 3 C 0.455 3.545 4 O -0.540 6.540 5 C -0.102 4.102 6 C -0.062 4.062 7 H 0.061 0.939 8 C -0.160 4.160 9 C -0.118 4.118 10 C 0.513 3.487 11 O -0.547 6.547 12 N -0.626 5.626 13 C 0.274 3.726 14 C -0.301 4.301 15 C 0.085 3.915 16 C -0.086 4.086 17 N -0.344 5.344 18 C 0.275 3.725 19 C -0.553 4.553 20 H 0.049 0.951 21 C 0.023 3.977 22 N -0.917 5.917 23 Si 0.971 3.029 24 H -0.273 1.273 25 H -0.270 1.270 26 H -0.271 1.271 27 N -0.359 5.359 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.130 0.870 31 H 0.141 0.859 32 H 0.139 0.861 33 H 0.067 0.933 34 H 0.047 0.953 35 H 0.049 0.951 36 H 0.140 0.860 37 H 0.136 0.864 38 H 0.426 0.574 39 H 0.164 0.836 40 H 0.092 0.908 41 H 0.067 0.933 42 H 0.100 0.900 43 H 0.025 0.975 44 H 0.050 0.950 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.183 -21.995 0.664 28.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C 0.300 3.700 4 O -0.430 6.430 5 C -0.139 4.139 6 C -0.081 4.081 7 H 0.080 0.920 8 C -0.217 4.217 9 C -0.158 4.158 10 C 0.302 3.698 11 O -0.423 6.423 12 N -0.276 5.276 13 C 0.019 3.981 14 C -0.332 4.332 15 C -0.046 4.046 16 C -0.144 4.144 17 N -0.126 5.126 18 C 0.156 3.844 19 C -0.592 4.592 20 H 0.067 0.933 21 C -0.178 4.178 22 N -0.555 5.555 23 Si 0.795 3.205 24 H -0.199 1.199 25 H -0.195 1.195 26 H -0.195 1.195 27 N -0.190 5.190 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.148 0.852 31 H 0.159 0.841 32 H 0.157 0.843 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.157 0.843 37 H 0.154 0.846 38 H 0.265 0.735 39 H 0.182 0.818 40 H 0.110 0.890 41 H 0.086 0.914 42 H 0.118 0.882 43 H 0.043 0.957 44 H 0.068 0.932 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.562 -21.260 0.507 27.580 hybrid contribution -0.140 0.713 0.638 0.967 sum -17.703 -20.546 1.145 27.145 Atomic orbital electron populations 1.23476 0.75406 1.05468 1.02164 1.86503 1.24517 1.33215 1.83906 1.24456 0.93520 0.80853 0.71170 1.90687 1.68326 1.37460 1.46501 1.21565 0.85429 0.97897 1.09018 1.20622 0.93767 0.94295 0.99410 0.92000 1.22044 1.01476 1.01324 0.96860 1.21776 0.96234 0.89361 1.08381 1.21744 0.79970 0.93713 0.74389 1.90635 1.51263 1.51518 1.48853 1.42784 1.09673 1.03101 1.72053 1.19408 0.91251 0.87138 1.00263 1.21437 1.01248 0.89050 1.21444 1.21734 0.84360 0.98905 0.99580 1.20487 1.02006 0.87757 1.04125 1.48767 1.06627 1.03006 1.54207 1.19235 0.80940 0.86613 0.97568 1.21432 1.15240 1.30501 0.91984 0.93304 1.25729 0.95699 0.94995 1.01376 1.69996 1.22100 1.33398 1.30037 0.85360 0.78466 0.77996 0.78695 1.19876 1.19515 1.19522 1.77162 1.19096 0.91192 1.31518 0.92402 0.92410 0.85155 0.84102 0.84343 0.91442 0.93398 0.93155 0.84264 0.84643 0.73537 0.81847 0.88978 0.91434 0.88170 0.95684 0.93188 0.91721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 113.37 1.20 1.49 16 2 O -0.36 -5.10 10.57 -51.46 -0.54 -5.64 16 3 C 0.45 7.46 7.67 71.24 0.55 8.01 16 4 O -0.54 -13.31 13.72 21.97 0.30 -13.01 16 5 C -0.10 -0.88 5.29 29.85 0.16 -0.72 16 6 C -0.06 -0.96 1.68 -10.79 -0.02 -0.98 16 7 H 0.06 1.35 7.77 -2.38 -0.02 1.33 16 8 C -0.16 -3.33 8.68 71.98 0.62 -2.71 16 9 C -0.12 -1.36 5.18 29.85 0.15 -1.21 16 10 C 0.51 12.65 7.51 87.66 0.66 13.31 16 11 O -0.55 -18.22 11.10 -3.06 -0.03 -18.26 16 12 N -0.63 -17.43 5.45 -307.50 -1.68 -19.11 16 13 C 0.27 10.99 8.11 133.32 1.08 12.07 16 14 C -0.30 -12.49 9.52 22.11 0.21 -12.28 16 15 C 0.08 3.65 6.92 41.38 0.29 3.93 16 16 C -0.09 -2.96 9.89 71.24 0.70 -2.26 16 17 N -0.34 -16.83 3.59 -338.43 -1.22 -18.05 16 18 C 0.28 14.71 5.81 85.63 0.50 15.21 16 19 C -0.55 -31.25 9.39 25.60 0.24 -31.01 16 20 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 21 C 0.02 1.27 5.46 84.66 0.46 1.73 16 22 N -0.92 -51.92 13.29 21.45 0.28 -51.64 16 23 Si 0.97 43.20 29.54 68.60 2.03 45.23 16 24 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 25 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 26 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 27 N -0.36 -16.83 12.59 -54.44 -0.69 -17.51 16 28 H 0.06 0.66 8.13 -2.39 -0.02 0.64 16 29 H 0.06 0.66 8.13 -2.38 -0.02 0.64 16 30 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.14 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.14 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.05 1.32 5.95 -2.39 -0.01 1.30 16 35 H 0.05 1.22 5.96 -2.39 -0.01 1.21 16 36 H 0.14 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.14 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.43 8.74 8.82 -92.71 -0.82 7.92 16 39 H 0.16 6.62 5.92 -2.91 -0.02 6.61 16 40 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 41 H 0.07 2.54 7.71 -2.39 -0.02 2.52 16 42 H 0.10 2.92 8.14 -2.38 -0.02 2.90 16 43 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.05 2.65 7.65 -2.39 -0.02 2.63 16 45 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -79.99 378.26 5.46 -74.54 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 0.19 Total: 18.89 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: 6.80 Total: 4.57 kcal Atomic # 7 Polarization: -103.02 SS G_CDS: -3.29 Total: -106.31 kcal Atomic # 8 Polarization: -36.64 SS G_CDS: -0.28 Total: -36.91 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -79.99 5.46 -74.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289113298.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.065 kcal (2) G-P(sol) polarization free energy of solvation -79.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds