Wall clock time and date at job start Tue Mar 31 2020 14:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99836 * 2 1 4 4 O 1.20833 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00262 * 180.27336 * 3 2 1 6 6 C 1.52996 * 109.47491 * 179.72204 * 5 3 2 7 7 H 1.08999 * 109.47456 * 54.99697 * 6 5 3 8 8 C 1.53008 * 109.46909 * 294.99776 * 6 5 3 9 9 C 1.53004 * 109.47336 * 175.00150 * 6 5 3 10 10 C 1.50692 * 109.47074 * 184.99846 * 9 6 5 11 11 O 1.21292 * 120.00323 * 359.97438 * 10 9 6 12 12 N 1.34781 * 120.00105 * 179.97438 * 10 9 6 13 13 C 1.40153 * 120.00368 * 180.02562 * 12 10 9 14 14 C 1.40416 * 125.97259 * 359.71709 * 13 12 10 15 15 C 1.35234 * 107.86674 * 179.83072 * 14 13 12 16 16 C 1.50697 * 126.06966 * 180.13815 * 15 14 13 17 17 N 1.34967 * 107.86250 * 0.42594 * 15 14 13 18 18 C 1.46501 * 125.97940 * 179.69472 * 17 15 14 19 19 C 1.50699 * 109.46889 * 270.02016 * 18 17 15 20 20 H 1.08000 * 120.00354 * 359.97438 * 19 18 17 21 21 C 1.37881 * 119.99947 * 179.97438 * 19 18 17 22 22 N 1.31521 * 119.99749 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00331 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47246 * 59.99599 * 23 21 19 25 25 H 1.48501 * 109.47575 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47039 * 300.00081 * 23 21 19 27 27 N 1.31220 * 125.97435 * 180.02562 * 13 12 10 28 28 H 1.08998 * 109.47630 * 300.00638 * 1 2 3 29 29 H 1.09004 * 109.46770 * 60.01042 * 1 2 3 30 30 H 1.09001 * 109.46882 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46801 * 299.72165 * 5 3 2 32 32 H 1.09000 * 109.47461 * 59.71633 * 5 3 2 33 33 H 1.09001 * 109.46930 * 179.97438 * 8 6 5 34 34 H 1.09000 * 109.46973 * 299.99649 * 8 6 5 35 35 H 1.08995 * 109.47053 * 60.00309 * 8 6 5 36 36 H 1.09005 * 109.46502 * 304.99456 * 9 6 5 37 37 H 1.08996 * 109.47343 * 64.99524 * 9 6 5 38 38 H 0.97004 * 119.99811 * 0.02562 * 12 10 9 39 39 H 1.07999 * 126.06165 * 359.97438 * 14 13 12 40 40 H 1.09005 * 109.46915 * 270.34095 * 16 15 14 41 41 H 1.09000 * 109.47342 * 30.34036 * 16 15 14 42 42 H 1.08998 * 109.47681 * 150.33869 * 16 15 14 43 43 H 1.09005 * 109.46598 * 30.01551 * 18 17 15 44 44 H 1.08997 * 109.47347 * 150.01828 * 18 17 15 45 45 H 0.96997 * 119.99584 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0062 6 6 4.0000 2.7422 -0.0119 7 1 3.5411 3.2600 0.8303 8 6 3.5548 3.4006 -1.3193 9 6 5.5232 2.8242 0.1075 10 6 5.9408 4.2673 0.2254 11 8 5.1027 5.1441 0.2146 12 7 7.2456 4.5839 0.3430 13 6 7.6340 5.9260 0.4532 14 6 6.7745 7.0363 0.4497 15 6 7.5328 8.1485 0.5798 16 6 7.0265 9.5671 0.6271 17 7 8.8241 7.7628 0.6535 18 6 9.9809 8.6507 0.7932 19 6 10.4832 9.0401 -0.5732 20 1 9.9903 8.6635 -1.4573 21 6 11.5720 9.8772 -0.6948 22 7 12.1719 10.3363 0.3819 23 14 12.1951 10.3594 -2.3884 24 1 11.1177 11.0620 -3.1307 25 1 13.3676 11.2596 -2.2469 26 1 12.5955 9.1393 -3.1344 27 7 8.8649 6.3650 0.5721 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 3.9595 0.7833 0.8836 32 1 3.9525 0.7785 -0.8964 33 1 3.8634 4.4460 -1.3232 34 1 4.0137 2.8828 -2.1616 35 1 2.4697 3.3422 -1.4044 36 1 5.8480 2.2784 0.9934 37 1 5.9813 2.3846 -0.7785 38 1 7.9159 3.8827 0.3513 39 1 5.6985 7.0071 0.3612 40 1 6.9811 9.9705 -0.3845 41 1 6.0305 9.5828 1.0696 42 1 7.7016 10.1740 1.2304 43 1 9.6875 9.5461 1.3413 44 1 10.7717 8.1344 1.3374 45 1 12.9382 10.9249 0.2964 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289113300.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:15 Heat of formation + Delta-G solvation = -56.936391 kcal Electronic energy + Delta-G solvation = -26573.962732 eV Core-core repulsion = 22593.266191 eV Total energy + Delta-G solvation = -3980.696541 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.96033 -40.67922 -39.48113 -37.17287 -35.60100 -34.70481 -33.37790 -31.50694 -30.90222 -29.83870 -28.20504 -27.23062 -26.52289 -26.29578 -23.33390 -22.42231 -21.25995 -20.10366 -19.74412 -19.16451 -17.90168 -17.21690 -16.86080 -16.69330 -16.39427 -16.09900 -15.73823 -15.27885 -14.86471 -14.36910 -14.22072 -14.14441 -13.88962 -13.54906 -13.17720 -12.83364 -12.59897 -12.47971 -12.44317 -12.36383 -12.27083 -12.07095 -11.70882 -11.51929 -11.39946 -11.21860 -11.12881 -11.09086 -10.97747 -10.81017 -10.57888 -10.43124 -10.22368 -9.89540 -9.54245 -9.47186 -8.63997 -7.92926 -7.44659 -6.25537 -4.33164 1.89596 2.32206 2.34400 2.82732 2.93023 3.23159 3.26974 3.31341 3.72949 3.86295 4.24996 4.30354 4.50292 4.55482 4.64747 4.72823 4.80474 4.98844 5.04618 5.08139 5.10781 5.18376 5.23964 5.47134 5.50328 5.60342 5.72192 5.89403 5.93246 6.09488 6.11881 6.16787 6.26764 6.40679 6.46440 6.58181 6.73828 6.93840 7.05439 7.43817 7.47113 7.65775 7.67822 7.88897 8.05618 8.29189 8.65818 8.74944 9.33003 10.81673 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.031453 B = 0.002006 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.017374 B =13951.916784 C =14091.479768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.364 6.364 3 C 0.459 3.541 4 O -0.497 6.497 5 C -0.111 4.111 6 C -0.064 4.064 7 H 0.091 0.909 8 C -0.163 4.163 9 C -0.133 4.133 10 C 0.518 3.482 11 O -0.510 6.510 12 N -0.633 5.633 13 C 0.263 3.737 14 C -0.290 4.290 15 C 0.091 3.909 16 C -0.084 4.084 17 N -0.317 5.317 18 C 0.259 3.741 19 C -0.536 4.536 20 H 0.063 0.937 21 C 0.066 3.934 22 N -0.892 5.892 23 Si 0.907 3.093 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.275 1.275 27 N -0.322 5.322 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.045 0.955 35 H 0.067 0.933 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.410 0.590 39 H 0.159 0.841 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.054 0.946 44 H 0.052 0.948 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.054 -19.658 0.278 26.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.281 6.281 3 C 0.301 3.699 4 O -0.383 6.383 5 C -0.148 4.148 6 C -0.083 4.083 7 H 0.110 0.890 8 C -0.219 4.219 9 C -0.173 4.173 10 C 0.304 3.696 11 O -0.383 6.383 12 N -0.281 5.281 13 C 0.010 3.990 14 C -0.321 4.321 15 C -0.041 4.041 16 C -0.142 4.142 17 N -0.099 5.099 18 C 0.141 3.859 19 C -0.575 4.575 20 H 0.082 0.918 21 C -0.138 4.138 22 N -0.530 5.530 23 Si 0.734 3.266 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.200 1.200 27 N -0.153 5.153 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.118 0.882 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.099 0.901 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.245 0.755 39 H 0.177 0.823 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.418 -18.871 0.427 25.684 hybrid contribution -0.029 0.080 -0.946 0.950 sum -17.447 -18.791 -0.519 25.647 Atomic orbital electron populations 1.23258 0.76332 1.03621 1.02655 1.86505 1.23495 1.33780 1.84325 1.23808 0.92315 0.81263 0.72477 1.90692 1.67192 1.36081 1.44377 1.21518 0.87542 0.99796 1.05983 1.20721 0.93055 0.92680 1.01881 0.89022 1.22109 1.02434 1.02801 0.94605 1.21689 0.97294 0.93428 1.04885 1.20554 0.81241 0.91571 0.76278 1.90642 1.50457 1.49715 1.47510 1.42553 1.08348 1.04991 1.72171 1.19015 0.92295 0.84736 1.02924 1.21252 1.01064 0.88769 1.21052 1.21072 0.85196 0.96972 1.00835 1.20332 1.00758 0.89906 1.03228 1.48981 1.06448 1.02624 1.51873 1.19682 0.80721 0.86784 0.98715 1.21278 1.14595 1.29823 0.91766 0.91832 1.24927 0.95828 0.95376 0.97645 1.69913 1.21704 1.33055 1.28295 0.86409 0.78323 0.78533 0.83377 1.19936 1.20951 1.20006 1.77251 1.17388 0.91341 1.29284 0.91857 0.91864 0.88169 0.87447 0.87407 0.90086 0.93592 0.91369 0.88274 0.88200 0.75526 0.82311 0.90436 0.90823 0.90877 0.92809 0.93028 0.92208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.56 101.05 1.07 1.27 16 2 O -0.36 -2.91 10.57 -39.26 -0.41 -3.32 16 3 C 0.46 4.13 7.68 36.00 0.28 4.41 16 4 O -0.50 -6.08 13.72 -18.76 -0.26 -6.34 16 5 C -0.11 -0.68 5.29 -27.89 -0.15 -0.83 16 6 C -0.06 -0.57 1.69 -90.62 -0.15 -0.73 16 7 H 0.09 1.02 7.77 -51.93 -0.40 0.62 16 8 C -0.16 -1.75 8.68 37.16 0.32 -1.43 16 9 C -0.13 -1.03 5.17 -27.88 -0.14 -1.17 16 10 C 0.52 6.83 7.51 -10.99 -0.08 6.75 16 11 O -0.51 -8.50 11.10 5.55 0.06 -8.44 16 12 N -0.63 -9.29 5.45 -11.13 -0.06 -9.35 16 13 C 0.26 5.28 8.11 -154.39 -1.25 4.02 16 14 C -0.29 -5.97 9.52 -39.83 -0.38 -6.35 16 15 C 0.09 1.92 6.92 -82.28 -0.57 1.35 16 16 C -0.08 -1.46 10.11 36.00 0.36 -1.09 16 17 N -0.32 -7.54 3.59 -58.33 -0.21 -7.75 16 18 C 0.26 6.65 5.99 -5.19 -0.03 6.62 16 19 C -0.54 -14.80 9.39 -34.44 -0.32 -15.12 16 20 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 21 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 22 N -0.89 -25.05 13.29 55.43 0.74 -24.31 16 23 Si 0.91 21.13 29.54 -169.99 -5.02 16.11 16 24 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 27 N -0.32 -7.40 12.59 31.44 0.40 -7.01 16 28 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 29 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 30 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 1.09 5.95 -51.93 -0.31 0.78 16 34 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.81 5.96 -51.93 -0.31 0.50 16 36 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.41 4.68 8.82 -40.82 -0.36 4.32 16 39 H 0.16 3.18 5.92 -52.49 -0.31 2.87 16 40 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 41 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.07 1.27 7.07 -51.93 -0.37 0.90 16 43 H 0.05 1.37 7.04 -51.93 -0.37 1.00 16 44 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 45 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 377.41 15.07 5.69 5.69 Total: -1.00 -34.73 377.41 -6.85 -41.58 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -6.62 Total: 3.75 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -1.15 Total: -0.61 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: 0.86 Total: -48.42 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.61 Total: -18.10 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.73 -6.85 -41.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289113300.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.352 kcal (2) G-P(sol) polarization free energy of solvation -34.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds