Wall clock time and date at job start Tue Mar 31 2020 13:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42895 * 114.00516 * 2 1 4 4 C 1.53001 * 109.47761 * 179.97438 * 3 2 1 5 5 O 1.42899 * 109.47027 * 64.99741 * 4 3 2 6 6 C 1.42903 * 113.99961 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.47109 * 180.02562 * 6 5 4 8 8 N 1.46496 * 109.47014 * 64.99879 * 7 6 5 9 9 C 1.46506 * 120.00152 * 269.99785 * 8 7 6 10 10 C 1.34782 * 120.00223 * 90.00138 * 8 7 6 11 11 O 1.21589 * 119.99666 * 355.04278 * 10 8 7 12 12 C 1.47534 * 120.00171 * 175.04286 * 10 8 7 13 13 C 1.39671 * 120.19457 * 316.67375 * 12 10 8 14 14 C 1.37831 * 119.91262 * 179.97438 * 13 12 10 15 15 C 1.38568 * 120.32738 * 0.02562 * 14 13 12 16 16 C 1.38020 * 120.40296 * 359.97438 * 15 14 13 17 17 C 1.38836 * 120.07274 * 359.97438 * 16 15 14 18 18 O 1.35519 * 120.16647 * 180.02562 * 17 16 15 19 19 C 1.34814 * 116.99610 * 354.74033 * 18 17 16 20 20 H 1.08001 * 120.00386 * 4.04176 * 19 18 17 21 21 C 1.38703 * 119.99886 * 184.04016 * 19 18 17 22 22 N 1.31517 * 119.99817 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99878 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47343 * 359.97438 * 23 21 19 25 25 H 1.48490 * 109.47238 * 119.99966 * 23 21 19 26 26 H 1.48503 * 109.46718 * 240.00081 * 23 21 19 27 27 H 1.09003 * 109.47249 * 300.00525 * 1 2 3 28 28 H 1.09004 * 109.46780 * 60.00189 * 1 2 3 29 29 H 1.09003 * 109.47406 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47424 * 59.99578 * 3 2 1 31 31 H 1.09005 * 109.47262 * 299.99824 * 3 2 1 32 32 H 1.09001 * 109.46890 * 304.99902 * 4 3 2 33 33 H 1.09001 * 109.47408 * 184.99904 * 4 3 2 34 34 H 1.08995 * 109.47037 * 60.00123 * 6 5 4 35 35 H 1.08998 * 109.46760 * 299.99626 * 6 5 4 36 36 H 1.09001 * 109.46990 * 304.99914 * 7 6 5 37 37 H 1.08996 * 109.47321 * 184.99871 * 7 6 5 38 38 H 1.08999 * 109.47113 * 266.07119 * 9 8 7 39 39 H 1.08997 * 109.46806 * 26.06921 * 9 8 7 40 40 H 1.08997 * 109.47359 * 146.06934 * 9 8 7 41 41 H 1.07994 * 120.04426 * 0.24926 * 13 12 10 42 42 H 1.08001 * 119.83278 * 179.97438 * 14 13 12 43 43 H 1.07997 * 119.80159 * 179.97438 * 15 14 13 44 44 H 1.08002 * 119.96683 * 180.02562 * 16 15 14 45 45 H 0.97003 * 119.99321 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 8 3.9658 0.5791 -1.2201 6 6 5.3822 0.4186 -1.3215 7 6 5.7267 -0.2351 -2.6613 8 7 5.3598 0.6688 -3.7542 9 6 4.0204 0.5996 -4.3438 10 6 6.2545 1.5641 -4.2175 11 8 7.3337 1.6839 -3.6703 12 6 5.9244 2.3987 -5.3884 13 6 5.2989 1.8319 -6.5011 14 6 4.9927 2.6172 -7.5917 15 6 5.3027 3.9677 -7.5907 16 6 5.9208 4.5416 -6.4982 17 6 6.2359 3.7664 -5.3903 18 8 6.8424 4.3280 -4.3164 19 6 7.2118 5.6197 -4.4283 20 1 6.9628 6.1774 -5.3190 21 6 7.9118 6.2325 -3.3995 22 7 8.2145 5.5535 -2.3146 23 14 8.4231 8.0225 -3.5542 24 1 7.9646 8.5570 -4.8616 25 1 7.8095 8.8094 -2.4546 26 1 9.9023 8.1237 -3.4699 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6886 1.8464 0.8899 31 1 1.6887 1.8463 -0.8900 32 1 3.8507 0.5685 0.8427 33 1 3.9785 2.1765 0.0902 34 1 5.7354 -0.2137 -0.5069 35 1 5.8638 1.3944 -1.2593 36 1 5.1750 -1.1697 -2.7621 37 1 6.7967 -0.4386 -2.7018 38 1 4.0408 -0.0536 -5.2161 39 1 3.3201 0.2027 -3.6089 40 1 3.7039 1.5982 -4.6450 41 1 5.0515 0.7807 -6.5053 42 1 4.5094 2.1774 -8.4516 43 1 5.0593 4.5750 -8.4499 44 1 6.1590 5.5950 -6.5047 45 1 8.7037 5.9822 -1.5949 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290153732.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:08 Heat of formation + Delta-G solvation = -139.246428 kcal Electronic energy + Delta-G solvation = -27950.760733 eV Core-core repulsion = 23934.202210 eV Total energy + Delta-G solvation = -4016.558523 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.43919 -40.10516 -39.34066 -38.22240 -38.01618 -36.36293 -34.33795 -32.83188 -31.50995 -30.60574 -29.94857 -27.51494 -27.37126 -27.07433 -25.03197 -23.58539 -23.48442 -22.90323 -20.64055 -19.89798 -18.83514 -18.18967 -17.85647 -17.56227 -17.30226 -16.85705 -16.47263 -16.35789 -16.21536 -16.04471 -15.68333 -15.52515 -15.42663 -15.21917 -14.61779 -14.37788 -14.26312 -13.78188 -13.68549 -13.57794 -13.28247 -13.05910 -13.00385 -12.86437 -12.70970 -12.61885 -12.50185 -12.26607 -12.21651 -12.10118 -11.95251 -11.43245 -10.85705 -10.78759 -10.65576 -10.56876 -9.80012 -9.57536 -9.03990 -8.47387 -6.17467 0.22739 0.72233 1.31247 1.41643 1.50962 1.85444 2.14205 2.17337 2.63220 2.82308 2.84221 3.16568 3.44380 3.76179 3.96429 4.08337 4.11268 4.12460 4.17336 4.27499 4.31098 4.40938 4.42234 4.43391 4.55303 4.56809 4.58401 4.60837 4.69208 4.71424 4.75776 4.84579 4.87278 4.98181 5.02793 5.08073 5.15673 5.51509 5.58685 5.69082 5.71010 5.95361 6.08806 6.17832 6.23007 6.46325 6.93790 7.33389 7.77091 8.74599 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.010115 B = 0.003943 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2767.441459 B = 7099.397886 C = 8427.072259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.408 6.408 3 C 0.069 3.931 4 C 0.056 3.944 5 O -0.385 6.385 6 C 0.051 3.949 7 C 0.124 3.876 8 N -0.608 5.608 9 C 0.087 3.913 10 C 0.559 3.441 11 O -0.579 6.579 12 C -0.234 4.234 13 C -0.034 4.034 14 C -0.195 4.195 15 C -0.045 4.045 16 C -0.254 4.254 17 C 0.147 3.853 18 O -0.209 6.209 19 C -0.421 4.421 20 H 0.107 0.893 21 C -0.023 4.023 22 N -0.912 5.912 23 Si 1.022 2.978 24 H -0.246 1.246 25 H -0.267 1.267 26 H -0.271 1.271 27 H 0.052 0.948 28 H 0.046 0.954 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.079 0.921 35 H 0.012 0.988 36 H 0.121 0.879 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.056 0.944 41 H 0.157 0.843 42 H 0.164 0.836 43 H 0.154 0.846 44 H 0.123 0.877 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.814 -10.250 -2.209 18.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C -0.008 4.008 4 C -0.020 4.020 5 O -0.304 6.304 6 C -0.027 4.027 7 C 0.001 3.999 8 N -0.341 5.341 9 C -0.054 4.054 10 C 0.350 3.650 11 O -0.459 6.459 12 C -0.238 4.238 13 C -0.052 4.052 14 C -0.213 4.213 15 C -0.063 4.063 16 C -0.273 4.273 17 C 0.093 3.907 18 O -0.113 6.113 19 C -0.497 4.497 20 H 0.124 0.876 21 C -0.221 4.221 22 N -0.549 5.549 23 Si 0.840 3.160 24 H -0.169 1.169 25 H -0.192 1.192 26 H -0.196 1.196 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.116 0.884 30 H 0.103 0.897 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.030 0.970 36 H 0.139 0.861 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.075 0.925 41 H 0.174 0.826 42 H 0.182 0.818 43 H 0.172 0.828 44 H 0.141 0.859 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.125 -10.491 -1.630 18.479 hybrid contribution 0.737 1.452 0.771 1.802 sum -14.388 -9.039 -0.858 17.013 Atomic orbital electron populations 1.22928 0.79495 1.03864 1.00781 1.87897 1.21431 1.27820 1.95578 1.22542 0.91167 0.85300 1.01751 1.22639 0.94423 0.97439 0.87524 1.87847 1.21561 1.82014 1.39013 1.22888 0.81689 0.99008 0.99134 1.21563 1.01703 0.93027 0.83587 1.47718 1.14319 1.36054 1.36047 1.22017 0.81602 1.02430 0.99398 1.18613 0.83591 0.79343 0.83459 1.90775 1.26398 1.68014 1.60678 1.19176 1.14583 0.91255 0.98783 1.21355 0.92637 1.00588 0.90622 1.21170 1.06695 0.93533 0.99899 1.21403 0.92763 0.95938 0.96176 1.21282 1.09537 1.00807 0.95686 1.19943 0.90620 0.92306 0.87784 1.84022 1.65860 1.27654 1.33767 1.22001 1.37121 0.84580 1.05991 0.87617 1.26719 0.95716 1.05661 0.94018 1.70285 1.38170 1.39151 1.07245 0.84505 0.78230 0.73547 0.79695 1.16873 1.19157 1.19598 0.92910 0.93582 0.88397 0.89653 0.92832 0.91585 0.92868 0.90279 0.96997 0.86131 0.89884 0.89794 0.89519 0.92528 0.82600 0.81822 0.82838 0.85937 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.63 16 2 O -0.41 -9.52 10.67 -144.35 -1.54 -11.06 16 3 C 0.07 1.54 6.32 71.98 0.45 2.00 16 4 C 0.06 1.51 6.32 71.98 0.45 1.97 16 5 O -0.38 -12.03 9.20 -144.35 -1.33 -13.36 16 6 C 0.05 1.66 6.28 71.98 0.45 2.11 16 7 C 0.12 3.82 5.76 86.38 0.50 4.32 16 8 N -0.61 -21.63 2.84 -850.55 -2.41 -24.04 16 9 C 0.09 2.30 8.77 127.77 1.12 3.42 16 10 C 0.56 26.46 7.05 86.69 0.61 27.07 16 11 O -0.58 -34.00 15.92 9.25 0.15 -33.86 16 12 C -0.23 -10.48 4.92 -19.99 -0.10 -10.57 16 13 C -0.03 -1.08 7.93 22.52 0.18 -0.90 16 14 C -0.19 -5.36 10.02 22.25 0.22 -5.14 16 15 C -0.04 -1.42 10.03 22.30 0.22 -1.19 16 16 C -0.25 -11.00 9.16 22.36 0.20 -10.79 16 17 C 0.15 7.69 6.63 22.91 0.15 7.84 16 18 O -0.21 -13.40 8.64 -6.80 -0.06 -13.45 16 19 C -0.42 -25.61 9.49 67.93 0.64 -24.96 16 20 H 0.11 5.79 5.20 -2.91 -0.02 5.78 16 21 C -0.02 -1.36 5.49 84.85 0.47 -0.89 16 22 N -0.91 -59.47 13.67 21.62 0.30 -59.17 16 23 Si 1.02 44.42 29.55 68.60 2.03 46.45 16 24 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 25 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 26 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 27 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.05 0.65 8.14 -2.38 -0.02 0.64 16 29 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 32 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.12 2.73 8.07 -2.39 -0.02 2.71 16 37 H 0.08 2.77 7.49 -2.39 -0.02 2.75 16 38 H 0.08 1.61 6.72 -2.39 -0.02 1.60 16 39 H 0.09 2.10 7.19 -2.39 -0.02 2.09 16 40 H 0.06 1.67 6.65 -2.39 -0.02 1.65 16 41 H 0.16 3.77 6.07 -2.91 -0.02 3.75 16 42 H 0.16 2.95 8.06 -2.91 -0.02 2.93 16 43 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 44 H 0.12 5.38 5.64 -2.91 -0.02 5.36 16 45 H 0.27 16.12 8.31 -92.71 -0.77 15.35 16 Total: -1.00 -89.20 377.74 4.96 -84.25 By element: Atomic # 1 Polarization: 27.35 SS G_CDS: 0.99 Total: 28.34 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: 6.83 Total: -4.09 kcal Atomic # 7 Polarization: -81.10 SS G_CDS: -2.12 Total: -83.22 kcal Atomic # 8 Polarization: -68.95 SS G_CDS: -2.78 Total: -71.73 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -89.20 4.96 -84.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290153732.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.998 kcal (2) G-P(sol) polarization free energy of solvation -89.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds