Wall clock time and date at job start Tue Mar 31 2020 14:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35980 * 117.00112 * 2 1 4 4 C 1.38707 * 119.97879 * 359.97438 * 3 2 1 5 5 C 1.38501 * 119.94774 * 180.02562 * 4 3 2 6 6 O 1.35991 * 120.04441 * 180.27756 * 5 4 3 7 7 C 1.42904 * 117.00146 * 359.72100 * 6 5 4 8 8 C 1.39175 * 119.90949 * 359.97438 * 5 4 3 9 9 O 1.36072 * 120.01708 * 179.97438 * 8 5 4 10 10 C 1.42895 * 117.00318 * 180.02562 * 9 8 5 11 11 C 1.38490 * 119.96565 * 0.02562 * 8 5 4 12 12 C 1.38272 * 120.04925 * 0.02562 * 11 8 5 13 13 C 1.50701 * 119.95539 * 179.97438 * 12 11 8 14 14 N 1.46496 * 109.47107 * 259.99964 * 13 12 11 15 15 C 1.34780 * 120.00157 * 179.97438 * 14 13 12 16 16 O 1.21287 * 119.99541 * 0.02562 * 15 14 13 17 17 C 1.50694 * 120.00506 * 180.02562 * 15 14 13 18 18 C 1.52998 * 109.47569 * 179.97438 * 17 15 14 19 19 C 1.50694 * 109.47375 * 179.97438 * 18 17 15 20 20 H 1.07999 * 120.00031 * 0.02562 * 19 18 17 21 21 C 1.37879 * 120.00069 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00128 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99954 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46755 * 90.00207 * 23 21 19 25 25 H 1.48492 * 109.47122 * 210.00181 * 23 21 19 26 26 H 1.48497 * 109.46960 * 330.00176 * 23 21 19 27 27 H 1.09004 * 109.47234 * 300.00000 * 1 2 3 28 28 H 1.09000 * 109.47453 * 60.00406 * 1 2 3 29 29 H 1.09005 * 109.47234 * 180.02562 * 1 2 3 30 30 H 1.08009 * 120.02760 * 0.02562 * 4 3 2 31 31 H 1.08994 * 109.47533 * 180.02562 * 7 6 5 32 32 H 1.09003 * 109.47085 * 300.00694 * 7 6 5 33 33 H 1.09002 * 109.47177 * 60.00059 * 7 6 5 34 34 H 1.08999 * 109.47434 * 180.02562 * 10 9 8 35 35 H 1.08999 * 109.46936 * 300.00379 * 10 9 8 36 36 H 1.09000 * 109.47117 * 59.99832 * 10 9 8 37 37 H 1.07991 * 119.97255 * 179.97438 * 11 8 5 38 38 H 1.09009 * 109.47069 * 19.99934 * 13 12 11 39 39 H 1.08991 * 109.47369 * 139.99539 * 13 12 11 40 40 H 0.96997 * 120.00265 * 359.97438 * 14 13 12 41 41 H 1.08999 * 109.47118 * 300.00252 * 17 15 14 42 42 H 1.09004 * 109.47278 * 59.99315 * 17 15 14 43 43 H 1.08999 * 109.47177 * 300.00302 * 18 17 15 44 44 H 1.09008 * 109.46949 * 59.99731 * 18 17 15 45 45 H 0.96997 * 120.00218 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2904 2.3746 -0.0005 5 6 1.9199 3.6083 -0.0011 6 8 1.1808 4.7498 0.0041 7 6 -0.2406 4.6024 0.0037 8 6 3.3099 3.6782 -0.0005 9 8 3.9306 4.8891 -0.0016 10 6 5.3596 4.8857 -0.0015 11 6 4.0610 2.5146 0.0000 12 6 3.4309 1.2838 -0.0005 13 6 4.2503 0.0190 -0.0005 14 7 4.3150 -0.5209 -1.3608 15 6 5.0001 -1.6559 -1.6035 16 8 5.5627 -2.2305 -0.6955 17 6 5.0672 -2.2111 -3.0029 18 6 5.9001 -3.4945 -3.0031 19 6 5.9666 -4.0499 -4.4024 20 1 5.4654 -3.5385 -5.2108 21 6 6.6683 -5.2106 -4.6507 22 7 7.2790 -5.8332 -3.6664 23 14 6.7514 -5.8987 -6.3855 24 1 7.9299 -5.3300 -7.0876 25 1 6.8764 -7.3771 -6.3260 26 1 5.5138 -5.5358 -7.1217 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 0.2118 2.3182 -0.0005 31 1 -0.7081 5.5870 0.0077 32 1 -0.5492 4.0576 -0.8885 33 1 -0.5489 4.0499 0.8914 34 1 5.7254 5.9124 -0.0020 35 1 5.7216 4.3717 0.8889 36 1 5.7217 4.3701 -0.8910 37 1 5.1395 2.5687 0.0000 38 1 5.2583 0.2391 0.3514 39 1 3.7870 -0.7141 0.6597 40 1 3.8648 -0.0616 -2.0869 41 1 4.0595 -2.4314 -3.3551 42 1 5.5304 -1.4776 -3.6629 43 1 6.9078 -3.2738 -2.6511 44 1 5.4372 -4.2281 -2.3430 45 1 7.7730 -6.6495 -3.8412 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290937913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:21 Heat of formation + Delta-G solvation = -127.889789 kcal Electronic energy + Delta-G solvation = -27004.353166 eV Core-core repulsion = 22988.287104 eV Total energy + Delta-G solvation = -4016.066062 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.19136 -39.38898 -38.93200 -38.68883 -36.53509 -34.25545 -33.37785 -31.38164 -30.60871 -30.05126 -28.50667 -27.57700 -27.32351 -25.90837 -24.70953 -22.25055 -21.98172 -21.24823 -19.58702 -19.11506 -17.81823 -17.58688 -16.85667 -16.53532 -16.42462 -15.86352 -15.60285 -15.55613 -15.36061 -15.04880 -15.03469 -14.80916 -14.39582 -14.34602 -13.54989 -13.09533 -13.03637 -12.88533 -12.66721 -12.47619 -12.13949 -11.97856 -11.88903 -11.87153 -11.66899 -11.51528 -11.24314 -11.09305 -10.89368 -10.57163 -10.49812 -9.88904 -9.60105 -9.19499 -9.05874 -8.86271 -8.64031 -8.27506 -7.78432 -5.91899 -3.95948 0.84352 1.12324 2.85622 2.94277 3.09528 3.22754 3.35804 3.38409 3.41728 3.44557 3.91619 4.34445 4.46391 4.51344 4.55169 4.68250 4.74312 4.81318 4.85525 4.89991 4.92822 4.95220 5.07867 5.13986 5.21338 5.27315 5.36413 5.42846 5.51630 5.68419 5.75752 5.97854 6.09690 6.25446 6.31845 6.33592 6.67662 6.83637 6.97183 6.99229 7.29142 7.79548 7.93023 8.02794 8.12838 8.44260 8.90033 9.13213 9.67175 11.19087 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.017331 B = 0.002420 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.209575 B =11566.472916 C =12214.094054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.301 6.301 3 C 0.151 3.849 4 C -0.265 4.265 5 C 0.143 3.857 6 O -0.303 6.303 7 C 0.025 3.975 8 C 0.061 3.939 9 O -0.308 6.308 10 C 0.025 3.975 11 C -0.114 4.114 12 C -0.132 4.132 13 C 0.175 3.825 14 N -0.736 5.736 15 C 0.510 3.490 16 O -0.537 6.537 17 C -0.129 4.129 18 C 0.037 3.963 19 C -0.526 4.526 20 H 0.055 0.945 21 C 0.057 3.943 22 N -0.890 5.890 23 Si 0.892 3.108 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.274 1.274 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.103 0.897 30 H 0.142 0.858 31 H 0.101 0.899 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.099 0.901 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.146 0.854 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.396 0.604 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.023 0.977 44 H 0.023 0.977 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.759 24.130 9.313 30.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.214 6.214 3 C 0.104 3.896 4 C -0.284 4.284 5 C 0.096 3.904 6 O -0.216 6.216 7 C -0.070 4.070 8 C 0.016 3.984 9 O -0.222 6.222 10 C -0.070 4.070 11 C -0.134 4.134 12 C -0.133 4.133 13 C 0.051 3.949 14 N -0.390 5.390 15 C 0.299 3.701 16 O -0.413 6.413 17 C -0.169 4.169 18 C 0.000 4.000 19 C -0.564 4.564 20 H 0.074 0.926 21 C -0.144 4.144 22 N -0.529 5.529 23 Si 0.720 3.280 24 H -0.207 1.207 25 H -0.213 1.213 26 H -0.199 1.199 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.121 0.879 30 H 0.160 0.840 31 H 0.120 0.880 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.118 0.882 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.163 0.837 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.230 0.770 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.042 0.958 44 H 0.042 0.958 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.174 23.721 10.035 29.894 hybrid contribution -0.498 -0.286 -1.248 1.374 sum -15.671 23.435 8.787 29.530 Atomic orbital electron populations 1.23093 0.78474 1.04373 1.00972 1.86225 1.21162 1.25803 1.88166 1.18467 0.91310 0.83972 0.95841 1.21070 1.00597 0.90917 1.15812 1.17956 0.88191 0.85382 0.98824 1.86196 1.18789 1.28060 1.88518 1.23094 0.78628 1.04022 1.01253 1.18037 0.88868 0.85391 1.06080 1.86160 1.20947 1.25483 1.89636 1.23081 0.78470 1.03997 1.01468 1.20865 1.00257 0.89835 1.02419 1.18991 0.90468 0.95196 1.08677 1.19829 0.98280 0.91038 0.85739 1.46218 1.55852 1.27458 1.09432 1.21526 0.76881 0.79050 0.92681 1.90664 1.44821 1.58817 1.46971 1.21850 1.03011 1.01474 0.90585 1.18893 0.94945 0.89473 0.96726 1.21237 1.32448 1.08664 0.94050 0.92647 1.25029 0.95594 0.96925 0.96888 1.70000 1.33558 1.18202 1.31118 0.86598 0.78336 0.78164 0.84887 1.20701 1.21251 1.19918 0.92850 0.92689 0.87862 0.84011 0.88017 0.92636 0.92702 0.88231 0.92645 0.92519 0.83688 0.91208 0.90603 0.77041 0.90344 0.90381 0.95843 0.95818 0.92994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.30 -3.42 9.72 -19.68 -0.19 -3.61 16 3 C 0.15 1.69 6.66 -39.26 -0.26 1.42 16 4 C -0.26 -2.54 8.02 -39.31 -0.32 -2.86 16 5 C 0.14 1.55 6.70 -39.14 -0.26 1.29 16 6 O -0.30 -3.12 10.28 -34.28 -0.35 -3.47 16 7 C 0.03 0.14 9.81 101.05 0.99 1.14 16 8 C 0.06 0.69 6.70 -39.14 -0.26 0.43 16 9 O -0.31 -3.40 10.28 -34.53 -0.36 -3.76 16 10 C 0.03 0.18 9.81 101.05 0.99 1.17 16 11 C -0.11 -1.21 8.65 -39.48 -0.34 -1.56 16 12 C -0.13 -1.55 5.26 -104.46 -0.55 -2.10 16 13 C 0.17 2.43 5.46 -5.20 -0.03 2.41 16 14 N -0.74 -11.27 5.55 -61.47 -0.34 -11.61 16 15 C 0.51 10.27 7.83 -10.99 -0.09 10.18 16 16 O -0.54 -13.11 15.98 5.55 0.09 -13.02 16 17 C -0.13 -2.72 5.64 -27.89 -0.16 -2.88 16 18 C 0.04 1.02 4.26 -27.89 -0.12 0.90 16 19 C -0.53 -15.18 9.11 -34.44 -0.31 -15.49 16 20 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 21 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 22 N -0.89 -27.80 13.29 55.43 0.74 -27.07 16 23 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 27 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 28 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 29 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.14 0.99 4.53 -52.48 -0.24 0.75 16 31 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.27 7.67 -51.93 -0.40 -0.13 16 33 H 0.05 0.25 7.65 -51.93 -0.40 -0.14 16 34 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 36 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 37 H 0.15 1.30 6.26 -52.49 -0.33 0.97 16 38 H 0.07 0.97 8.00 -51.92 -0.42 0.55 16 39 H 0.08 1.17 7.84 -51.93 -0.41 0.76 16 40 H 0.40 5.16 8.46 -40.82 -0.35 4.82 16 41 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 42 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 43 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 44 H 0.02 0.71 8.10 -51.92 -0.42 0.29 16 45 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 379.16 15.07 5.71 5.71 Total: -1.00 -37.29 379.16 -6.16 -43.45 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -6.62 Total: -0.36 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: 0.18 Total: -3.17 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.40 Total: -38.68 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.81 Total: -23.86 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.29 -6.16 -43.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290937913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.443 kcal (2) G-P(sol) polarization free energy of solvation -37.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds