Wall clock time and date at job start Tue Mar 31 2020 14:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35980 * 117.00112 * 2 1 4 4 C 1.38707 * 119.97879 * 359.97438 * 3 2 1 5 5 C 1.38501 * 119.94774 * 180.02562 * 4 3 2 6 6 O 1.35991 * 120.04441 * 180.27756 * 5 4 3 7 7 C 1.42904 * 117.00146 * 359.72100 * 6 5 4 8 8 C 1.39175 * 119.90949 * 359.97438 * 5 4 3 9 9 O 1.36072 * 120.01708 * 179.97438 * 8 5 4 10 10 C 1.42895 * 117.00318 * 180.02562 * 9 8 5 11 11 C 1.38490 * 119.96565 * 0.02562 * 8 5 4 12 12 C 1.38272 * 120.04925 * 0.02562 * 11 8 5 13 13 C 1.50701 * 119.95539 * 179.97438 * 12 11 8 14 14 N 1.46496 * 109.47107 * 259.99964 * 13 12 11 15 15 C 1.34780 * 120.00157 * 179.97438 * 14 13 12 16 16 O 1.21287 * 119.99541 * 0.02562 * 15 14 13 17 17 C 1.50694 * 120.00506 * 180.02562 * 15 14 13 18 18 C 1.52998 * 109.47569 * 179.97438 * 17 15 14 19 19 C 1.50694 * 109.47375 * 179.97438 * 18 17 15 20 20 H 1.07999 * 120.00031 * 0.02562 * 19 18 17 21 21 C 1.37879 * 120.00069 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00128 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99954 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46755 * 90.00207 * 23 21 19 25 25 H 1.48492 * 109.47122 * 210.00181 * 23 21 19 26 26 H 1.48497 * 109.46960 * 330.00176 * 23 21 19 27 27 H 1.09004 * 109.47234 * 300.00000 * 1 2 3 28 28 H 1.09000 * 109.47453 * 60.00406 * 1 2 3 29 29 H 1.09005 * 109.47234 * 180.02562 * 1 2 3 30 30 H 1.08009 * 120.02760 * 0.02562 * 4 3 2 31 31 H 1.08994 * 109.47533 * 180.02562 * 7 6 5 32 32 H 1.09003 * 109.47085 * 300.00694 * 7 6 5 33 33 H 1.09002 * 109.47177 * 60.00059 * 7 6 5 34 34 H 1.08999 * 109.47434 * 180.02562 * 10 9 8 35 35 H 1.08999 * 109.46936 * 300.00379 * 10 9 8 36 36 H 1.09000 * 109.47117 * 59.99832 * 10 9 8 37 37 H 1.07991 * 119.97255 * 179.97438 * 11 8 5 38 38 H 1.09009 * 109.47069 * 19.99934 * 13 12 11 39 39 H 1.08991 * 109.47369 * 139.99539 * 13 12 11 40 40 H 0.96997 * 120.00265 * 359.97438 * 14 13 12 41 41 H 1.08999 * 109.47118 * 300.00252 * 17 15 14 42 42 H 1.09004 * 109.47278 * 59.99315 * 17 15 14 43 43 H 1.08999 * 109.47177 * 300.00302 * 18 17 15 44 44 H 1.09008 * 109.46949 * 59.99731 * 18 17 15 45 45 H 0.96997 * 120.00218 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2904 2.3746 -0.0005 5 6 1.9199 3.6083 -0.0011 6 8 1.1808 4.7498 0.0041 7 6 -0.2406 4.6024 0.0037 8 6 3.3099 3.6782 -0.0005 9 8 3.9306 4.8891 -0.0016 10 6 5.3596 4.8857 -0.0015 11 6 4.0610 2.5146 0.0000 12 6 3.4309 1.2838 -0.0005 13 6 4.2503 0.0190 -0.0005 14 7 4.3150 -0.5209 -1.3608 15 6 5.0001 -1.6559 -1.6035 16 8 5.5627 -2.2305 -0.6955 17 6 5.0672 -2.2111 -3.0029 18 6 5.9001 -3.4945 -3.0031 19 6 5.9666 -4.0499 -4.4024 20 1 5.4654 -3.5385 -5.2108 21 6 6.6683 -5.2106 -4.6507 22 7 7.2790 -5.8332 -3.6664 23 14 6.7514 -5.8987 -6.3855 24 1 7.9299 -5.3300 -7.0876 25 1 6.8764 -7.3771 -6.3260 26 1 5.5138 -5.5358 -7.1217 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 0.2118 2.3182 -0.0005 31 1 -0.7081 5.5870 0.0077 32 1 -0.5492 4.0576 -0.8885 33 1 -0.5489 4.0499 0.8914 34 1 5.7254 5.9124 -0.0020 35 1 5.7216 4.3717 0.8889 36 1 5.7217 4.3701 -0.8910 37 1 5.1395 2.5687 0.0000 38 1 5.2583 0.2391 0.3514 39 1 3.7870 -0.7141 0.6597 40 1 3.8648 -0.0616 -2.0869 41 1 4.0595 -2.4314 -3.3551 42 1 5.5304 -1.4776 -3.6629 43 1 6.9078 -3.2738 -2.6511 44 1 5.4372 -4.2281 -2.3430 45 1 7.7730 -6.6495 -3.8412 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290937913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:20 Heat of formation + Delta-G solvation = -155.049857 kcal Electronic energy + Delta-G solvation = -27005.530915 eV Core-core repulsion = 22988.287104 eV Total energy + Delta-G solvation = -4017.243811 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.97057 -40.60261 -40.00026 -39.43699 -37.43003 -35.65224 -35.39709 -33.09540 -31.91998 -30.77636 -29.14825 -28.47222 -28.07298 -27.33336 -25.95699 -23.57599 -22.96863 -22.48285 -21.19267 -19.85870 -18.86561 -18.52590 -18.32956 -17.53391 -17.33145 -17.10003 -16.75464 -16.49631 -16.48427 -16.31882 -16.13446 -15.69095 -15.65820 -15.22272 -14.79355 -14.60952 -14.17247 -13.99451 -13.72933 -13.55316 -13.35005 -13.20430 -13.04861 -12.78969 -12.56952 -12.48035 -12.46168 -12.37879 -12.09601 -12.00531 -11.89665 -11.61721 -11.30243 -11.25760 -10.72534 -10.55466 -10.03893 -9.77292 -8.59505 -8.16312 -6.30369 0.04126 0.31234 1.42805 1.45840 1.56748 1.76091 2.21202 2.24808 2.27353 2.42779 2.44427 2.72539 3.16364 3.56409 3.64075 3.85038 4.07147 4.10121 4.25470 4.32812 4.36947 4.37468 4.39641 4.42671 4.43176 4.45293 4.52563 4.58409 4.65917 4.71557 4.74660 4.77511 4.86359 4.94562 5.10818 5.23179 5.43574 5.46431 5.53667 5.65833 5.87559 6.02890 6.19753 6.27850 6.57410 6.64580 6.88059 7.37250 7.40036 8.96397 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.017331 B = 0.002420 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.209575 B =11566.472916 C =12214.094054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.326 6.326 3 C 0.147 3.853 4 C -0.257 4.257 5 C 0.138 3.862 6 O -0.322 6.322 7 C 0.014 3.986 8 C 0.047 3.953 9 O -0.327 6.327 10 C 0.017 3.983 11 C -0.110 4.110 12 C -0.146 4.146 13 C 0.179 3.821 14 N -0.710 5.710 15 C 0.513 3.487 16 O -0.589 6.589 17 C -0.118 4.118 18 C 0.043 3.957 19 C -0.543 4.543 20 H 0.075 0.925 21 C -0.008 4.008 22 N -0.938 5.938 23 Si 0.975 3.025 24 H -0.271 1.271 25 H -0.286 1.286 26 H -0.256 1.256 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.110 0.890 30 H 0.169 0.831 31 H 0.120 0.880 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.118 0.882 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.157 0.843 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.411 0.589 41 H 0.101 0.899 42 H 0.104 0.896 43 H -0.017 1.017 44 H -0.018 1.018 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.700 25.875 7.623 32.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.239 6.239 3 C 0.101 3.899 4 C -0.276 4.276 5 C 0.092 3.908 6 O -0.236 6.236 7 C -0.080 4.080 8 C 0.002 3.998 9 O -0.241 6.241 10 C -0.077 4.077 11 C -0.129 4.129 12 C -0.148 4.148 13 C 0.056 3.944 14 N -0.363 5.363 15 C 0.301 3.699 16 O -0.470 6.470 17 C -0.158 4.158 18 C 0.005 3.995 19 C -0.580 4.580 20 H 0.093 0.907 21 C -0.205 4.205 22 N -0.578 5.578 23 Si 0.798 3.202 24 H -0.197 1.197 25 H -0.212 1.212 26 H -0.179 1.179 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.128 0.872 30 H 0.186 0.814 31 H 0.138 0.862 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.136 0.864 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.174 0.826 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.247 0.753 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.002 0.998 44 H 0.000 1.000 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.170 25.534 8.327 31.876 hybrid contribution 0.017 -0.726 -0.647 0.973 sum -17.153 24.807 7.680 31.123 Atomic orbital electron populations 1.23376 0.76455 1.05479 1.02546 1.86196 1.23434 1.26133 1.88182 1.18562 0.91214 0.84531 0.95640 1.21232 1.01786 0.89795 1.14771 1.18193 0.88417 0.86027 0.98209 1.86178 1.20988 1.28116 1.88307 1.23423 0.76405 1.05745 1.02425 1.18242 0.89448 0.85597 1.06543 1.86136 1.22752 1.25537 1.89702 1.23322 0.76841 1.05499 1.02063 1.20916 1.00871 0.89309 1.01803 1.18789 0.90732 0.94256 1.10975 1.19782 0.98638 0.91748 0.84196 1.45954 1.53878 1.25651 1.10824 1.21310 0.76938 0.79917 0.91725 1.90650 1.47414 1.60720 1.48172 1.21626 1.03167 0.99008 0.92004 1.18682 0.93536 0.91701 0.95559 1.21714 1.32434 1.09060 0.94829 0.90664 1.26150 0.94951 0.97396 1.02022 1.70181 1.34609 1.18840 1.34150 0.85312 0.79228 0.77047 0.78597 1.19670 1.21156 1.17935 0.91183 0.91119 0.87164 0.81410 0.86198 0.91441 0.91430 0.86384 0.91905 0.92028 0.82561 0.91280 0.92264 0.75260 0.88036 0.87814 0.99849 0.99970 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.33 -7.00 9.72 -93.33 -0.91 -7.91 16 3 C 0.15 3.09 6.66 22.48 0.15 3.24 16 4 C -0.26 -4.40 8.02 22.44 0.18 -4.22 16 5 C 0.14 2.79 6.70 22.56 0.15 2.94 16 6 O -0.32 -6.08 10.28 -79.52 -0.82 -6.89 16 7 C 0.01 0.12 9.81 113.37 1.11 1.24 16 8 C 0.05 1.01 6.70 22.56 0.15 1.16 16 9 O -0.33 -6.89 10.28 -80.44 -0.83 -7.72 16 10 C 0.02 0.23 9.81 113.37 1.11 1.34 16 11 C -0.11 -2.23 8.65 22.34 0.19 -2.04 16 12 C -0.15 -3.32 5.26 -19.76 -0.10 -3.42 16 13 C 0.18 5.02 5.46 85.63 0.47 5.49 16 14 N -0.71 -21.36 5.55 -466.79 -2.59 -23.95 16 15 C 0.51 20.88 7.83 87.65 0.69 21.57 16 16 O -0.59 -30.07 15.98 -3.05 -0.05 -30.12 16 17 C -0.12 -4.94 5.64 29.85 0.17 -4.77 16 18 C 0.04 2.45 4.26 29.85 0.13 2.57 16 19 C -0.54 -31.41 9.11 25.60 0.23 -31.18 16 20 H 0.08 3.97 7.74 -2.91 -0.02 3.94 16 21 C -0.01 -0.47 5.46 84.66 0.46 0.00 16 22 N -0.94 -60.27 13.29 21.45 0.28 -59.99 16 23 Si 0.97 44.79 29.54 68.60 2.03 46.81 16 24 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 25 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 26 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 27 H 0.07 0.60 7.66 -2.38 -0.02 0.59 16 28 H 0.07 0.63 7.66 -2.39 -0.02 0.61 16 29 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.17 1.82 4.53 -2.91 -0.01 1.81 16 31 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.07 0.44 7.67 -2.39 -0.02 0.42 16 33 H 0.07 0.43 7.65 -2.39 -0.02 0.41 16 34 H 0.12 1.06 8.14 -2.39 -0.02 1.05 16 35 H 0.06 0.72 7.66 -2.39 -0.02 0.71 16 36 H 0.06 0.74 7.66 -2.39 -0.02 0.72 16 37 H 0.16 2.66 6.26 -2.91 -0.02 2.64 16 38 H 0.07 1.95 8.00 -2.38 -0.02 1.93 16 39 H 0.06 1.88 7.84 -2.39 -0.02 1.86 16 40 H 0.41 10.02 8.46 -92.71 -0.78 9.24 16 41 H 0.10 3.77 8.14 -2.39 -0.02 3.75 16 42 H 0.10 3.80 8.14 -2.39 -0.02 3.78 16 43 H -0.02 -1.09 8.10 -2.39 -0.02 -1.11 16 44 H -0.02 -1.17 8.10 -2.38 -0.02 -1.19 16 45 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -83.99 379.16 3.55 -80.44 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.23 Total: 14.11 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: 6.20 Total: -4.78 kcal Atomic # 7 Polarization: -81.64 SS G_CDS: -2.30 Total: -83.94 kcal Atomic # 8 Polarization: -50.04 SS G_CDS: -2.60 Total: -52.64 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -83.99 3.55 -80.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290937913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.612 kcal (2) G-P(sol) polarization free energy of solvation -83.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds