Wall clock time and date at job start Tue Mar 31 2020 14:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35991 * 117.00364 * 2 1 4 4 C 1.38670 * 120.04381 * 0.02562 * 3 2 1 5 5 C 1.38228 * 120.09051 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.90960 * 179.97438 * 5 4 3 7 7 N 1.46496 * 109.46863 * 90.00351 * 6 5 4 8 8 C 1.34781 * 119.99741 * 179.97438 * 7 6 5 9 9 O 1.21287 * 120.00016 * 359.97438 * 8 7 6 10 10 C 1.50701 * 119.99988 * 179.97438 * 8 7 6 11 11 C 1.52999 * 109.47059 * 179.97438 * 10 8 7 12 12 C 1.50701 * 109.47059 * 179.97438 * 11 10 8 13 13 H 1.08002 * 120.00125 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99983 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99937 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99866 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46989 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.46618 * 120.00360 * 16 14 12 19 19 H 1.48489 * 109.47395 * 240.00357 * 16 14 12 20 20 C 1.38228 * 120.17656 * 0.02562 * 5 4 3 21 21 C 1.38665 * 120.09327 * 359.97438 * 20 5 4 22 22 O 1.35998 * 120.04910 * 180.02562 * 21 20 5 23 23 C 1.42902 * 116.99524 * 0.02562 * 22 21 20 24 24 C 1.38974 * 120.04780 * 179.72805 * 3 2 1 25 25 O 1.36099 * 120.08712 * 359.97438 * 24 3 2 26 26 C 1.42896 * 117.00088 * 90.00136 * 25 24 3 27 27 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46938 * 59.99845 * 1 2 3 29 29 H 1.09004 * 109.46926 * 299.99967 * 1 2 3 30 30 H 1.08003 * 119.95597 * 359.97438 * 4 3 2 31 31 H 1.09007 * 109.46711 * 210.00291 * 6 5 4 32 32 H 1.08999 * 109.47223 * 329.99898 * 6 5 4 33 33 H 0.96997 * 120.00479 * 359.97438 * 7 6 5 34 34 H 1.08994 * 109.47328 * 300.00063 * 10 8 7 35 35 H 1.09003 * 109.46901 * 59.99753 * 10 8 7 36 36 H 1.09003 * 109.47317 * 300.00004 * 11 10 8 37 37 H 1.08999 * 109.47132 * 59.99731 * 11 10 8 38 38 H 0.97001 * 119.99616 * 179.97438 * 15 14 12 39 39 H 1.08005 * 119.95608 * 180.02562 * 20 5 4 40 40 H 1.09000 * 109.47269 * 299.99771 * 23 22 21 41 41 H 1.09003 * 109.47475 * 60.00174 * 23 22 21 42 42 H 1.09005 * 109.46842 * 180.02562 * 23 22 21 43 43 H 1.09005 * 109.47428 * 59.99802 * 26 25 24 44 44 H 1.09000 * 109.47319 * 179.97438 * 26 25 24 45 45 H 1.09002 * 109.47232 * 299.99741 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2922 2.3753 0.0005 5 6 1.9188 3.6074 0.0011 6 6 1.0951 4.8693 0.0011 7 7 0.8278 5.2779 1.3823 8 6 0.1039 6.3878 1.6286 9 8 -0.3259 7.0485 0.7067 10 6 -0.1717 6.8078 3.0494 11 6 -1.0068 8.0898 3.0494 12 6 -1.2828 8.5095 4.4702 13 1 -0.9005 7.9210 5.2911 14 6 -2.0226 9.6454 4.7221 15 7 -2.4877 10.3623 3.7225 16 14 -2.3654 10.1652 6.4833 17 1 -1.7366 9.1963 7.4166 18 1 -1.7994 11.5178 6.7191 19 1 -3.8319 10.1951 6.7141 20 6 3.2989 3.6850 0.0005 21 6 4.0605 2.5262 0.0000 22 8 5.4183 2.6036 0.0000 23 6 5.9934 3.9118 0.0011 24 6 3.4343 1.2855 0.0057 25 8 4.1781 0.1458 0.0118 26 6 4.5381 -0.4008 -1.2584 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 0.2137 2.3188 0.0005 31 1 1.6421 5.6601 -0.5125 32 1 0.1515 4.6873 -0.5132 33 1 1.1717 4.7497 2.1195 34 1 -0.7191 6.0172 3.5624 35 1 0.7719 6.9892 3.5641 36 1 -0.4589 8.8804 2.5365 37 1 -1.9503 7.9088 2.5345 38 1 -3.0085 11.1613 3.8998 39 1 3.7848 4.6496 0.0014 40 1 5.6692 4.4520 -0.8883 41 1 5.6693 4.4505 0.8917 42 1 7.0804 3.8308 0.0006 43 1 5.1257 0.3294 -1.8149 44 1 5.1285 -1.3051 -1.1108 45 1 3.6351 -0.6435 -1.8187 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291024466.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:24 Heat of formation + Delta-G solvation = -129.195917 kcal Electronic energy + Delta-G solvation = -26816.681322 eV Core-core repulsion = 22800.558622 eV Total energy + Delta-G solvation = -4016.122700 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.16807 -39.32959 -39.20954 -38.02803 -37.12174 -34.26078 -33.45432 -31.36684 -30.62439 -30.00698 -28.17773 -27.74159 -27.41660 -25.94528 -24.73078 -22.33926 -22.06886 -21.38464 -19.74771 -18.77773 -17.61205 -17.56538 -16.87423 -16.86330 -16.55523 -15.84430 -15.75011 -15.62168 -15.30118 -15.06435 -15.05495 -14.82161 -14.41661 -14.29863 -13.71949 -13.14189 -13.03535 -12.90756 -12.65968 -12.42164 -12.18637 -12.05650 -11.94715 -11.86231 -11.83688 -11.29464 -11.16160 -10.99569 -10.95074 -10.58381 -10.22664 -9.97235 -9.68335 -9.23309 -9.05743 -8.85732 -8.51957 -8.51809 -8.33071 -5.97044 -4.01290 0.72657 1.01585 2.47408 2.99931 3.21745 3.29372 3.32040 3.39153 3.42487 3.54121 3.78901 4.27378 4.47217 4.55304 4.67789 4.77792 4.78767 4.84096 4.85903 4.86593 5.07781 5.12321 5.13867 5.18672 5.20299 5.38038 5.38274 5.38404 5.42183 5.64679 5.78632 5.81983 6.02017 6.18371 6.22685 6.23645 6.62855 6.70136 6.88138 6.90377 7.39013 7.73882 7.84276 7.85093 8.06168 8.37781 8.73858 9.07470 9.62357 11.13931 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.018109 B = 0.002285 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.805272 B =12248.349650 C =12923.211453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.303 6.303 3 C 0.148 3.852 4 C -0.215 4.215 5 C -0.025 4.025 6 C 0.159 3.841 7 N -0.740 5.740 8 C 0.510 3.490 9 O -0.534 6.534 10 C -0.129 4.129 11 C 0.037 3.963 12 C -0.526 4.526 13 H 0.056 0.944 14 C 0.057 3.943 15 N -0.890 5.890 16 Si 0.893 3.107 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.215 4.215 21 C 0.148 3.852 22 O -0.303 6.303 23 C 0.023 3.977 24 C 0.030 3.970 25 O -0.313 6.313 26 C 0.035 3.965 27 H 0.102 0.898 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.139 0.861 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.399 0.601 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.023 0.977 37 H 0.023 0.977 38 H 0.260 0.740 39 H 0.139 0.861 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.102 0.898 43 H 0.044 0.956 44 H 0.091 0.909 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.553 -22.304 -11.106 28.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.216 6.216 3 C 0.102 3.898 4 C -0.235 4.235 5 C -0.025 4.025 6 C 0.035 3.965 7 N -0.395 5.395 8 C 0.299 3.701 9 O -0.409 6.409 10 C -0.169 4.169 11 C -0.001 4.001 12 C -0.564 4.564 13 H 0.075 0.925 14 C -0.145 4.145 15 N -0.528 5.528 16 Si 0.720 3.280 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.235 4.235 21 C 0.101 3.899 22 O -0.216 6.216 23 C -0.072 4.072 24 C -0.016 4.016 25 O -0.229 6.229 26 C -0.059 4.059 27 H 0.121 0.879 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.156 0.844 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.233 0.767 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.070 0.930 39 H 0.156 0.844 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.121 0.879 43 H 0.062 0.938 44 H 0.110 0.890 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 14.413 -22.087 -11.681 28.845 hybrid contribution -0.355 0.544 0.999 1.191 sum 14.058 -21.544 -10.682 27.854 Atomic orbital electron populations 1.23172 0.77809 1.04280 1.01894 1.86144 1.21644 1.25738 1.88077 1.18932 0.90558 0.85040 0.95313 1.21040 1.00540 0.90872 1.11006 1.19532 0.92935 0.94324 0.95757 1.20119 0.98615 0.92317 0.85447 1.46254 1.57219 1.28869 1.07153 1.21618 0.76240 0.78840 0.93404 1.90677 1.50308 1.53009 1.46906 1.21872 1.02565 1.02558 0.89935 1.18908 0.94791 0.89589 0.96810 1.21262 1.33508 1.09443 0.92235 0.92541 1.25032 0.95855 0.96547 0.97017 1.70009 1.35938 1.16373 1.30524 0.86534 0.77971 0.78482 0.84966 1.19744 1.21021 1.21017 1.21039 0.93871 0.97542 1.11005 1.18936 0.83108 0.92495 0.95317 1.86146 1.16435 1.30941 1.88080 1.23171 0.99309 0.82781 1.01895 1.16991 0.86414 0.84778 1.13375 1.86168 1.69997 1.37831 1.28895 1.22975 0.99460 0.98431 0.85048 0.87921 0.92349 0.92080 0.84361 0.90605 0.90606 0.76695 0.90185 0.90191 0.95814 0.95816 0.93009 0.84362 0.92348 0.92079 0.87923 0.93764 0.89047 0.93762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.15 16 2 O -0.30 -3.18 10.28 -34.30 -0.35 -3.54 16 3 C 0.15 1.66 6.70 -39.15 -0.26 1.39 16 4 C -0.22 -2.19 8.69 -39.43 -0.34 -2.53 16 5 C -0.02 -0.26 5.25 -104.63 -0.55 -0.81 16 6 C 0.16 1.92 5.79 -5.20 -0.03 1.89 16 7 N -0.74 -10.17 5.55 -61.47 -0.34 -10.51 16 8 C 0.51 9.59 7.83 -10.98 -0.09 9.51 16 9 O -0.53 -12.33 15.98 5.55 0.09 -12.24 16 10 C -0.13 -2.59 5.64 -27.88 -0.16 -2.75 16 11 C 0.04 0.98 4.26 -27.88 -0.12 0.86 16 12 C -0.53 -14.88 9.11 -34.44 -0.31 -15.20 16 13 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -27.37 13.29 55.43 0.74 -26.63 16 16 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 17 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 C -0.22 -2.19 8.69 -39.43 -0.34 -2.53 16 21 C 0.15 1.65 6.70 -39.15 -0.26 1.39 16 22 O -0.30 -3.18 10.28 -34.31 -0.35 -3.53 16 23 C 0.02 0.16 9.81 101.05 0.99 1.15 16 24 C 0.03 0.36 5.75 -39.03 -0.22 0.14 16 25 O -0.31 -3.89 9.99 -45.31 -0.45 -4.35 16 26 C 0.04 0.31 11.13 101.05 1.13 1.44 16 27 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.33 7.66 -51.93 -0.40 -0.06 16 29 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 30 H 0.14 1.21 6.29 -52.48 -0.33 0.88 16 31 H 0.08 0.94 8.08 -51.92 -0.42 0.52 16 32 H 0.08 0.94 8.08 -51.93 -0.42 0.52 16 33 H 0.40 4.57 8.46 -40.82 -0.35 4.23 16 34 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 35 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 37 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.14 1.21 6.29 -52.48 -0.33 0.88 16 40 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 41 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 42 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 383.94 15.07 5.79 5.79 Total: -1.00 -36.24 383.94 -6.36 -42.61 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -6.78 Total: -0.87 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: 0.32 Total: -3.34 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.40 Total: -37.14 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -1.07 Total: -23.66 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.24 -6.36 -42.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291024466.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.588 kcal (2) G-P(sol) polarization free energy of solvation -36.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds