Wall clock time and date at job start Tue Mar 31 2020 14:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35991 * 117.00364 * 2 1 4 4 C 1.38670 * 120.04381 * 0.02562 * 3 2 1 5 5 C 1.38228 * 120.09051 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.90960 * 179.97438 * 5 4 3 7 7 N 1.46496 * 109.46863 * 90.00351 * 6 5 4 8 8 C 1.34781 * 119.99741 * 179.97438 * 7 6 5 9 9 O 1.21287 * 120.00016 * 359.97438 * 8 7 6 10 10 C 1.50701 * 119.99988 * 179.97438 * 8 7 6 11 11 C 1.52999 * 109.47059 * 179.97438 * 10 8 7 12 12 C 1.50701 * 109.47059 * 179.97438 * 11 10 8 13 13 H 1.08002 * 120.00125 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99983 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99937 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99866 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46989 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.46618 * 120.00360 * 16 14 12 19 19 H 1.48489 * 109.47395 * 240.00357 * 16 14 12 20 20 C 1.38228 * 120.17656 * 0.02562 * 5 4 3 21 21 C 1.38665 * 120.09327 * 359.97438 * 20 5 4 22 22 O 1.35998 * 120.04910 * 180.02562 * 21 20 5 23 23 C 1.42902 * 116.99524 * 0.02562 * 22 21 20 24 24 C 1.38974 * 120.04780 * 179.72805 * 3 2 1 25 25 O 1.36099 * 120.08712 * 359.97438 * 24 3 2 26 26 C 1.42896 * 117.00088 * 90.00136 * 25 24 3 27 27 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46938 * 59.99845 * 1 2 3 29 29 H 1.09004 * 109.46926 * 299.99967 * 1 2 3 30 30 H 1.08003 * 119.95597 * 359.97438 * 4 3 2 31 31 H 1.09007 * 109.46711 * 210.00291 * 6 5 4 32 32 H 1.08999 * 109.47223 * 329.99898 * 6 5 4 33 33 H 0.96997 * 120.00479 * 359.97438 * 7 6 5 34 34 H 1.08994 * 109.47328 * 300.00063 * 10 8 7 35 35 H 1.09003 * 109.46901 * 59.99753 * 10 8 7 36 36 H 1.09003 * 109.47317 * 300.00004 * 11 10 8 37 37 H 1.08999 * 109.47132 * 59.99731 * 11 10 8 38 38 H 0.97001 * 119.99616 * 179.97438 * 15 14 12 39 39 H 1.08005 * 119.95608 * 180.02562 * 20 5 4 40 40 H 1.09000 * 109.47269 * 299.99771 * 23 22 21 41 41 H 1.09003 * 109.47475 * 60.00174 * 23 22 21 42 42 H 1.09005 * 109.46842 * 180.02562 * 23 22 21 43 43 H 1.09005 * 109.47428 * 59.99802 * 26 25 24 44 44 H 1.09000 * 109.47319 * 179.97438 * 26 25 24 45 45 H 1.09002 * 109.47232 * 299.99741 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2922 2.3753 0.0005 5 6 1.9188 3.6074 0.0011 6 6 1.0951 4.8693 0.0011 7 7 0.8278 5.2779 1.3823 8 6 0.1039 6.3878 1.6286 9 8 -0.3259 7.0485 0.7067 10 6 -0.1717 6.8078 3.0494 11 6 -1.0068 8.0898 3.0494 12 6 -1.2828 8.5095 4.4702 13 1 -0.9005 7.9210 5.2911 14 6 -2.0226 9.6454 4.7221 15 7 -2.4877 10.3623 3.7225 16 14 -2.3654 10.1652 6.4833 17 1 -1.7366 9.1963 7.4166 18 1 -1.7994 11.5178 6.7191 19 1 -3.8319 10.1951 6.7141 20 6 3.2989 3.6850 0.0005 21 6 4.0605 2.5262 0.0000 22 8 5.4183 2.6036 0.0000 23 6 5.9934 3.9118 0.0011 24 6 3.4343 1.2855 0.0057 25 8 4.1781 0.1458 0.0118 26 6 4.5381 -0.4008 -1.2584 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 0.2137 2.3188 0.0005 31 1 1.6421 5.6601 -0.5125 32 1 0.1515 4.6873 -0.5132 33 1 1.1717 4.7497 2.1195 34 1 -0.7191 6.0172 3.5624 35 1 0.7719 6.9892 3.5641 36 1 -0.4589 8.8804 2.5365 37 1 -1.9503 7.9088 2.5345 38 1 -3.0085 11.1613 3.8998 39 1 3.7848 4.6496 0.0014 40 1 5.6692 4.4520 -0.8883 41 1 5.6693 4.4505 0.8917 42 1 7.0804 3.8308 0.0006 43 1 5.1257 0.3294 -1.8149 44 1 5.1285 -1.3051 -1.1108 45 1 3.6351 -0.6435 -1.8187 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291024466.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:23 Heat of formation + Delta-G solvation = -154.593608 kcal Electronic energy + Delta-G solvation = -26817.782648 eV Core-core repulsion = 22800.558622 eV Total energy + Delta-G solvation = -4017.224027 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.95443 -40.65320 -40.03987 -38.83644 -38.01968 -35.63133 -35.36959 -33.08198 -31.81758 -30.76342 -28.80385 -28.76535 -28.04437 -27.46928 -25.91579 -23.59735 -23.07169 -22.58098 -21.24072 -19.61664 -18.82490 -18.34607 -18.34066 -17.59849 -17.43120 -17.28938 -16.92315 -16.52954 -16.48376 -16.38724 -16.02946 -15.77103 -15.52335 -15.18201 -14.85145 -14.65219 -14.18790 -14.10426 -13.60694 -13.53481 -13.36227 -13.20506 -13.01896 -12.82520 -12.73631 -12.50913 -12.44563 -12.44497 -12.02347 -11.90783 -11.73822 -11.62444 -11.27040 -11.01268 -10.75748 -10.56854 -10.11601 -9.36419 -9.28372 -8.17258 -6.30737 -0.10937 0.22960 1.43093 1.44049 1.57395 1.71884 1.80288 2.09729 2.41947 2.55913 2.64246 2.86211 3.15952 3.39987 3.80504 3.90927 4.05003 4.08442 4.27379 4.28181 4.30393 4.37718 4.38093 4.47026 4.47187 4.49735 4.51509 4.59045 4.67400 4.73638 4.73671 4.76645 4.84426 5.04485 5.10266 5.26625 5.35937 5.40222 5.52658 5.65651 5.87272 5.98175 6.19269 6.21194 6.57664 6.61767 6.88106 7.32680 7.39513 8.95497 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.018109 B = 0.002285 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.805272 B =12248.349650 C =12923.211453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.319 6.319 3 C 0.142 3.858 4 C -0.211 4.211 5 C -0.025 4.025 6 C 0.162 3.838 7 N -0.715 5.715 8 C 0.515 3.485 9 O -0.585 6.585 10 C -0.120 4.120 11 C 0.041 3.959 12 C -0.541 4.541 13 H 0.075 0.925 14 C -0.007 4.007 15 N -0.937 5.937 16 Si 0.972 3.028 17 H -0.254 1.254 18 H -0.281 1.281 19 H -0.281 1.281 20 C -0.211 4.211 21 C 0.142 3.858 22 O -0.319 6.319 23 C 0.015 3.985 24 C 0.012 3.988 25 O -0.335 6.335 26 C 0.033 3.967 27 H 0.122 0.878 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.152 0.848 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.415 0.585 34 H 0.104 0.896 35 H 0.104 0.896 36 H -0.016 1.016 37 H -0.016 1.016 38 H 0.262 0.738 39 H 0.152 0.848 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.122 0.878 43 H 0.046 0.954 44 H 0.110 0.890 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.424 -23.646 -9.749 29.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.233 6.233 3 C 0.095 3.905 4 C -0.230 4.230 5 C -0.025 4.025 6 C 0.039 3.961 7 N -0.369 5.369 8 C 0.304 3.696 9 O -0.465 6.465 10 C -0.159 4.159 11 C 0.004 3.996 12 C -0.579 4.579 13 H 0.093 0.907 14 C -0.205 4.205 15 N -0.577 5.577 16 Si 0.796 3.204 17 H -0.177 1.177 18 H -0.207 1.207 19 H -0.207 1.207 20 C -0.230 4.230 21 C 0.095 3.905 22 O -0.233 6.233 23 C -0.079 4.079 24 C -0.034 4.034 25 O -0.252 6.252 26 C -0.061 4.061 27 H 0.140 0.860 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.170 0.830 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.251 0.749 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.002 0.998 37 H 0.002 0.998 38 H 0.071 0.929 39 H 0.170 0.830 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.140 0.860 43 H 0.064 0.936 44 H 0.128 0.872 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 15.325 -23.494 -10.309 29.885 hybrid contribution -0.570 0.876 0.501 1.159 sum 14.756 -22.618 -9.808 28.732 Atomic orbital electron populations 1.23437 0.76015 1.05886 1.02539 1.86128 1.23538 1.25592 1.87997 1.19000 0.90492 0.85572 0.95442 1.21146 1.01192 0.90395 1.10256 1.19326 0.92854 0.93569 0.96799 1.20147 0.98928 0.93030 0.84020 1.45933 1.55103 1.27054 1.08760 1.21290 0.76458 0.79643 0.92242 1.90668 1.52790 1.55054 1.47977 1.21641 1.02771 0.99919 0.91618 1.18699 0.93556 0.91835 0.95533 1.21749 1.33220 1.09721 0.93208 0.90686 1.26122 0.95585 0.96684 1.02096 1.70179 1.36982 1.17077 1.33489 0.85291 0.77850 0.78281 0.78928 1.17697 1.20665 1.20659 1.21144 0.93679 0.97910 1.10257 1.19003 0.83621 0.92447 0.95446 1.86130 1.16090 1.33032 1.88000 1.23437 1.00360 0.81544 1.02539 1.17326 0.87030 0.85120 1.13902 1.86109 1.70241 1.38176 1.30683 1.23125 0.99843 0.99088 0.84045 0.85979 0.91396 0.91661 0.83019 0.90672 0.90669 0.74872 0.87782 0.87790 0.99801 0.99804 0.92882 0.83023 0.91396 0.91662 0.85980 0.93556 0.87169 0.93551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.32 -6.35 10.28 -79.51 -0.82 -7.17 16 3 C 0.14 3.02 6.70 22.55 0.15 3.17 16 4 C -0.21 -3.94 8.69 22.37 0.19 -3.74 16 5 C -0.02 -0.48 5.25 -19.87 -0.10 -0.58 16 6 C 0.16 3.68 5.79 85.63 0.50 4.18 16 7 N -0.71 -18.33 5.55 -466.77 -2.59 -20.92 16 8 C 0.52 19.07 7.83 87.66 0.69 19.76 16 9 O -0.59 -27.66 15.98 -3.05 -0.05 -27.71 16 10 C -0.12 -4.68 5.64 29.85 0.17 -4.51 16 11 C 0.04 2.28 4.26 29.85 0.13 2.40 16 12 C -0.54 -30.55 9.11 25.60 0.23 -30.32 16 13 H 0.08 3.87 7.74 -2.91 -0.02 3.84 16 14 C -0.01 -0.43 5.46 84.66 0.46 0.03 16 15 N -0.94 -59.13 13.29 21.45 0.28 -58.84 16 16 Si 0.97 44.11 29.54 68.60 2.03 46.14 16 17 H -0.25 -10.62 7.11 99.48 0.71 -9.91 16 18 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 19 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 20 C -0.21 -3.94 8.69 22.37 0.19 -3.74 16 21 C 0.14 3.01 6.70 22.55 0.15 3.17 16 22 O -0.32 -6.35 10.28 -79.58 -0.82 -7.17 16 23 C 0.02 0.18 9.81 113.37 1.11 1.29 16 24 C 0.01 0.27 5.75 22.62 0.13 0.40 16 25 O -0.34 -8.19 9.99 -70.52 -0.70 -8.90 16 26 C 0.03 0.56 11.13 113.37 1.26 1.82 16 27 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.07 0.66 7.66 -2.39 -0.02 0.64 16 29 H 0.06 0.71 7.66 -2.38 -0.02 0.69 16 30 H 0.15 2.35 6.29 -2.91 -0.02 2.33 16 31 H 0.08 1.78 8.08 -2.38 -0.02 1.76 16 32 H 0.08 1.78 8.08 -2.39 -0.02 1.76 16 33 H 0.41 8.33 8.46 -92.71 -0.78 7.54 16 34 H 0.10 3.57 8.14 -2.39 -0.02 3.55 16 35 H 0.10 3.56 8.14 -2.39 -0.02 3.55 16 36 H -0.02 -1.02 8.10 -2.39 -0.02 -1.04 16 37 H -0.02 -1.02 8.10 -2.39 -0.02 -1.04 16 38 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 39 H 0.15 2.35 6.29 -2.91 -0.02 2.33 16 40 H 0.07 0.66 7.66 -2.39 -0.02 0.64 16 41 H 0.06 0.71 7.66 -2.39 -0.02 0.69 16 42 H 0.12 0.91 8.14 -2.38 -0.02 0.89 16 43 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 44 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -80.89 383.94 3.93 -76.96 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 0.22 Total: 13.01 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: 6.38 Total: -5.39 kcal Atomic # 7 Polarization: -77.46 SS G_CDS: -2.30 Total: -79.77 kcal Atomic # 8 Polarization: -48.56 SS G_CDS: -2.39 Total: -50.95 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -80.89 3.93 -76.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291024466.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.635 kcal (2) G-P(sol) polarization free energy of solvation -80.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds