Wall clock time and date at job start Tue Mar 31 2020 14:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35888 * 117.00239 * 2 1 4 4 C 1.38674 * 119.99719 * 0.02562 * 3 2 1 5 5 C 1.38680 * 120.00103 * 180.02562 * 4 3 2 6 6 O 1.35894 * 120.00444 * 179.97438 * 5 4 3 7 7 C 1.42901 * 116.99621 * 359.88293 * 6 5 4 8 8 C 1.38678 * 119.99660 * 359.86646 * 5 4 3 9 9 C 1.38675 * 120.00192 * 0.09538 * 8 5 4 10 10 O 1.35893 * 119.99942 * 179.97438 * 9 8 5 11 11 C 1.42903 * 117.00043 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.46963 * 179.97438 * 11 10 9 13 13 N 1.46496 * 109.47164 * 65.00393 * 12 11 10 14 14 C 1.34784 * 119.99806 * 179.97438 * 13 12 11 15 15 O 1.21274 * 119.99847 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99543 * 179.97438 * 14 13 12 17 17 C 1.52997 * 109.46902 * 180.02562 * 16 14 13 18 18 C 1.50706 * 109.47209 * 179.97438 * 17 16 14 19 19 H 1.07998 * 119.99782 * 0.02562 * 18 17 16 20 20 C 1.37875 * 119.99870 * 179.97438 * 18 17 16 21 21 N 1.31517 * 120.00068 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99880 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47050 * 60.00270 * 22 20 18 24 24 H 1.48494 * 109.47026 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.46907 * 300.00170 * 22 20 18 26 26 C 1.38673 * 119.99783 * 359.97438 * 9 8 5 27 27 H 1.09000 * 109.47363 * 300.00658 * 1 2 3 28 28 H 1.08997 * 109.47137 * 60.00556 * 1 2 3 29 29 H 1.09003 * 109.46892 * 180.02562 * 1 2 3 30 30 H 1.07997 * 120.00286 * 359.97438 * 4 3 2 31 31 H 1.09006 * 109.47127 * 60.00846 * 7 6 5 32 32 H 1.09005 * 109.47350 * 180.02562 * 7 6 5 33 33 H 1.09001 * 109.47612 * 300.00770 * 7 6 5 34 34 H 1.08009 * 119.99644 * 180.36251 * 8 5 4 35 35 H 1.08997 * 109.46689 * 300.00400 * 11 10 9 36 36 H 1.09006 * 109.46693 * 60.00167 * 11 10 9 37 37 H 1.09001 * 109.46572 * 185.00343 * 12 11 10 38 38 H 1.09005 * 109.47435 * 304.99814 * 12 11 10 39 39 H 0.96999 * 119.99783 * 359.97438 * 13 12 11 40 40 H 1.09000 * 109.47055 * 299.99405 * 16 14 13 41 41 H 1.08998 * 109.47172 * 59.99791 * 16 14 13 42 42 H 1.08999 * 109.47106 * 299.99466 * 17 16 14 43 43 H 1.08998 * 109.47576 * 59.99795 * 17 16 14 44 44 H 0.97005 * 119.99667 * 180.02562 * 21 20 18 45 45 H 1.08001 * 119.99546 * 179.97438 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2107 0.0000 4 6 1.2906 2.3738 0.0005 5 6 1.9202 3.6094 0.0000 6 8 1.1801 4.7492 0.0000 7 6 -0.2410 4.5998 -0.0020 8 6 3.3051 3.6820 0.0017 9 6 4.0604 2.5189 0.0020 10 8 5.4174 2.5901 0.0032 11 6 6.1320 1.3525 0.0039 12 6 7.6362 1.6321 0.0045 13 7 8.0090 2.2956 1.2563 14 6 9.2928 2.6397 1.4802 15 8 10.1393 2.3997 0.6456 16 6 9.6762 3.3228 2.7677 17 6 11.1804 3.6023 2.7683 18 6 11.5638 4.2860 4.0555 19 1 10.8099 4.4993 4.7989 20 6 12.8770 4.6381 4.2845 21 7 13.7950 4.3778 3.3794 22 14 13.3520 5.4861 5.8797 23 1 13.0106 4.6082 7.0277 24 1 14.8120 5.7573 5.8804 25 1 12.6110 6.7674 5.9988 26 6 3.4308 1.2834 0.0011 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.2122 2.3173 0.0005 31 1 -0.5499 4.0501 0.8872 32 1 -0.7099 5.5838 -0.0023 33 1 -0.5476 4.0514 -0.8928 34 1 3.7954 4.6443 0.0072 35 1 5.8678 0.7811 0.8937 36 1 5.8694 0.7809 -0.8863 37 1 8.1805 0.6920 -0.0845 38 1 7.8861 2.2778 -0.8374 39 1 7.3320 2.4873 1.9240 40 1 9.1323 4.2633 2.8559 41 1 9.4257 2.6777 3.6098 42 1 11.7247 2.6621 2.6798 43 1 11.4305 4.2476 1.9262 44 1 14.7190 4.6252 3.5407 45 1 4.0190 0.3776 0.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291055619.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:06 Heat of formation + Delta-G solvation = -132.057278 kcal Electronic energy + Delta-G solvation = -26007.472256 eV Core-core repulsion = 21991.225478 eV Total energy + Delta-G solvation = -4016.246778 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.12311 -39.67074 -39.26331 -38.87505 -36.18168 -34.48545 -33.39247 -31.22844 -30.83101 -30.17741 -29.21981 -28.22421 -27.10877 -25.67700 -23.69729 -22.60214 -21.95681 -21.26156 -19.67842 -19.56849 -17.55575 -17.02788 -16.93258 -16.65219 -16.47337 -16.38866 -16.16701 -15.94435 -15.53445 -15.21090 -15.12896 -14.96060 -14.43673 -14.33463 -13.51439 -13.17331 -12.99205 -12.93686 -12.86033 -12.59277 -12.17847 -12.07219 -12.01054 -11.92552 -11.79832 -11.63370 -11.31751 -11.10955 -10.87063 -10.58068 -10.43266 -9.89719 -9.61910 -9.14318 -8.97528 -8.76956 -8.60361 -8.45723 -8.27292 -5.91636 -3.95849 1.01197 1.07004 2.41760 2.77232 3.18761 3.31896 3.34059 3.37939 3.42121 3.43880 3.57653 4.40833 4.50125 4.51474 4.54472 4.55716 4.63208 4.66925 4.71311 4.78051 4.81550 4.84258 4.95786 4.99648 5.00864 5.16239 5.43055 5.44088 5.56131 5.75259 5.83742 5.86465 5.88784 6.07263 6.29221 6.31541 6.68836 6.71614 6.94589 6.95438 7.11779 7.78908 7.91776 7.92498 8.12168 8.43627 8.82521 9.12647 9.67321 11.19265 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.018282 B = 0.001923 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.209511 B =14556.486540 C =15369.658266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.312 6.312 3 C 0.202 3.798 4 C -0.334 4.334 5 C 0.202 3.798 6 O -0.309 6.309 7 C 0.027 3.973 8 C -0.220 4.220 9 C 0.210 3.790 10 O -0.299 6.299 11 C 0.047 3.953 12 C 0.122 3.878 13 N -0.742 5.742 14 C 0.511 3.489 15 O -0.536 6.536 16 C -0.130 4.130 17 C 0.037 3.963 18 C -0.527 4.527 19 H 0.055 0.945 20 C 0.057 3.943 21 N -0.890 5.890 22 Si 0.894 3.106 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 C -0.278 4.278 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.102 0.898 30 H 0.134 0.866 31 H 0.056 0.944 32 H 0.103 0.897 33 H 0.056 0.944 34 H 0.143 0.857 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.400 0.600 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.023 0.977 43 H 0.024 0.976 44 H 0.261 0.739 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.107 -7.462 -8.583 35.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.156 3.844 4 C -0.354 4.354 5 C 0.156 3.844 6 O -0.222 6.222 7 C -0.068 4.068 8 C -0.239 4.239 9 C 0.163 3.837 10 O -0.212 6.212 11 C -0.029 4.029 12 C -0.002 4.002 13 N -0.397 5.397 14 C 0.299 3.701 15 O -0.412 6.412 16 C -0.170 4.170 17 C -0.001 4.001 18 C -0.565 4.565 19 H 0.074 0.926 20 C -0.144 4.144 21 N -0.529 5.529 22 Si 0.721 3.279 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 C -0.297 4.297 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.120 0.880 30 H 0.152 0.848 31 H 0.075 0.925 32 H 0.121 0.879 33 H 0.074 0.926 34 H 0.160 0.840 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.095 0.905 39 H 0.234 0.766 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.042 0.958 43 H 0.042 0.958 44 H 0.071 0.929 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -33.003 -7.452 -9.247 35.075 hybrid contribution -0.691 0.247 1.136 1.352 sum -33.694 -7.205 -8.111 35.398 Atomic orbital electron populations 1.23092 0.78117 1.04161 1.01443 1.86087 1.21635 1.26758 1.88035 1.18306 0.91292 0.83592 0.91253 1.21115 1.00472 0.91806 1.21985 1.18215 0.90262 0.84485 0.91480 1.86105 1.19250 1.28843 1.87989 1.23101 0.78194 1.04112 1.01373 1.19364 0.90001 0.98361 1.16221 1.18129 0.82601 0.92048 0.90940 1.86184 1.14509 1.32959 1.87552 1.23246 0.91672 0.85078 1.02866 1.21304 0.90494 0.99316 0.89096 1.46160 1.10268 1.63308 1.20013 1.21562 0.80856 0.77686 0.89969 1.90667 1.49439 1.53795 1.47259 1.21862 1.03287 0.99585 0.92266 1.18897 0.86404 0.97683 0.97082 1.21199 0.93476 1.39001 1.02851 0.92647 1.25031 0.96681 0.96028 0.96701 1.69994 1.01594 1.47149 1.34137 0.86645 0.77322 0.80024 0.83884 1.20279 1.21321 1.20256 1.20311 0.92509 0.97764 1.19136 0.92516 0.92553 0.87972 0.84785 0.92534 0.87896 0.92585 0.83954 0.90767 0.90094 0.89418 0.90521 0.76593 0.90160 0.90261 0.95839 0.95805 0.92932 0.84332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.81 101.05 0.99 1.11 16 2 O -0.31 -2.68 10.49 -19.39 -0.20 -2.88 16 3 C 0.20 1.92 6.68 -39.26 -0.26 1.66 16 4 C -0.33 -2.88 8.02 -39.26 -0.31 -3.19 16 5 C 0.20 2.01 6.68 -39.26 -0.26 1.75 16 6 O -0.31 -2.83 10.49 -19.41 -0.20 -3.03 16 7 C 0.03 0.13 9.81 101.05 0.99 1.12 16 8 C -0.22 -2.42 9.92 -39.26 -0.39 -2.81 16 9 C 0.21 2.27 6.68 -39.26 -0.26 2.01 16 10 O -0.30 -3.34 10.08 -19.40 -0.20 -3.54 16 11 C 0.05 0.42 4.87 37.16 0.18 0.60 16 12 C 0.12 1.46 6.06 -4.05 -0.02 1.43 16 13 N -0.74 -10.66 5.50 -60.29 -0.33 -10.99 16 14 C 0.51 10.04 7.83 -10.98 -0.09 9.95 16 15 O -0.54 -12.83 15.98 5.56 0.09 -12.74 16 16 C -0.13 -2.71 5.64 -27.88 -0.16 -2.87 16 17 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 18 C -0.53 -15.22 9.11 -34.44 -0.31 -15.53 16 19 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 20 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 21 N -0.89 -27.81 13.29 55.43 0.74 -27.07 16 22 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 C -0.28 -2.75 8.97 -39.26 -0.35 -3.10 16 27 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 28 H 0.06 0.20 7.66 -51.93 -0.40 -0.20 16 29 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.13 0.81 4.52 -52.49 -0.24 0.57 16 31 H 0.06 0.22 7.65 -51.93 -0.40 -0.18 16 32 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 34 H 0.14 1.55 8.06 -52.48 -0.42 1.13 16 35 H 0.07 0.57 7.66 -51.93 -0.40 0.17 16 36 H 0.08 0.58 7.66 -51.93 -0.40 0.18 16 37 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.40 4.79 8.47 -40.82 -0.35 4.45 16 40 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 41 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 42 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 43 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 44 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 45 H 0.14 1.18 6.29 -52.49 -0.33 0.85 16 LS Contribution 380.90 15.07 5.74 5.74 Total: -1.00 -36.87 380.90 -6.51 -43.38 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -6.64 Total: -0.44 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -0.48 Total: -5.38 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.40 Total: -38.07 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.51 Total: -22.20 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.87 -6.51 -43.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291055619.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.681 kcal (2) G-P(sol) polarization free energy of solvation -36.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds