Wall clock time and date at job start Tue Mar 31 2020 14:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35888 * 117.00239 * 2 1 4 4 C 1.38674 * 119.99719 * 0.02562 * 3 2 1 5 5 C 1.38680 * 120.00103 * 180.02562 * 4 3 2 6 6 O 1.35894 * 120.00444 * 179.97438 * 5 4 3 7 7 C 1.42901 * 116.99621 * 359.88293 * 6 5 4 8 8 C 1.38678 * 119.99660 * 359.86646 * 5 4 3 9 9 C 1.38675 * 120.00192 * 0.09538 * 8 5 4 10 10 O 1.35893 * 119.99942 * 179.97438 * 9 8 5 11 11 C 1.42903 * 117.00043 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.46963 * 179.97438 * 11 10 9 13 13 N 1.46496 * 109.47164 * 65.00393 * 12 11 10 14 14 C 1.34784 * 119.99806 * 179.97438 * 13 12 11 15 15 O 1.21274 * 119.99847 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99543 * 179.97438 * 14 13 12 17 17 C 1.52997 * 109.46902 * 180.02562 * 16 14 13 18 18 C 1.50706 * 109.47209 * 179.97438 * 17 16 14 19 19 H 1.07998 * 119.99782 * 0.02562 * 18 17 16 20 20 C 1.37875 * 119.99870 * 179.97438 * 18 17 16 21 21 N 1.31517 * 120.00068 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99880 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47050 * 60.00270 * 22 20 18 24 24 H 1.48494 * 109.47026 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.46907 * 300.00170 * 22 20 18 26 26 C 1.38673 * 119.99783 * 359.97438 * 9 8 5 27 27 H 1.09000 * 109.47363 * 300.00658 * 1 2 3 28 28 H 1.08997 * 109.47137 * 60.00556 * 1 2 3 29 29 H 1.09003 * 109.46892 * 180.02562 * 1 2 3 30 30 H 1.07997 * 120.00286 * 359.97438 * 4 3 2 31 31 H 1.09006 * 109.47127 * 60.00846 * 7 6 5 32 32 H 1.09005 * 109.47350 * 180.02562 * 7 6 5 33 33 H 1.09001 * 109.47612 * 300.00770 * 7 6 5 34 34 H 1.08009 * 119.99644 * 180.36251 * 8 5 4 35 35 H 1.08997 * 109.46689 * 300.00400 * 11 10 9 36 36 H 1.09006 * 109.46693 * 60.00167 * 11 10 9 37 37 H 1.09001 * 109.46572 * 185.00343 * 12 11 10 38 38 H 1.09005 * 109.47435 * 304.99814 * 12 11 10 39 39 H 0.96999 * 119.99783 * 359.97438 * 13 12 11 40 40 H 1.09000 * 109.47055 * 299.99405 * 16 14 13 41 41 H 1.08998 * 109.47172 * 59.99791 * 16 14 13 42 42 H 1.08999 * 109.47106 * 299.99466 * 17 16 14 43 43 H 1.08998 * 109.47576 * 59.99795 * 17 16 14 44 44 H 0.97005 * 119.99667 * 180.02562 * 21 20 18 45 45 H 1.08001 * 119.99546 * 179.97438 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2107 0.0000 4 6 1.2906 2.3738 0.0005 5 6 1.9202 3.6094 0.0000 6 8 1.1801 4.7492 0.0000 7 6 -0.2410 4.5998 -0.0020 8 6 3.3051 3.6820 0.0017 9 6 4.0604 2.5189 0.0020 10 8 5.4174 2.5901 0.0032 11 6 6.1320 1.3525 0.0039 12 6 7.6362 1.6321 0.0045 13 7 8.0090 2.2956 1.2563 14 6 9.2928 2.6397 1.4802 15 8 10.1393 2.3997 0.6456 16 6 9.6762 3.3228 2.7677 17 6 11.1804 3.6023 2.7683 18 6 11.5638 4.2860 4.0555 19 1 10.8099 4.4993 4.7989 20 6 12.8770 4.6381 4.2845 21 7 13.7950 4.3778 3.3794 22 14 13.3520 5.4861 5.8797 23 1 13.0106 4.6082 7.0277 24 1 14.8120 5.7573 5.8804 25 1 12.6110 6.7674 5.9988 26 6 3.4308 1.2834 0.0011 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.2122 2.3173 0.0005 31 1 -0.5499 4.0501 0.8872 32 1 -0.7099 5.5838 -0.0023 33 1 -0.5476 4.0514 -0.8928 34 1 3.7954 4.6443 0.0072 35 1 5.8678 0.7811 0.8937 36 1 5.8694 0.7809 -0.8863 37 1 8.1805 0.6920 -0.0845 38 1 7.8861 2.2778 -0.8374 39 1 7.3320 2.4873 1.9240 40 1 9.1323 4.2633 2.8559 41 1 9.4257 2.6777 3.6098 42 1 11.7247 2.6621 2.6798 43 1 11.4305 4.2476 1.9262 44 1 14.7190 4.6252 3.5407 45 1 4.0190 0.3776 0.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291055619.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:05 Heat of formation + Delta-G solvation = -159.259033 kcal Electronic energy + Delta-G solvation = -26008.651813 eV Core-core repulsion = 21991.225478 eV Total energy + Delta-G solvation = -4017.426335 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.79453 -40.76424 -40.06504 -39.83525 -36.94853 -35.76867 -35.47073 -33.08148 -31.63225 -31.07225 -30.10832 -28.69274 -27.74108 -27.42204 -24.78130 -23.53337 -23.17818 -22.36000 -21.24162 -20.23572 -18.83305 -18.19510 -17.69938 -17.58092 -17.48911 -17.11795 -17.01564 -16.79694 -16.53755 -16.46580 -16.42520 -16.08202 -15.67330 -15.24580 -14.79248 -14.60233 -14.16925 -13.88859 -13.58676 -13.52535 -13.32847 -13.32118 -13.21032 -12.76457 -12.65279 -12.49618 -12.48015 -12.32734 -12.27774 -12.03259 -11.89431 -11.62548 -11.31094 -11.05474 -10.72140 -10.54982 -10.08390 -9.29763 -9.15645 -8.16589 -6.30695 0.31057 0.35528 1.42667 1.47552 1.55204 1.71497 1.77178 2.24805 2.27408 2.46085 2.57236 2.63233 3.15948 3.69542 3.88734 3.95337 4.02441 4.05804 4.08415 4.12224 4.30570 4.31889 4.36003 4.37265 4.38243 4.48653 4.51590 4.54474 4.60139 4.71915 4.73722 4.80354 4.98256 5.10300 5.16816 5.18190 5.36624 5.44397 5.52501 5.65124 5.86872 6.12735 6.19249 6.26542 6.46733 6.59570 6.87417 7.34678 7.39416 8.95808 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.018282 B = 0.001923 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.209511 B =14556.486540 C =15369.658266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.326 6.326 3 C 0.197 3.803 4 C -0.329 4.329 5 C 0.197 3.803 6 O -0.329 6.329 7 C 0.016 3.984 8 C -0.245 4.245 9 C 0.202 3.798 10 O -0.318 6.318 11 C 0.053 3.947 12 C 0.119 3.881 13 N -0.718 5.718 14 C 0.512 3.488 15 O -0.589 6.589 16 C -0.121 4.121 17 C 0.042 3.958 18 C -0.545 4.545 19 H 0.075 0.925 20 C -0.008 4.008 21 N -0.937 5.937 22 Si 0.975 3.025 23 H -0.262 1.262 24 H -0.287 1.287 25 H -0.263 1.263 26 C -0.285 4.285 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.121 0.879 30 H 0.160 0.840 31 H 0.068 0.932 32 H 0.120 0.880 33 H 0.068 0.932 34 H 0.132 0.868 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.062 0.938 39 H 0.415 0.585 40 H 0.101 0.899 41 H 0.105 0.895 42 H -0.016 1.016 43 H -0.019 1.019 44 H 0.263 0.737 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -37.294 -7.920 -7.120 38.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.239 6.239 3 C 0.150 3.850 4 C -0.349 4.349 5 C 0.150 3.850 6 O -0.242 6.242 7 C -0.078 4.078 8 C -0.264 4.264 9 C 0.156 3.844 10 O -0.231 6.231 11 C -0.021 4.021 12 C -0.005 4.005 13 N -0.372 5.372 14 C 0.301 3.699 15 O -0.469 6.469 16 C -0.160 4.160 17 C 0.004 3.996 18 C -0.582 4.582 19 H 0.093 0.907 20 C -0.206 4.206 21 N -0.577 5.577 22 Si 0.799 3.201 23 H -0.186 1.186 24 H -0.213 1.213 25 H -0.188 1.188 26 C -0.305 4.305 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.139 0.861 30 H 0.177 0.823 31 H 0.087 0.913 32 H 0.138 0.862 33 H 0.087 0.913 34 H 0.150 0.850 35 H 0.112 0.888 36 H 0.123 0.877 37 H 0.114 0.886 38 H 0.080 0.920 39 H 0.252 0.748 40 H 0.119 0.881 41 H 0.124 0.876 42 H 0.003 0.997 43 H 0.000 1.000 44 H 0.071 0.929 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -36.288 -7.921 -7.769 37.947 hybrid contribution 0.147 0.358 0.614 0.726 sum -36.141 -7.563 -7.155 37.611 Atomic orbital electron populations 1.23418 0.76066 1.05898 1.02478 1.86075 1.23811 1.26262 1.87786 1.18453 0.91430 0.84273 0.90858 1.21330 1.01761 0.90922 1.20845 1.18310 0.90086 0.85302 0.91302 1.86085 1.21383 1.28919 1.87851 1.23428 0.76021 1.05778 1.02554 1.19482 0.90953 0.98207 1.17789 1.18151 0.82303 0.92403 0.91584 1.86136 1.15013 1.34069 1.87919 1.23264 0.89114 0.84741 1.05008 1.21471 0.92946 0.98956 0.87079 1.45896 1.08621 1.61570 1.21151 1.21281 0.82087 0.77552 0.89017 1.90652 1.51338 1.56240 1.48655 1.21638 0.98772 1.01470 0.94159 1.18690 0.90757 0.94747 0.95390 1.21696 0.94273 1.38777 1.03500 0.90669 1.26159 0.96710 0.96755 1.00944 1.70178 1.02087 1.48596 1.36845 0.85355 0.76850 0.79161 0.78754 1.18630 1.21284 1.18804 1.20459 0.93128 0.97711 1.19179 0.91490 0.91439 0.86053 0.82264 0.91340 0.86159 0.91306 0.85033 0.88811 0.87705 0.88636 0.91993 0.74782 0.88112 0.87644 0.99737 1.00024 0.92861 0.83145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.81 113.37 1.11 1.21 16 2 O -0.33 -4.86 10.49 -92.29 -0.97 -5.82 16 3 C 0.20 3.38 6.68 22.48 0.15 3.53 16 4 C -0.33 -5.05 8.02 22.48 0.18 -4.87 16 5 C 0.20 3.76 6.68 22.48 0.15 3.91 16 6 O -0.33 -5.73 10.49 -92.36 -0.97 -6.70 16 7 C 0.02 0.12 9.81 113.37 1.11 1.23 16 8 C -0.24 -5.41 9.92 22.48 0.22 -5.19 16 9 C 0.20 4.24 6.68 22.48 0.15 4.39 16 10 O -0.32 -6.83 10.08 -92.35 -0.93 -7.76 16 11 C 0.05 0.86 4.87 71.98 0.35 1.21 16 12 C 0.12 2.74 6.06 86.38 0.52 3.27 16 13 N -0.72 -19.96 5.50 -463.06 -2.55 -22.50 16 14 C 0.51 20.33 7.83 87.66 0.69 21.02 16 15 O -0.59 -29.38 15.98 -3.01 -0.05 -29.43 16 16 C -0.12 -5.01 5.64 29.85 0.17 -4.84 16 17 C 0.04 2.39 4.26 29.85 0.13 2.52 16 18 C -0.54 -31.69 9.11 25.60 0.23 -31.45 16 19 H 0.08 3.98 7.74 -2.91 -0.02 3.96 16 20 C -0.01 -0.49 5.46 84.65 0.46 -0.03 16 21 N -0.94 -60.39 13.29 21.45 0.28 -60.11 16 22 Si 0.98 45.06 29.54 68.60 2.03 47.09 16 23 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 24 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 25 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 26 C -0.29 -5.21 8.97 22.48 0.20 -5.01 16 27 H 0.07 0.28 7.66 -2.39 -0.02 0.26 16 28 H 0.07 0.27 7.66 -2.39 -0.02 0.25 16 29 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.16 1.46 4.52 -2.91 -0.01 1.44 16 31 H 0.07 0.35 7.65 -2.38 -0.02 0.33 16 32 H 0.12 0.45 8.14 -2.38 -0.02 0.43 16 33 H 0.07 0.34 7.66 -2.39 -0.02 0.32 16 34 H 0.13 3.03 8.06 -2.91 -0.02 3.01 16 35 H 0.09 1.19 7.66 -2.39 -0.02 1.17 16 36 H 0.11 1.25 7.66 -2.38 -0.02 1.23 16 37 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 39 H 0.42 9.14 8.47 -92.71 -0.79 8.35 16 40 H 0.10 3.76 8.14 -2.39 -0.02 3.74 16 41 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 42 H -0.02 -1.01 8.10 -2.39 -0.02 -1.03 16 43 H -0.02 -1.21 8.10 -2.39 -0.02 -1.23 16 44 H 0.26 15.86 8.31 -92.70 -0.77 15.09 16 45 H 0.15 2.24 6.29 -2.91 -0.02 2.22 16 Total: -1.00 -83.83 380.90 2.90 -80.93 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 0.22 Total: 13.41 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: 5.83 Total: -9.11 kcal Atomic # 7 Polarization: -80.35 SS G_CDS: -2.26 Total: -82.61 kcal Atomic # 8 Polarization: -46.80 SS G_CDS: -2.92 Total: -49.72 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -83.83 2.90 -80.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291055619.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.325 kcal (2) G-P(sol) polarization free energy of solvation -83.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds