Wall clock time and date at job start Tue Mar 31 2020 13:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35991 * 116.99793 * 2 1 4 4 C 1.38601 * 120.01440 * 0.02562 * 3 2 1 5 5 C 1.38813 * 120.02350 * 179.97438 * 4 3 2 6 6 N 1.40091 * 119.98149 * 179.74640 * 5 4 3 7 7 C 1.46503 * 119.99587 * 292.86148 * 6 5 4 8 8 C 1.34776 * 120.00169 * 112.86296 * 6 5 4 9 9 O 1.21285 * 119.99994 * 5.27832 * 8 6 5 10 10 C 1.50693 * 119.99478 * 185.28086 * 8 6 5 11 11 C 1.53009 * 109.47013 * 179.97438 * 10 8 6 12 12 C 1.50693 * 109.47013 * 180.02562 * 11 10 8 13 13 H 1.07997 * 120.00776 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99546 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99786 * 180.02562 * 14 12 11 16 16 Si 1.86795 * 120.00211 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.47357 * 90.00258 * 16 14 12 18 18 H 1.48500 * 109.47472 * 210.00298 * 16 14 12 19 19 H 1.48509 * 109.47079 * 330.00281 * 16 14 12 20 20 C 1.38820 * 120.03897 * 0.02562 * 5 4 3 21 21 C 1.38596 * 120.01783 * 0.02562 * 20 5 4 22 22 O 1.35999 * 120.00621 * 180.02562 * 21 20 5 23 23 C 1.42899 * 117.00089 * 359.95241 * 22 21 20 24 24 C 1.38984 * 120.00823 * 180.02562 * 3 2 1 25 25 O 1.36165 * 120.02212 * 0.02562 * 24 3 2 26 26 C 1.42899 * 117.00155 * 89.99290 * 25 24 3 27 27 H 1.08993 * 109.47359 * 59.99166 * 1 2 3 28 28 H 1.08993 * 109.46829 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46681 * 299.99519 * 1 2 3 30 30 H 1.08001 * 119.98429 * 0.02562 * 4 3 2 31 31 H 1.09006 * 109.46829 * 89.99837 * 7 6 5 32 32 H 1.08997 * 109.46927 * 210.00038 * 7 6 5 33 33 H 1.09007 * 109.47177 * 330.00428 * 7 6 5 34 34 H 1.09003 * 109.47235 * 299.99782 * 10 8 6 35 35 H 1.09005 * 109.47661 * 60.00348 * 10 8 6 36 36 H 1.08995 * 109.46669 * 300.00000 * 11 10 8 37 37 H 1.08998 * 109.46744 * 60.00094 * 11 10 8 38 38 H 0.97003 * 119.99702 * 179.97438 * 15 14 12 39 39 H 1.08003 * 119.98592 * 179.97438 * 20 5 4 40 40 H 1.09003 * 109.47073 * 300.00035 * 23 22 21 41 41 H 1.08996 * 109.46987 * 59.99795 * 23 22 21 42 42 H 1.08997 * 109.46909 * 180.02562 * 23 22 21 43 43 H 1.09003 * 109.46800 * 60.00188 * 26 25 24 44 44 H 1.08997 * 109.46853 * 179.97438 * 26 25 24 45 45 H 1.09000 * 109.47157 * 300.00681 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2917 2.3743 0.0005 5 6 1.9217 3.6112 0.0011 6 7 1.1581 4.7857 -0.0038 7 6 0.3502 5.1293 -1.1766 8 6 1.1667 5.5996 1.0705 9 8 1.9076 5.3664 2.0020 10 6 0.2558 6.7993 1.1141 11 6 0.4611 7.5478 2.4327 12 6 -0.4502 8.7471 2.4766 13 1 -1.1102 8.9546 1.6473 14 6 -0.4415 9.5797 3.5756 15 7 -1.2372 10.6262 3.6142 16 14 0.6995 9.2206 5.0104 17 1 1.9994 9.9047 4.7924 18 1 0.0844 9.7157 6.2680 19 1 0.9219 7.7557 5.1114 20 6 3.3079 3.6851 0.0005 21 6 4.0642 2.5236 -0.0011 22 8 5.4222 2.5963 -0.0011 23 6 6.0020 3.9023 -0.0004 24 6 3.4343 1.2847 -0.0005 25 8 4.1765 0.1431 -0.0016 26 6 4.5295 -0.4000 -1.2753 27 1 -0.3634 0.5139 -0.8898 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 0.2132 2.3177 0.0014 31 1 -0.6457 4.6989 -1.0705 32 1 0.2708 6.2133 -1.2582 33 1 0.8244 4.7311 -2.0737 34 1 0.4872 7.4617 0.2800 35 1 -0.7811 6.4711 1.0407 36 1 0.2294 6.8852 3.2665 37 1 1.4979 7.8760 2.5065 38 1 -1.2313 11.2117 4.3876 39 1 3.7972 4.6480 0.0005 40 1 5.6798 4.4434 -0.8901 41 1 5.6798 4.4424 0.8898 42 1 7.0887 3.8174 -0.0010 43 1 5.1158 0.3310 -1.8322 44 1 5.1190 -1.3058 -1.1333 45 1 3.6235 -0.6392 -1.8321 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291536319.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:59 Heat of formation + Delta-G solvation = -108.742314 kcal Electronic energy + Delta-G solvation = -27847.086876 eV Core-core repulsion = 23831.851110 eV Total energy + Delta-G solvation = -4015.235765 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.14029 -39.74462 -39.19570 -37.85823 -36.80744 -34.71289 -33.56455 -31.44632 -30.02388 -29.87284 -28.06901 -27.29384 -27.11759 -26.71161 -25.51093 -22.87846 -22.17497 -21.08553 -19.42780 -18.44911 -17.59096 -17.52309 -17.11094 -16.74283 -16.41689 -16.23548 -15.81765 -15.71408 -15.28428 -15.16056 -14.89646 -14.69938 -14.11934 -13.86906 -13.61594 -13.21127 -13.12689 -12.66830 -12.64182 -12.49945 -12.48552 -12.32221 -12.02617 -11.80847 -11.72984 -11.44725 -11.40076 -11.01473 -10.84590 -10.22397 -10.10458 -10.08815 -9.83333 -9.39544 -9.23235 -9.05752 -8.54972 -8.37119 -8.21059 -6.07276 -4.06481 0.91590 1.17881 2.57579 2.87394 2.95323 3.24668 3.34863 3.42009 3.43518 3.52824 3.75103 4.47273 4.72287 4.79293 4.83373 4.91465 4.93753 4.97100 5.02241 5.05282 5.15376 5.18711 5.23269 5.24300 5.26321 5.28003 5.32749 5.35907 5.36940 5.51957 5.58782 5.94176 5.96494 5.99003 6.07173 6.23665 6.55054 6.66272 6.89112 7.02908 7.29292 7.35809 7.36809 7.53568 7.73418 8.38819 8.49503 8.95027 9.55621 11.05384 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.016633 B = 0.003102 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.016771 B = 9024.090529 C = 9785.533199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.302 6.302 3 C 0.157 3.843 4 C -0.237 4.237 5 C 0.227 3.773 6 N -0.592 5.592 7 C 0.082 3.918 8 C 0.513 3.487 9 O -0.520 6.520 10 C -0.117 4.117 11 C 0.001 3.999 12 C -0.526 4.526 13 H 0.073 0.927 14 C 0.070 3.930 15 N -0.902 5.902 16 Si 0.876 3.124 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.261 1.261 20 C -0.219 4.219 21 C 0.159 3.841 22 O -0.302 6.302 23 C 0.023 3.977 24 C 0.021 3.979 25 O -0.311 6.311 26 C 0.035 3.965 27 H 0.057 0.943 28 H 0.102 0.898 29 H 0.059 0.941 30 H 0.138 0.862 31 H 0.059 0.941 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.024 0.976 37 H 0.019 0.981 38 H 0.264 0.736 39 H 0.138 0.862 40 H 0.056 0.944 41 H 0.062 0.938 42 H 0.102 0.898 43 H 0.043 0.957 44 H 0.090 0.910 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.792 -20.576 -15.040 26.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.215 6.215 3 C 0.110 3.890 4 C -0.258 4.258 5 C 0.136 3.864 6 N -0.324 5.324 7 C -0.060 4.060 8 C 0.304 3.696 9 O -0.393 6.393 10 C -0.157 4.157 11 C -0.037 4.037 12 C -0.564 4.564 13 H 0.091 0.909 14 C -0.132 4.132 15 N -0.541 5.541 16 Si 0.703 3.297 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.185 1.185 20 C -0.239 4.239 21 C 0.112 3.888 22 O -0.215 6.215 23 C -0.072 4.072 24 C -0.024 4.024 25 O -0.227 6.227 26 C -0.060 4.060 27 H 0.075 0.925 28 H 0.120 0.880 29 H 0.078 0.922 30 H 0.156 0.844 31 H 0.078 0.922 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.042 0.958 37 H 0.038 0.962 38 H 0.073 0.927 39 H 0.156 0.844 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.121 0.879 43 H 0.062 0.938 44 H 0.108 0.892 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 8.410 -20.948 -14.248 26.694 hybrid contribution 0.090 0.505 0.479 0.702 sum 8.501 -20.443 -13.769 26.072 Atomic orbital electron populations 1.23141 0.78046 1.04123 1.01761 1.86144 1.21482 1.25620 1.88212 1.18647 0.90401 0.84635 0.95282 1.21072 1.00535 0.90707 1.13469 1.17022 0.89234 0.85685 0.94490 1.45830 1.47394 1.21349 1.17867 1.21878 0.94907 1.02621 0.86583 1.21824 0.83472 0.83961 0.80345 1.90695 1.40248 1.72599 1.35771 1.21727 0.97969 0.92625 1.03355 1.19398 0.97499 0.95432 0.91378 1.21072 1.22398 1.07997 1.04898 0.90873 1.24964 0.95280 0.94639 0.98268 1.69909 1.38527 1.15141 1.30523 0.86814 0.81122 0.79763 0.81975 1.20214 1.21367 1.18529 1.21171 0.93676 0.97811 1.11285 1.18718 0.83047 0.92143 0.94916 1.86129 1.16248 1.30994 1.88081 1.23167 0.99065 0.82887 1.02032 1.16897 0.86320 0.84657 1.14535 1.86196 1.70176 1.37714 1.28610 1.22965 0.99412 0.98420 0.85163 0.92471 0.87971 0.92226 0.84413 0.92199 0.89552 0.91157 0.89305 0.89241 0.95766 0.96249 0.92661 0.84442 0.92501 0.91915 0.87926 0.93840 0.89167 0.93856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 101.05 0.99 1.18 16 2 O -0.30 -3.62 10.27 -34.39 -0.35 -3.97 16 3 C 0.16 2.11 6.69 -39.17 -0.26 1.85 16 4 C -0.24 -3.06 8.83 -39.23 -0.35 -3.41 16 5 C 0.23 3.28 4.82 -83.65 -0.40 2.87 16 6 N -0.59 -8.45 2.93 -120.80 -0.35 -8.81 16 7 C 0.08 0.81 10.10 59.85 0.60 1.41 16 8 C 0.51 9.39 7.55 -10.99 -0.08 9.31 16 9 O -0.52 -11.60 15.55 5.55 0.09 -11.51 16 10 C -0.12 -2.20 4.32 -27.88 -0.12 -2.32 16 11 C 0.00 0.02 3.33 -27.88 -0.09 -0.07 16 12 C -0.53 -14.74 9.66 -34.44 -0.33 -15.08 16 13 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 14 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 15 N -0.90 -27.63 13.96 55.43 0.77 -26.85 16 16 Si 0.88 22.40 27.47 -169.99 -4.67 17.73 16 17 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 18 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 19 H -0.26 -6.68 6.54 56.52 0.37 -6.31 16 20 C -0.22 -3.16 8.31 -39.23 -0.33 -3.49 16 21 C 0.16 2.27 6.69 -39.17 -0.26 2.01 16 22 O -0.30 -3.98 10.27 -34.42 -0.35 -4.33 16 23 C 0.02 0.23 9.81 101.05 0.99 1.22 16 24 C 0.02 0.31 5.75 -39.03 -0.22 0.08 16 25 O -0.31 -4.41 9.98 -45.60 -0.45 -4.87 16 26 C 0.04 0.35 11.14 101.05 1.13 1.48 16 27 H 0.06 0.36 7.66 -51.93 -0.40 -0.03 16 28 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 30 H 0.14 1.50 6.29 -52.49 -0.33 1.17 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.80 6.48 -51.93 -0.34 0.47 16 33 H 0.07 0.56 8.05 -51.93 -0.42 0.14 16 34 H 0.09 1.50 7.24 -51.93 -0.38 1.12 16 35 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 36 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 37 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 38 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 39 H 0.14 1.94 6.29 -52.48 -0.33 1.61 16 40 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 41 H 0.06 0.66 7.66 -51.93 -0.40 0.26 16 42 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 376.44 15.07 5.67 5.67 Total: -1.00 -36.36 376.44 -5.18 -41.54 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -6.69 Total: -3.59 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: 1.16 Total: -1.01 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: 0.42 Total: -35.66 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -1.08 Total: -24.68 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.67 Total: 17.73 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.36 -5.18 -41.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291536319.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.205 kcal (2) G-P(sol) polarization free energy of solvation -36.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds