Wall clock time and date at job start Tue Mar 31 2020 14:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35898 * 116.99641 * 2 1 4 4 C 1.38635 * 120.02776 * 0.02562 * 3 2 1 5 5 C 1.38636 * 119.89179 * 180.02562 * 4 3 2 6 6 O 1.35900 * 120.02815 * 179.97438 * 5 4 3 7 7 C 1.42903 * 116.99934 * 0.02562 * 6 5 4 8 8 C 1.38772 * 119.94385 * 0.02562 * 5 4 3 9 9 C 1.38182 * 120.05496 * 359.97438 * 8 5 4 10 10 C 1.50696 * 119.94566 * 180.02562 * 9 8 5 11 11 H 1.09001 * 109.47210 * 204.97790 * 10 9 8 12 12 O 1.42903 * 109.46774 * 324.97681 * 10 9 8 13 13 C 1.53002 * 109.47154 * 84.97339 * 10 9 8 14 14 N 1.46501 * 109.46972 * 179.97438 * 13 10 9 15 15 C 1.34776 * 119.99983 * 180.02562 * 14 13 10 16 16 O 1.21283 * 119.99767 * 359.97438 * 15 14 13 17 17 C 1.50696 * 120.00166 * 180.02562 * 15 14 13 18 18 C 1.53002 * 109.47154 * 179.97438 * 17 15 14 19 19 C 1.50696 * 109.47154 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99995 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00126 * 180.02562 * 19 18 17 22 22 N 1.31515 * 119.99969 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99987 * 359.97438 * 21 19 18 24 24 H 1.48494 * 109.47075 * 90.00349 * 23 21 19 25 25 H 1.48496 * 109.47171 * 210.00679 * 23 21 19 26 26 H 1.48500 * 109.46801 * 330.00414 * 23 21 19 27 27 C 1.38171 * 120.10615 * 0.02562 * 9 8 5 28 28 H 1.08992 * 109.47713 * 60.00038 * 1 2 3 29 29 H 1.09003 * 109.46815 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47188 * 299.99025 * 1 2 3 31 31 H 1.08009 * 120.05593 * 359.74934 * 4 3 2 32 32 H 1.08997 * 109.46951 * 299.99975 * 7 6 5 33 33 H 1.08997 * 109.47042 * 59.99597 * 7 6 5 34 34 H 1.08997 * 109.47126 * 179.97438 * 7 6 5 35 35 H 1.08000 * 119.97581 * 179.97438 * 8 5 4 36 36 H 0.96702 * 114.00514 * 60.00469 * 12 10 9 37 37 H 1.08997 * 109.46983 * 300.00127 * 13 10 9 38 38 H 1.09002 * 109.46651 * 60.00141 * 13 10 9 39 39 H 0.96996 * 120.00263 * 0.02562 * 14 13 10 40 40 H 1.09001 * 109.47210 * 299.99946 * 17 15 14 41 41 H 1.09002 * 109.47226 * 59.99988 * 17 15 14 42 42 H 1.09001 * 109.47430 * 300.00316 * 18 17 15 43 43 H 1.09002 * 109.46651 * 60.00141 * 18 17 15 44 44 H 0.97007 * 119.99814 * 179.97438 * 22 21 19 45 45 H 1.08002 * 119.97247 * 179.97438 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3739 0.0005 5 6 1.9236 3.6077 0.0000 6 8 1.1866 4.7495 0.0000 7 6 -0.2350 4.6041 0.0011 8 6 3.3096 3.6758 -0.0016 9 6 4.0595 2.5151 -0.0021 10 6 5.5645 2.5919 -0.0033 11 1 5.9745 1.6801 -0.4375 12 8 5.9834 3.7181 -0.7769 13 6 6.0686 2.7442 1.4333 14 7 7.5317 2.8182 1.4321 15 6 8.2005 2.9541 2.5943 16 8 7.5909 3.0156 3.6411 17 6 9.7055 3.0309 2.5932 18 6 10.2095 3.1830 4.0298 19 6 11.7145 3.2604 4.0285 20 1 12.2572 3.2068 3.0964 21 6 12.3986 3.3995 5.2175 22 7 13.7120 3.4675 5.2164 23 14 11.4599 3.4928 6.8298 24 1 11.2824 2.1247 7.3791 25 1 12.2219 4.3204 7.7991 26 1 10.1291 4.1076 6.5929 27 6 3.4317 1.2843 -0.0016 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8901 31 1 0.2127 2.3189 -0.0031 32 1 -0.5448 4.0556 -0.8883 33 1 -0.5435 4.0564 0.8916 34 1 -0.7010 5.5895 0.0015 35 1 3.8027 4.6366 -0.0025 36 1 5.6547 4.5658 -0.4475 37 1 5.6585 3.6560 1.8674 38 1 5.7490 1.8852 2.0233 39 1 8.0192 2.7694 0.5950 40 1 10.1154 2.1192 2.1585 41 1 10.0250 3.8901 2.0035 42 1 9.7995 4.0948 4.4641 43 1 9.8899 2.3240 4.6198 44 1 14.1933 3.5658 6.0529 45 1 4.0199 0.3785 -0.0024 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291661148.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:58 Heat of formation + Delta-G solvation = -143.659886 kcal Electronic energy + Delta-G solvation = -26431.222098 eV Core-core repulsion = 22414.472193 eV Total energy + Delta-G solvation = -4016.749905 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.10411 -39.48934 -39.27531 -38.38253 -36.27605 -34.14962 -33.43138 -31.65085 -31.16855 -30.74743 -28.88033 -28.08418 -27.08960 -25.92242 -23.64747 -22.87017 -21.37753 -21.15600 -19.70811 -19.06866 -17.51367 -17.36292 -16.83984 -16.71706 -16.49475 -16.42202 -15.96405 -15.92795 -15.54115 -15.22686 -15.15851 -14.65202 -14.32571 -13.98199 -13.62323 -13.32030 -13.03411 -12.99392 -12.85281 -12.70062 -12.51999 -12.09500 -12.04639 -11.90588 -11.77108 -11.61768 -11.37814 -10.92583 -10.89600 -10.58484 -10.11757 -10.00615 -9.75206 -9.24581 -9.14256 -9.02654 -8.87010 -8.47295 -8.43376 -5.99633 -3.98082 0.78240 1.04449 2.70814 2.77252 3.15996 3.17879 3.40670 3.46662 3.48422 3.58414 4.09361 4.22119 4.38110 4.50753 4.54133 4.54707 4.61235 4.62733 4.63526 4.71778 4.75527 4.79640 4.95356 4.97377 4.98555 5.25357 5.35832 5.42496 5.61050 5.75230 5.77489 5.79306 6.06878 6.10985 6.13781 6.15589 6.60949 6.67431 6.74953 7.00763 7.23725 7.40678 7.47836 7.80215 7.84693 8.53934 8.69744 9.03877 9.63520 11.13171 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.020317 B = 0.002092 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.798052 B =13383.551842 C =13510.805244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.312 6.312 3 C 0.168 3.832 4 C -0.296 4.296 5 C 0.169 3.831 6 O -0.312 6.312 7 C 0.027 3.973 8 C -0.177 4.177 9 C -0.036 4.036 10 C 0.140 3.860 11 H 0.121 0.879 12 O -0.547 6.547 13 C 0.093 3.907 14 N -0.737 5.737 15 C 0.510 3.490 16 O -0.542 6.542 17 C -0.122 4.122 18 C 0.001 3.999 19 C -0.524 4.524 20 H 0.073 0.927 21 C 0.068 3.932 22 N -0.904 5.904 23 Si 0.878 3.122 24 H -0.277 1.277 25 H -0.289 1.289 26 H -0.261 1.261 27 C -0.175 4.175 28 H 0.055 0.945 29 H 0.103 0.897 30 H 0.055 0.945 31 H 0.135 0.865 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.103 0.897 35 H 0.133 0.867 36 H 0.379 0.621 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.404 0.596 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.023 0.977 43 H 0.019 0.981 44 H 0.263 0.737 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.158 -2.760 -16.209 36.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.225 6.225 3 C 0.122 3.878 4 C -0.316 4.316 5 C 0.124 3.876 6 O -0.225 6.225 7 C -0.068 4.068 8 C -0.196 4.196 9 C -0.037 4.037 10 C 0.081 3.919 11 H 0.139 0.861 12 O -0.354 6.354 13 C -0.032 4.032 14 N -0.391 5.391 15 C 0.299 3.701 16 O -0.418 6.418 17 C -0.162 4.162 18 C -0.037 4.037 19 C -0.562 4.562 20 H 0.091 0.909 21 C -0.133 4.133 22 N -0.543 5.543 23 Si 0.705 3.295 24 H -0.203 1.203 25 H -0.215 1.215 26 H -0.185 1.185 27 C -0.194 4.194 28 H 0.073 0.927 29 H 0.121 0.879 30 H 0.074 0.926 31 H 0.152 0.848 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.121 0.879 35 H 0.151 0.849 36 H 0.228 0.772 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.239 0.761 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.041 0.959 43 H 0.037 0.963 44 H 0.072 0.928 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -32.019 -3.141 -15.659 35.781 hybrid contribution -1.148 0.353 0.831 1.461 sum -33.168 -2.788 -14.829 36.438 Atomic orbital electron populations 1.23089 0.78237 1.04238 1.01295 1.86111 1.21523 1.26615 1.88243 1.18657 0.91929 0.83645 0.93522 1.21268 1.00545 0.92022 1.17739 1.18616 0.90995 0.84521 0.93508 1.86109 1.19272 1.28881 1.88243 1.23088 0.78332 1.04133 1.01293 1.19996 0.90452 0.99031 1.10081 1.19918 0.95915 0.92045 0.95865 1.21057 0.88162 0.91391 0.91313 0.86142 1.86636 1.76294 1.16940 1.55504 1.21900 0.82298 1.03311 0.95693 1.46044 1.05986 1.76983 1.10125 1.21559 0.91595 0.74359 0.82627 1.90656 1.70556 1.49007 1.31626 1.21662 0.87908 1.03376 1.03208 1.19370 0.96419 0.97551 0.90321 1.21126 0.89484 1.50582 0.95001 0.90896 1.24981 0.94719 0.94423 0.99202 1.69917 1.06513 1.50724 1.27128 0.86789 0.80752 0.78524 0.83450 1.20271 1.21483 1.18534 1.20130 0.91314 0.98178 1.09730 0.92664 0.87914 0.92589 0.84760 0.92656 0.92597 0.87906 0.84904 0.77231 0.91170 0.90518 0.76144 0.89578 0.89509 0.95858 0.96306 0.92757 0.84534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.31 -2.75 10.50 -19.42 -0.20 -2.95 16 3 C 0.17 1.59 6.68 -39.24 -0.26 1.33 16 4 C -0.30 -2.51 8.02 -39.29 -0.32 -2.82 16 5 C 0.17 1.60 6.68 -39.24 -0.26 1.33 16 6 O -0.31 -2.74 10.50 -19.43 -0.20 -2.95 16 7 C 0.03 0.13 9.81 101.05 0.99 1.12 16 8 C -0.18 -1.66 9.26 -39.40 -0.37 -2.03 16 9 C -0.04 -0.34 5.00 -104.67 -0.52 -0.86 16 10 C 0.14 1.26 3.30 -27.88 -0.09 1.17 16 11 H 0.12 0.98 8.05 -51.93 -0.42 0.56 16 12 O -0.55 -5.01 12.88 -35.23 -0.45 -5.47 16 13 C 0.09 1.07 5.32 -4.04 -0.02 1.05 16 14 N -0.74 -9.84 5.45 -60.29 -0.33 -10.17 16 15 C 0.51 9.39 7.83 -10.99 -0.09 9.30 16 16 O -0.54 -12.19 15.98 5.56 0.09 -12.10 16 17 C -0.12 -2.39 5.64 -27.88 -0.16 -2.55 16 18 C 0.00 0.03 3.33 -27.88 -0.09 -0.06 16 19 C -0.52 -15.19 9.66 -34.44 -0.33 -15.52 16 20 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 21 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 22 N -0.90 -28.29 13.96 55.43 0.77 -27.52 16 23 Si 0.88 22.88 27.47 -169.99 -4.67 18.21 16 24 H -0.28 -7.11 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.26 -6.78 6.54 56.52 0.37 -6.41 16 27 C -0.17 -1.67 9.61 -39.41 -0.38 -2.05 16 28 H 0.05 0.20 7.66 -51.93 -0.40 -0.19 16 29 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.22 7.66 -51.93 -0.40 -0.18 16 31 H 0.13 0.81 4.54 -52.48 -0.24 0.57 16 32 H 0.05 0.20 7.66 -51.93 -0.40 -0.19 16 33 H 0.06 0.22 7.66 -51.93 -0.40 -0.17 16 34 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.13 1.06 6.60 -52.49 -0.35 0.71 16 36 H 0.38 2.59 7.39 45.56 0.34 2.93 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.40 4.46 8.35 -40.82 -0.34 4.12 16 40 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 41 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 42 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 43 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 44 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 45 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 376.38 15.07 5.67 5.67 Total: -1.00 -37.24 376.38 -6.23 -43.48 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -5.91 Total: 1.33 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -1.00 Total: -7.53 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.45 Total: -37.69 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.77 Total: -23.47 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -4.67 Total: 18.21 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.24 -6.23 -43.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291661148.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.184 kcal (2) G-P(sol) polarization free energy of solvation -37.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds