Wall clock time and date at job start Tue Mar 31 2020 14:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35898 * 116.99641 * 2 1 4 4 C 1.38635 * 120.02776 * 0.02562 * 3 2 1 5 5 C 1.38636 * 119.89179 * 180.02562 * 4 3 2 6 6 O 1.35900 * 120.02815 * 179.97438 * 5 4 3 7 7 C 1.42903 * 116.99934 * 0.02562 * 6 5 4 8 8 C 1.38772 * 119.94385 * 0.02562 * 5 4 3 9 9 C 1.38182 * 120.05496 * 359.97438 * 8 5 4 10 10 C 1.50696 * 119.94566 * 180.02562 * 9 8 5 11 11 H 1.09001 * 109.47210 * 204.97790 * 10 9 8 12 12 O 1.42903 * 109.46774 * 324.97681 * 10 9 8 13 13 C 1.53002 * 109.47154 * 84.97339 * 10 9 8 14 14 N 1.46501 * 109.46972 * 179.97438 * 13 10 9 15 15 C 1.34776 * 119.99983 * 180.02562 * 14 13 10 16 16 O 1.21283 * 119.99767 * 359.97438 * 15 14 13 17 17 C 1.50696 * 120.00166 * 180.02562 * 15 14 13 18 18 C 1.53002 * 109.47154 * 179.97438 * 17 15 14 19 19 C 1.50696 * 109.47154 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99995 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00126 * 180.02562 * 19 18 17 22 22 N 1.31515 * 119.99969 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99987 * 359.97438 * 21 19 18 24 24 H 1.48494 * 109.47075 * 90.00349 * 23 21 19 25 25 H 1.48496 * 109.47171 * 210.00679 * 23 21 19 26 26 H 1.48500 * 109.46801 * 330.00414 * 23 21 19 27 27 C 1.38171 * 120.10615 * 0.02562 * 9 8 5 28 28 H 1.08992 * 109.47713 * 60.00038 * 1 2 3 29 29 H 1.09003 * 109.46815 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47188 * 299.99025 * 1 2 3 31 31 H 1.08009 * 120.05593 * 359.74934 * 4 3 2 32 32 H 1.08997 * 109.46951 * 299.99975 * 7 6 5 33 33 H 1.08997 * 109.47042 * 59.99597 * 7 6 5 34 34 H 1.08997 * 109.47126 * 179.97438 * 7 6 5 35 35 H 1.08000 * 119.97581 * 179.97438 * 8 5 4 36 36 H 0.96702 * 114.00514 * 60.00469 * 12 10 9 37 37 H 1.08997 * 109.46983 * 300.00127 * 13 10 9 38 38 H 1.09002 * 109.46651 * 60.00141 * 13 10 9 39 39 H 0.96996 * 120.00263 * 0.02562 * 14 13 10 40 40 H 1.09001 * 109.47210 * 299.99946 * 17 15 14 41 41 H 1.09002 * 109.47226 * 59.99988 * 17 15 14 42 42 H 1.09001 * 109.47430 * 300.00316 * 18 17 15 43 43 H 1.09002 * 109.46651 * 60.00141 * 18 17 15 44 44 H 0.97007 * 119.99814 * 179.97438 * 22 21 19 45 45 H 1.08002 * 119.97247 * 179.97438 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3739 0.0005 5 6 1.9236 3.6077 0.0000 6 8 1.1866 4.7495 0.0000 7 6 -0.2350 4.6041 0.0011 8 6 3.3096 3.6758 -0.0016 9 6 4.0595 2.5151 -0.0021 10 6 5.5645 2.5919 -0.0033 11 1 5.9745 1.6801 -0.4375 12 8 5.9834 3.7181 -0.7769 13 6 6.0686 2.7442 1.4333 14 7 7.5317 2.8182 1.4321 15 6 8.2005 2.9541 2.5943 16 8 7.5909 3.0156 3.6411 17 6 9.7055 3.0309 2.5932 18 6 10.2095 3.1830 4.0298 19 6 11.7145 3.2604 4.0285 20 1 12.2572 3.2068 3.0964 21 6 12.3986 3.3995 5.2175 22 7 13.7120 3.4675 5.2164 23 14 11.4599 3.4928 6.8298 24 1 11.2824 2.1247 7.3791 25 1 12.2219 4.3204 7.7991 26 1 10.1291 4.1076 6.5929 27 6 3.4317 1.2843 -0.0016 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8901 31 1 0.2127 2.3189 -0.0031 32 1 -0.5448 4.0556 -0.8883 33 1 -0.5435 4.0564 0.8916 34 1 -0.7010 5.5895 0.0015 35 1 3.8027 4.6366 -0.0025 36 1 5.6547 4.5658 -0.4475 37 1 5.6585 3.6560 1.8674 38 1 5.7490 1.8852 2.0233 39 1 8.0192 2.7694 0.5950 40 1 10.1154 2.1192 2.1585 41 1 10.0250 3.8901 2.0035 42 1 9.7995 4.0948 4.4641 43 1 9.8899 2.3240 4.6198 44 1 14.1933 3.5658 6.0529 45 1 4.0199 0.3785 -0.0024 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291661148.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:57 Heat of formation + Delta-G solvation = -172.930741 kcal Electronic energy + Delta-G solvation = -26432.491377 eV Core-core repulsion = 22414.472193 eV Total energy + Delta-G solvation = -4018.019184 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.73191 -40.75228 -39.83852 -39.27692 -36.96817 -35.58469 -35.26035 -33.32675 -32.25083 -31.33133 -29.73867 -28.82131 -27.60696 -27.48286 -24.66689 -23.51882 -22.91487 -22.08185 -21.12651 -19.75725 -19.20699 -18.09432 -17.95334 -17.45073 -17.37717 -17.12531 -16.95871 -16.65594 -16.44491 -16.34458 -16.20411 -15.72157 -15.70004 -15.09904 -14.80952 -14.54588 -14.48860 -14.07343 -13.74626 -13.44539 -13.35818 -13.33267 -13.18689 -12.86469 -12.52044 -12.50510 -12.32282 -12.18679 -12.09977 -11.95151 -11.75304 -11.50118 -11.38362 -11.33850 -10.76937 -10.75327 -10.09627 -9.70617 -9.08265 -8.30206 -6.32924 0.11770 0.37517 1.34159 1.35853 1.51272 1.70616 2.10024 2.27155 2.30005 2.36166 2.60011 3.05307 3.39967 3.53440 3.74943 3.85567 3.97965 4.02727 4.05607 4.12823 4.26501 4.27863 4.31320 4.33458 4.38358 4.43297 4.47102 4.53825 4.67922 4.69143 4.70566 4.87600 5.03404 5.13735 5.14667 5.33485 5.39860 5.44925 5.46962 5.49675 5.62830 6.12832 6.25175 6.43155 6.58122 6.64857 6.73635 7.32142 7.32854 8.85394 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.020317 B = 0.002092 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.798052 B =13383.551842 C =13510.805244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.330 6.330 3 C 0.157 3.843 4 C -0.295 4.295 5 C 0.158 3.842 6 O -0.330 6.330 7 C 0.016 3.984 8 C -0.191 4.191 9 C -0.040 4.040 10 C 0.157 3.843 11 H 0.133 0.867 12 O -0.554 6.554 13 C 0.094 3.906 14 N -0.712 5.712 15 C 0.515 3.485 16 O -0.588 6.588 17 C -0.117 4.117 18 C 0.005 3.995 19 C -0.529 4.529 20 H 0.051 0.949 21 C 0.012 3.988 22 N -0.943 5.943 23 Si 0.939 3.061 24 H -0.269 1.269 25 H -0.278 1.278 26 H -0.262 1.262 27 C -0.189 4.189 28 H 0.067 0.933 29 H 0.120 0.880 30 H 0.064 0.936 31 H 0.156 0.844 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.120 0.880 35 H 0.141 0.859 36 H 0.388 0.612 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.418 0.582 40 H 0.103 0.897 41 H 0.102 0.898 42 H 0.009 0.991 43 H 0.008 0.992 44 H 0.267 0.733 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.392 -2.947 -16.966 38.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.243 6.243 3 C 0.111 3.889 4 C -0.314 4.314 5 C 0.112 3.888 6 O -0.243 6.243 7 C -0.078 4.078 8 C -0.209 4.209 9 C -0.041 4.041 10 C 0.097 3.903 11 H 0.151 0.849 12 O -0.362 6.362 13 C -0.030 4.030 14 N -0.366 5.366 15 C 0.303 3.697 16 O -0.468 6.468 17 C -0.157 4.157 18 C -0.033 4.033 19 C -0.567 4.567 20 H 0.069 0.931 21 C -0.186 4.186 22 N -0.584 5.584 23 Si 0.764 3.236 24 H -0.194 1.194 25 H -0.204 1.204 26 H -0.186 1.186 27 C -0.208 4.208 28 H 0.085 0.915 29 H 0.138 0.862 30 H 0.082 0.918 31 H 0.174 0.826 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.138 0.862 35 H 0.159 0.841 36 H 0.239 0.761 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.256 0.744 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.028 0.972 43 H 0.027 0.973 44 H 0.076 0.924 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -34.275 -3.329 -16.477 38.175 hybrid contribution -0.536 0.413 0.960 1.174 sum -34.811 -2.916 -15.517 38.224 Atomic orbital electron populations 1.23384 0.76319 1.05833 1.02256 1.86088 1.23614 1.26445 1.88180 1.18819 0.92160 0.84251 0.93640 1.21476 1.01701 0.91380 1.16830 1.18792 0.91278 0.85103 0.93631 1.86087 1.21160 1.28887 1.88182 1.23381 0.76458 1.05693 1.02252 1.20219 0.90945 0.99491 1.10276 1.19890 0.95853 0.92072 0.96303 1.20896 0.88070 0.91895 0.89460 0.84906 1.86619 1.76421 1.17558 1.55566 1.22005 0.80637 1.02800 0.97599 1.45760 1.06962 1.74641 1.09241 1.21188 0.90990 0.74306 0.83210 1.90643 1.71111 1.51594 1.33448 1.21495 0.89263 1.05033 0.99868 1.19226 0.93929 0.96308 0.93877 1.21444 0.91438 1.49615 0.94162 0.93112 1.25823 0.95542 0.94381 1.02838 1.70029 1.07996 1.52106 1.28272 0.85814 0.79297 0.78969 0.79537 1.19373 1.20354 1.18608 1.20328 0.91873 0.98523 1.10087 0.91471 0.86151 0.91787 0.82615 0.91465 0.91801 0.86170 0.84084 0.76092 0.91723 0.91152 0.74403 0.87848 0.87930 0.97226 0.97317 0.92403 0.83989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 113.37 1.11 1.24 16 2 O -0.33 -5.42 10.50 -92.40 -0.97 -6.39 16 3 C 0.16 2.82 6.68 22.49 0.15 2.97 16 4 C -0.29 -4.58 8.02 22.46 0.18 -4.40 16 5 C 0.16 2.81 6.68 22.49 0.15 2.96 16 6 O -0.33 -5.40 10.50 -92.43 -0.97 -6.37 16 7 C 0.02 0.13 9.81 113.37 1.11 1.24 16 8 C -0.19 -3.41 9.26 22.38 0.21 -3.20 16 9 C -0.04 -0.70 5.00 -19.90 -0.10 -0.80 16 10 C 0.16 2.55 3.30 29.85 0.10 2.65 16 11 H 0.13 1.86 8.05 -2.39 -0.02 1.84 16 12 O -0.55 -9.06 12.88 -148.98 -1.92 -10.98 16 13 C 0.09 2.05 5.32 86.38 0.46 2.51 16 14 N -0.71 -17.74 5.45 -463.06 -2.52 -20.26 16 15 C 0.51 18.34 7.83 87.66 0.69 19.03 16 16 O -0.59 -26.19 15.98 -3.04 -0.05 -26.24 16 17 C -0.12 -4.46 5.64 29.85 0.17 -4.29 16 18 C 0.00 0.23 3.33 29.85 0.10 0.33 16 19 C -0.53 -30.87 9.66 25.60 0.25 -30.62 16 20 H 0.05 3.11 7.99 -2.91 -0.02 3.09 16 21 C 0.01 0.71 5.47 84.65 0.46 1.17 16 22 N -0.94 -59.63 13.96 21.45 0.30 -59.33 16 23 Si 0.94 47.36 27.47 68.60 1.88 49.25 16 24 H -0.27 -13.09 7.11 99.48 0.71 -12.39 16 25 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 26 H -0.26 -13.14 6.54 99.48 0.65 -12.49 16 27 C -0.19 -3.46 9.61 22.38 0.22 -3.24 16 28 H 0.07 0.35 7.66 -2.39 -0.02 0.33 16 29 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.06 0.38 7.66 -2.38 -0.02 0.37 16 31 H 0.16 1.55 4.54 -2.91 -0.01 1.54 16 32 H 0.07 0.35 7.66 -2.39 -0.02 0.33 16 33 H 0.06 0.39 7.66 -2.39 -0.02 0.37 16 34 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.14 2.13 6.60 -2.91 -0.02 2.11 16 36 H 0.39 4.65 7.39 -74.06 -0.55 4.10 16 37 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.42 8.16 8.35 -92.71 -0.77 7.39 16 40 H 0.10 3.57 8.14 -2.39 -0.02 3.56 16 41 H 0.10 3.58 8.14 -2.39 -0.02 3.56 16 42 H 0.01 0.50 7.16 -2.39 -0.02 0.48 16 43 H 0.01 0.44 7.53 -2.39 -0.02 0.42 16 44 H 0.27 15.76 8.31 -92.70 -0.77 14.99 16 45 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -80.24 376.38 0.65 -79.59 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -0.35 Total: 13.21 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: 5.25 Total: -12.47 kcal Atomic # 7 Polarization: -77.37 SS G_CDS: -2.22 Total: -79.59 kcal Atomic # 8 Polarization: -46.07 SS G_CDS: -3.91 Total: -49.98 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 1.88 Total: 49.25 kcal Total: -80.24 0.65 -79.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291661148.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.343 kcal (2) G-P(sol) polarization free energy of solvation -80.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds