Wall clock time and date at job start Tue Mar 31 2020 14:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35907 * 116.99777 * 2 1 4 4 C 1.38634 * 120.02319 * 0.02562 * 3 2 1 5 5 C 1.38640 * 119.88432 * 180.02562 * 4 3 2 6 6 O 1.35901 * 120.02162 * 179.97438 * 5 4 3 7 7 C 1.42902 * 117.00077 * 0.02562 * 6 5 4 8 8 C 1.38767 * 119.94932 * 359.97438 * 5 4 3 9 9 C 1.38176 * 120.05321 * 0.03128 * 8 5 4 10 10 C 1.50699 * 119.94421 * 179.97438 * 9 8 5 11 11 H 1.09000 * 109.47247 * 339.99728 * 10 9 8 12 12 O 1.42905 * 109.46972 * 219.99664 * 10 9 8 13 13 C 1.53005 * 109.47155 * 100.00116 * 10 9 8 14 14 N 1.46501 * 109.46915 * 185.00324 * 13 10 9 15 15 C 1.34777 * 119.99904 * 179.97438 * 14 13 10 16 16 O 1.21281 * 119.99830 * 359.97438 * 15 14 13 17 17 C 1.50692 * 120.00142 * 179.97438 * 15 14 13 18 18 C 1.53005 * 109.47152 * 180.02562 * 17 15 14 19 19 C 1.50702 * 109.46885 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00546 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99653 * 179.97438 * 19 18 17 22 22 N 1.31509 * 120.00438 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99930 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46663 * 60.00135 * 23 21 19 25 25 H 1.48495 * 109.47062 * 179.97438 * 23 21 19 26 26 H 1.48492 * 109.47261 * 300.00151 * 23 21 19 27 27 C 1.38178 * 120.10847 * 0.22934 * 9 8 5 28 28 H 1.09003 * 109.47044 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47605 * 299.99538 * 1 2 3 30 30 H 1.09003 * 109.47322 * 60.00151 * 1 2 3 31 31 H 1.08000 * 120.06088 * 0.03610 * 4 3 2 32 32 H 1.09006 * 109.46501 * 60.00972 * 7 6 5 33 33 H 1.09006 * 109.46650 * 180.02562 * 7 6 5 34 34 H 1.08991 * 109.47348 * 300.00842 * 7 6 5 35 35 H 1.07993 * 119.97330 * 180.02562 * 8 5 4 36 36 H 0.96691 * 114.00079 * 299.99840 * 12 10 9 37 37 H 1.09000 * 109.46735 * 304.99446 * 13 10 9 38 38 H 1.08998 * 109.47316 * 64.99479 * 13 10 9 39 39 H 0.96997 * 120.00111 * 359.97438 * 14 13 10 40 40 H 1.09001 * 109.47436 * 299.99549 * 17 15 14 41 41 H 1.08998 * 109.47372 * 59.99747 * 17 15 14 42 42 H 1.09000 * 109.46735 * 299.99524 * 18 17 15 43 43 H 1.08998 * 109.47406 * 60.00339 * 18 17 15 44 44 H 0.97003 * 120.00658 * 180.02562 * 22 21 19 45 45 H 1.08004 * 119.96801 * 179.72777 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3739 0.0005 5 6 1.9236 3.6077 0.0000 6 8 1.1866 4.7495 0.0000 7 6 -0.2350 4.6041 0.0011 8 6 3.3096 3.6758 -0.0005 9 6 4.0595 2.5152 -0.0012 10 6 5.5645 2.5920 -0.0024 11 1 5.8779 3.5750 -0.3541 12 8 6.0921 1.5855 -0.8688 13 6 6.0877 2.3677 1.4178 14 7 7.5399 2.5603 1.4393 15 6 8.2221 2.4137 2.5924 16 8 7.6338 2.1228 3.6122 17 6 9.7159 2.6112 2.6144 18 6 10.2391 2.3871 4.0346 19 6 11.7329 2.5853 4.0567 20 1 12.2568 2.8447 3.1486 21 6 12.4307 2.4354 5.2363 22 7 11.7929 2.1200 6.3423 23 14 14.2825 2.6803 5.2637 24 1 14.6053 4.0632 4.8290 25 1 14.7901 2.4641 6.6423 26 1 14.9239 1.7092 4.3415 27 6 3.4316 1.2843 -0.0061 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.2127 2.3189 0.0015 32 1 -0.5434 4.0565 0.8918 33 1 -0.7010 5.5895 0.0005 34 1 -0.5448 4.0554 -0.8882 35 1 3.8026 4.6366 -0.0005 36 1 5.8527 0.6836 -0.6156 37 1 5.6168 3.0801 2.0952 38 1 5.8510 1.3525 1.7362 39 1 8.0103 2.7934 0.6237 40 1 10.1867 1.8983 1.9375 41 1 9.9529 3.6262 2.2954 42 1 9.7684 3.0997 4.7119 43 1 10.0022 1.3720 4.3532 44 1 12.2838 2.0149 7.1723 45 1 4.0200 0.3786 -0.0110 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291661156.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:01 Heat of formation + Delta-G solvation = -146.536035 kcal Electronic energy + Delta-G solvation = -26351.052804 eV Core-core repulsion = 22334.178180 eV Total energy + Delta-G solvation = -4016.874624 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.06328 -39.37809 -39.23828 -38.29362 -36.22647 -34.06093 -33.39442 -31.57030 -30.89135 -30.71573 -28.78910 -27.94528 -27.05855 -25.59564 -23.65199 -22.83297 -21.43145 -21.32968 -19.66985 -19.00513 -17.47316 -17.13591 -16.68481 -16.64363 -16.45948 -16.39056 -15.92967 -15.62952 -15.45301 -15.17225 -15.10156 -14.53176 -14.36893 -14.18802 -13.57756 -13.25078 -12.94903 -12.89659 -12.79358 -12.64586 -12.13638 -12.05679 -11.90245 -11.82258 -11.71833 -11.57515 -11.11824 -10.87545 -10.85680 -10.61349 -10.48981 -9.90220 -9.62083 -9.16309 -9.06544 -8.92884 -8.76248 -8.39542 -8.27831 -5.92067 -3.96377 0.82188 1.08342 2.74519 2.80884 3.22453 3.30914 3.37640 3.41888 3.43670 3.57138 4.15255 4.26682 4.41733 4.51202 4.54067 4.59672 4.64523 4.66639 4.67025 4.75941 4.80616 4.83097 4.98484 5.00661 5.02950 5.30975 5.42614 5.54541 5.67123 5.80705 5.81478 5.88863 6.10968 6.15582 6.29100 6.30922 6.70923 6.72801 6.95129 7.04471 7.28859 7.78448 7.91165 7.94463 8.11655 8.43149 8.83259 9.12241 9.66859 11.18839 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.022969 B = 0.001967 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.739657 B =14232.861637 C =14511.840654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.312 6.312 3 C 0.169 3.831 4 C -0.296 4.296 5 C 0.168 3.832 6 O -0.312 6.312 7 C 0.027 3.973 8 C -0.174 4.174 9 C -0.036 4.036 10 C 0.140 3.860 11 H 0.120 0.880 12 O -0.548 6.548 13 C 0.093 3.907 14 N -0.739 5.739 15 C 0.510 3.490 16 O -0.536 6.536 17 C -0.130 4.130 18 C 0.037 3.963 19 C -0.527 4.527 20 H 0.056 0.944 21 C 0.057 3.943 22 N -0.890 5.890 23 Si 0.894 3.106 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.277 1.277 27 C -0.177 4.177 28 H 0.102 0.898 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.135 0.865 32 H 0.056 0.944 33 H 0.102 0.898 34 H 0.055 0.945 35 H 0.137 0.863 36 H 0.379 0.621 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.401 0.599 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.023 0.977 43 H 0.023 0.977 44 H 0.261 0.739 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.644 0.730 -18.443 33.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.124 3.876 4 C -0.316 4.316 5 C 0.122 3.878 6 O -0.225 6.225 7 C -0.069 4.069 8 C -0.193 4.193 9 C -0.037 4.037 10 C 0.081 3.919 11 H 0.138 0.862 12 O -0.354 6.354 13 C -0.031 4.031 14 N -0.394 5.394 15 C 0.298 3.702 16 O -0.411 6.411 17 C -0.170 4.170 18 C -0.001 4.001 19 C -0.565 4.565 20 H 0.074 0.926 21 C -0.144 4.144 22 N -0.529 5.529 23 Si 0.721 3.279 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.203 1.203 27 C -0.195 4.195 28 H 0.121 0.879 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.152 0.848 32 H 0.074 0.926 33 H 0.121 0.879 34 H 0.073 0.927 35 H 0.155 0.845 36 H 0.227 0.773 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.236 0.764 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.041 0.959 43 H 0.041 0.959 44 H 0.071 0.929 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -27.669 0.995 -17.780 32.904 hybrid contribution 0.233 -0.256 0.026 0.347 sum -27.435 0.739 -17.754 32.687 Atomic orbital electron populations 1.23087 0.78244 1.04234 1.01281 1.86110 1.21524 1.26615 1.88251 1.18615 0.91853 0.83656 0.93521 1.21265 1.00530 0.92027 1.17745 1.18659 0.91072 0.84493 0.93567 1.86109 1.19242 1.28899 1.88261 1.23088 0.78369 1.04107 1.01293 1.20140 0.90364 0.99105 1.09658 1.19924 0.95959 0.92017 0.95815 1.21063 0.87000 0.93860 0.89990 0.86234 1.86631 1.76438 1.18387 1.53963 1.21894 0.82685 1.02774 0.95780 1.46097 1.06915 1.74159 1.12257 1.21581 0.91225 0.75228 0.82158 1.90672 1.71080 1.46371 1.33026 1.21861 0.88242 1.02398 1.04451 1.18896 0.94801 0.98304 0.88054 1.21200 0.92628 1.47993 0.94709 0.92621 1.25032 0.98381 0.95326 0.95703 1.69987 1.35713 1.47759 0.99437 0.86644 0.85635 0.78619 0.76976 1.20262 1.21330 1.20251 1.20008 0.91360 0.98138 1.10032 0.87916 0.92586 0.92683 0.84767 0.92584 0.87927 0.92680 0.84549 0.77266 0.90599 0.91187 0.76419 0.90169 0.90210 0.95854 0.95853 0.92925 0.84908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.31 -2.85 10.50 -19.45 -0.20 -3.06 16 3 C 0.17 1.66 6.68 -39.24 -0.26 1.40 16 4 C -0.30 -2.61 8.02 -39.29 -0.32 -2.92 16 5 C 0.17 1.65 6.68 -39.24 -0.26 1.38 16 6 O -0.31 -2.84 10.50 -19.43 -0.20 -3.05 16 7 C 0.03 0.13 9.81 101.05 0.99 1.12 16 8 C -0.17 -1.73 9.60 -39.41 -0.38 -2.11 16 9 C -0.04 -0.35 4.97 -104.67 -0.52 -0.87 16 10 C 0.14 1.34 3.24 -27.88 -0.09 1.25 16 11 H 0.12 1.03 8.00 -51.93 -0.42 0.61 16 12 O -0.55 -5.29 13.13 -35.23 -0.46 -5.75 16 13 C 0.09 1.15 5.29 -4.04 -0.02 1.13 16 14 N -0.74 -10.50 5.50 -60.29 -0.33 -10.83 16 15 C 0.51 9.99 7.83 -10.99 -0.09 9.90 16 16 O -0.54 -12.90 15.98 5.56 0.09 -12.81 16 17 C -0.13 -2.68 5.64 -27.88 -0.16 -2.84 16 18 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 19 C -0.53 -15.17 9.11 -34.44 -0.31 -15.48 16 20 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 21 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 22 N -0.89 -27.79 13.29 55.43 0.74 -27.06 16 23 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 C -0.18 -1.73 9.26 -39.41 -0.36 -2.10 16 28 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 30 H 0.05 0.22 7.66 -51.93 -0.40 -0.18 16 31 H 0.13 0.85 4.54 -52.49 -0.24 0.61 16 32 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 33 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.05 0.22 7.66 -51.93 -0.40 -0.18 16 35 H 0.14 1.21 8.03 -52.49 -0.42 0.78 16 36 H 0.38 2.75 7.49 45.56 0.34 3.10 16 37 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.40 4.68 8.47 -40.82 -0.35 4.34 16 40 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 41 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 42 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 43 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 44 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 45 H 0.13 1.12 6.77 -52.48 -0.36 0.76 16 LS Contribution 380.47 15.07 5.73 5.73 Total: -1.00 -37.33 380.47 -6.61 -43.95 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -5.94 Total: 2.50 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -1.01 Total: -6.53 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: 0.40 Total: -37.89 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -0.78 Total: -24.67 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.33 -6.61 -43.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291661156.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.591 kcal (2) G-P(sol) polarization free energy of solvation -37.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds