Wall clock time and date at job start Tue Mar 31 2020 14:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35907 * 116.99777 * 2 1 4 4 C 1.38634 * 120.02319 * 0.02562 * 3 2 1 5 5 C 1.38640 * 119.88432 * 180.02562 * 4 3 2 6 6 O 1.35901 * 120.02162 * 179.97438 * 5 4 3 7 7 C 1.42902 * 117.00077 * 0.02562 * 6 5 4 8 8 C 1.38767 * 119.94932 * 359.97438 * 5 4 3 9 9 C 1.38176 * 120.05321 * 0.03128 * 8 5 4 10 10 C 1.50699 * 119.94421 * 179.97438 * 9 8 5 11 11 H 1.09000 * 109.47247 * 339.99728 * 10 9 8 12 12 O 1.42905 * 109.46972 * 219.99664 * 10 9 8 13 13 C 1.53005 * 109.47155 * 100.00116 * 10 9 8 14 14 N 1.46501 * 109.46915 * 185.00324 * 13 10 9 15 15 C 1.34777 * 119.99904 * 179.97438 * 14 13 10 16 16 O 1.21281 * 119.99830 * 359.97438 * 15 14 13 17 17 C 1.50692 * 120.00142 * 179.97438 * 15 14 13 18 18 C 1.53005 * 109.47152 * 180.02562 * 17 15 14 19 19 C 1.50702 * 109.46885 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00546 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99653 * 179.97438 * 19 18 17 22 22 N 1.31509 * 120.00438 * 359.97438 * 21 19 18 23 23 Si 1.86808 * 119.99930 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46663 * 60.00135 * 23 21 19 25 25 H 1.48495 * 109.47062 * 179.97438 * 23 21 19 26 26 H 1.48492 * 109.47261 * 300.00151 * 23 21 19 27 27 C 1.38178 * 120.10847 * 0.22934 * 9 8 5 28 28 H 1.09003 * 109.47044 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47605 * 299.99538 * 1 2 3 30 30 H 1.09003 * 109.47322 * 60.00151 * 1 2 3 31 31 H 1.08000 * 120.06088 * 0.03610 * 4 3 2 32 32 H 1.09006 * 109.46501 * 60.00972 * 7 6 5 33 33 H 1.09006 * 109.46650 * 180.02562 * 7 6 5 34 34 H 1.08991 * 109.47348 * 300.00842 * 7 6 5 35 35 H 1.07993 * 119.97330 * 180.02562 * 8 5 4 36 36 H 0.96691 * 114.00079 * 299.99840 * 12 10 9 37 37 H 1.09000 * 109.46735 * 304.99446 * 13 10 9 38 38 H 1.08998 * 109.47316 * 64.99479 * 13 10 9 39 39 H 0.96997 * 120.00111 * 359.97438 * 14 13 10 40 40 H 1.09001 * 109.47436 * 299.99549 * 17 15 14 41 41 H 1.08998 * 109.47372 * 59.99747 * 17 15 14 42 42 H 1.09000 * 109.46735 * 299.99524 * 18 17 15 43 43 H 1.08998 * 109.47406 * 60.00339 * 18 17 15 44 44 H 0.97003 * 120.00658 * 180.02562 * 22 21 19 45 45 H 1.08004 * 119.96801 * 179.72777 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3739 0.0005 5 6 1.9236 3.6077 0.0000 6 8 1.1866 4.7495 0.0000 7 6 -0.2350 4.6041 0.0011 8 6 3.3096 3.6758 -0.0005 9 6 4.0595 2.5152 -0.0012 10 6 5.5645 2.5920 -0.0024 11 1 5.8779 3.5750 -0.3541 12 8 6.0921 1.5855 -0.8688 13 6 6.0877 2.3677 1.4178 14 7 7.5399 2.5603 1.4393 15 6 8.2221 2.4137 2.5924 16 8 7.6338 2.1228 3.6122 17 6 9.7159 2.6112 2.6144 18 6 10.2391 2.3871 4.0346 19 6 11.7329 2.5853 4.0567 20 1 12.2568 2.8447 3.1486 21 6 12.4307 2.4354 5.2363 22 7 11.7929 2.1200 6.3423 23 14 14.2825 2.6803 5.2637 24 1 14.6053 4.0632 4.8290 25 1 14.7901 2.4641 6.6423 26 1 14.9239 1.7092 4.3415 27 6 3.4316 1.2843 -0.0061 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.2127 2.3189 0.0015 32 1 -0.5434 4.0565 0.8918 33 1 -0.7010 5.5895 0.0005 34 1 -0.5448 4.0554 -0.8882 35 1 3.8026 4.6366 -0.0005 36 1 5.8527 0.6836 -0.6156 37 1 5.6168 3.0801 2.0952 38 1 5.8510 1.3525 1.7362 39 1 8.0103 2.7934 0.6237 40 1 10.1867 1.8983 1.9375 41 1 9.9529 3.6262 2.2954 42 1 9.7684 3.0997 4.7119 43 1 10.0022 1.3720 4.3532 44 1 12.2838 2.0149 7.1723 45 1 4.0200 0.3786 -0.0110 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291661156.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:00 Heat of formation + Delta-G solvation = -176.040577 kcal Electronic energy + Delta-G solvation = -26352.332216 eV Core-core repulsion = 22334.178180 eV Total energy + Delta-G solvation = -4018.154037 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.73005 -40.72998 -39.83719 -39.26609 -36.96358 -35.59725 -35.27392 -33.04994 -32.19718 -31.33960 -29.63331 -28.75120 -27.54198 -27.37982 -24.78750 -23.55814 -23.18881 -22.09308 -21.12570 -19.74232 -18.82200 -18.09053 -17.91422 -17.39845 -17.31396 -17.12866 -16.95907 -16.62538 -16.51578 -16.44284 -16.21700 -15.70364 -15.67095 -15.14295 -14.63765 -14.46026 -14.16075 -14.04958 -13.73810 -13.43332 -13.31163 -13.21227 -13.16983 -12.75090 -12.51813 -12.51304 -12.49019 -12.32327 -12.18565 -11.88458 -11.62737 -11.49601 -11.34495 -11.30467 -10.71165 -10.54644 -10.09046 -9.71111 -9.08306 -8.16153 -6.30276 0.11526 0.37467 1.43300 1.48126 1.55730 1.73426 2.10423 2.27343 2.30041 2.45724 2.60250 3.16486 3.40475 3.53868 3.74344 3.85583 3.97832 4.03011 4.07151 4.14798 4.26593 4.28196 4.31634 4.33795 4.38530 4.47654 4.53888 4.59616 4.68044 4.69359 4.71629 4.87469 5.11195 5.13583 5.14438 5.38931 5.43129 5.48356 5.53152 5.65637 5.87417 6.12963 6.19663 6.43226 6.59528 6.65752 6.88150 7.36427 7.40031 8.96292 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.022969 B = 0.001967 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.739657 B =14232.861637 C =14511.840654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.330 6.330 3 C 0.158 3.842 4 C -0.294 4.294 5 C 0.157 3.843 6 O -0.330 6.330 7 C 0.016 3.984 8 C -0.188 4.188 9 C -0.041 4.041 10 C 0.158 3.842 11 H 0.134 0.866 12 O -0.553 6.553 13 C 0.094 3.906 14 N -0.712 5.712 15 C 0.511 3.489 16 O -0.591 6.591 17 C -0.119 4.119 18 C 0.042 3.958 19 C -0.544 4.544 20 H 0.077 0.923 21 C -0.009 4.009 22 N -0.938 5.938 23 Si 0.975 3.025 24 H -0.262 1.262 25 H -0.288 1.288 26 H -0.262 1.262 27 C -0.191 4.191 28 H 0.120 0.880 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.157 0.843 32 H 0.063 0.937 33 H 0.121 0.879 34 H 0.067 0.933 35 H 0.143 0.857 36 H 0.388 0.612 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.419 0.581 40 H 0.105 0.895 41 H 0.105 0.895 42 H -0.018 1.018 43 H -0.018 1.018 44 H 0.263 0.737 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.632 1.281 -20.793 34.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.243 6.243 3 C 0.112 3.888 4 C -0.313 4.313 5 C 0.111 3.889 6 O -0.243 6.243 7 C -0.078 4.078 8 C -0.207 4.207 9 C -0.042 4.042 10 C 0.098 3.902 11 H 0.152 0.848 12 O -0.361 6.361 13 C -0.031 4.031 14 N -0.366 5.366 15 C 0.300 3.700 16 O -0.471 6.471 17 C -0.159 4.159 18 C 0.004 3.996 19 C -0.582 4.582 20 H 0.095 0.905 21 C -0.206 4.206 22 N -0.578 5.578 23 Si 0.799 3.201 24 H -0.187 1.187 25 H -0.214 1.214 26 H -0.187 1.187 27 C -0.210 4.210 28 H 0.138 0.862 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.174 0.826 32 H 0.082 0.918 33 H 0.139 0.861 34 H 0.086 0.914 35 H 0.161 0.839 36 H 0.239 0.761 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.256 0.744 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.000 1.000 43 H 0.000 1.000 44 H 0.071 0.929 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -27.679 1.553 -20.215 34.310 hybrid contribution 0.057 -0.451 0.731 0.861 sum -27.622 1.102 -19.484 33.820 Atomic orbital electron populations 1.23386 0.76312 1.05838 1.02265 1.86088 1.23633 1.26437 1.88183 1.18788 0.92104 0.84277 0.93629 1.21479 1.01715 0.91363 1.16792 1.18816 0.91296 0.85110 0.93633 1.86088 1.21182 1.28862 1.88177 1.23390 0.76430 1.05729 1.02260 1.20340 0.90931 0.99459 1.09995 1.19890 0.95852 0.92099 0.96350 1.20884 0.86881 0.94508 0.87888 0.84816 1.86611 1.76487 1.19162 1.53854 1.22008 0.81042 1.02158 0.97848 1.45766 1.07802 1.71843 1.11197 1.21339 0.90971 0.74979 0.82739 1.90659 1.71859 1.49286 1.35278 1.21637 0.89235 1.04605 1.00434 1.18692 0.94839 0.94618 0.91449 1.21703 0.93336 1.47507 0.95605 0.90535 1.26164 1.04498 0.94760 0.95188 1.70174 1.38215 1.49097 1.00326 0.85355 0.78231 0.79405 0.77128 1.18675 1.21382 1.18679 1.20226 0.91941 0.98525 1.10278 0.86156 0.91825 0.91399 0.82556 0.91826 0.86101 0.91429 0.83941 0.76103 0.91554 0.91866 0.74383 0.87721 0.87642 0.99978 0.99993 0.92879 0.84167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.25 16 2 O -0.33 -5.73 10.50 -92.50 -0.97 -6.71 16 3 C 0.16 2.98 6.68 22.49 0.15 3.13 16 4 C -0.29 -4.85 8.02 22.46 0.18 -4.67 16 5 C 0.16 2.96 6.68 22.49 0.15 3.11 16 6 O -0.33 -5.66 10.50 -92.43 -0.97 -6.63 16 7 C 0.02 0.13 9.81 113.37 1.11 1.25 16 8 C -0.19 -3.64 9.60 22.38 0.21 -3.42 16 9 C -0.04 -0.77 4.97 -19.89 -0.10 -0.87 16 10 C 0.16 2.80 3.24 29.85 0.10 2.89 16 11 H 0.13 2.01 8.00 -2.39 -0.02 1.99 16 12 O -0.55 -9.68 13.13 -148.98 -1.96 -11.64 16 13 C 0.09 2.26 5.29 86.38 0.46 2.72 16 14 N -0.71 -19.35 5.50 -463.06 -2.55 -21.90 16 15 C 0.51 20.10 7.83 87.65 0.69 20.78 16 16 O -0.59 -29.60 15.98 -3.03 -0.05 -29.64 16 17 C -0.12 -4.87 5.64 29.85 0.17 -4.70 16 18 C 0.04 2.36 4.26 29.85 0.13 2.49 16 19 C -0.54 -31.38 9.11 25.60 0.23 -31.15 16 20 H 0.08 4.00 7.74 -2.91 -0.02 3.98 16 21 C -0.01 -0.52 5.46 84.66 0.46 -0.06 16 22 N -0.94 -60.33 13.29 21.45 0.28 -60.04 16 23 Si 0.98 44.82 29.54 68.60 2.03 46.84 16 24 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 25 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 26 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 27 C -0.19 -3.66 9.26 22.38 0.21 -3.45 16 28 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.44 7.66 -2.39 -0.02 0.42 16 30 H 0.07 0.40 7.66 -2.39 -0.02 0.38 16 31 H 0.16 1.68 4.54 -2.91 -0.01 1.67 16 32 H 0.06 0.43 7.66 -2.38 -0.02 0.41 16 33 H 0.12 0.52 8.14 -2.38 -0.02 0.50 16 34 H 0.07 0.39 7.66 -2.39 -0.02 0.37 16 35 H 0.14 2.43 8.03 -2.91 -0.02 2.41 16 36 H 0.39 5.09 7.49 -74.06 -0.55 4.54 16 37 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.42 8.68 8.47 -92.71 -0.79 7.90 16 40 H 0.10 3.76 8.14 -2.39 -0.02 3.74 16 41 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 42 H -0.02 -1.17 8.10 -2.39 -0.02 -1.19 16 43 H -0.02 -1.18 8.10 -2.39 -0.02 -1.20 16 44 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 45 H 0.14 2.31 6.77 -2.91 -0.02 2.29 16 Total: -1.00 -83.95 380.47 0.76 -83.19 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -0.32 Total: 17.22 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: 5.26 Total: -10.69 kcal Atomic # 7 Polarization: -79.68 SS G_CDS: -2.26 Total: -81.94 kcal Atomic # 8 Polarization: -50.68 SS G_CDS: -3.95 Total: -54.62 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -83.95 0.76 -83.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291661156.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.853 kcal (2) G-P(sol) polarization free energy of solvation -83.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds