Wall clock time and date at job start Tue Mar 31 2020 13:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50697 * 120.00257 * 2 1 4 4 N 1.46897 * 109.46780 * 124.46498 * 3 2 1 5 5 C 1.46892 * 111.00240 * 75.86929 * 4 3 2 6 6 C 1.50703 * 109.47487 * 195.64322 * 5 4 3 7 7 H 1.07995 * 119.99606 * 4.71207 * 6 5 4 8 8 C 1.37875 * 120.00040 * 184.69922 * 6 5 4 9 9 N 1.31512 * 120.00366 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99769 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47422 * 60.00347 * 10 8 6 12 12 H 1.48505 * 109.46775 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.46867 * 300.00248 * 10 8 6 14 14 C 1.46902 * 111.00007 * 199.82454 * 4 3 2 15 15 C 1.50704 * 109.47353 * 66.04270 * 14 4 3 16 16 C 1.33640 * 122.74554 * 94.73249 * 15 14 4 17 17 S 1.76192 * 107.92375 * 179.97438 * 16 15 14 18 18 C 1.70975 * 90.28415 * 0.27926 * 17 16 15 19 19 C 1.50699 * 124.91861 * 179.84030 * 18 17 16 20 20 C 1.50698 * 109.47164 * 269.99680 * 19 18 17 21 21 O 1.21283 * 120.00019 * 359.97438 * 20 19 18 22 22 N 1.34772 * 120.00023 * 180.02562 * 20 19 18 23 23 C 1.46510 * 120.00027 * 180.02562 * 22 20 19 24 24 C 1.46501 * 120.00336 * 359.97438 * 22 20 19 25 25 N 1.29034 * 110.16315 * 359.83732 * 18 17 16 26 26 H 1.07997 * 119.99226 * 359.97438 * 1 2 3 27 27 H 1.07994 * 120.00111 * 179.97438 * 1 2 3 28 28 H 1.07999 * 119.99780 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47045 * 4.47051 * 3 2 1 30 30 H 1.09003 * 109.47574 * 244.46903 * 3 2 1 31 31 H 1.08993 * 109.47478 * 315.65085 * 5 4 3 32 32 H 1.09005 * 109.47420 * 75.64753 * 5 4 3 33 33 H 0.97000 * 120.00669 * 179.97438 * 9 8 6 34 34 H 1.09002 * 109.47577 * 186.04688 * 14 4 3 35 35 H 1.08999 * 109.47001 * 306.04516 * 14 4 3 36 36 H 1.08006 * 126.04233 * 0.04505 * 16 15 14 37 37 H 1.08997 * 109.47064 * 29.99735 * 19 18 17 38 38 H 1.09002 * 109.47104 * 149.99618 * 19 18 17 39 39 H 1.09001 * 109.46962 * 359.97438 * 23 22 20 40 40 H 1.09000 * 109.46742 * 119.99455 * 23 22 20 41 41 H 1.08996 * 109.47128 * 240.00140 * 23 22 20 42 42 H 1.08994 * 109.46923 * 90.00117 * 24 22 20 43 43 H 1.08994 * 109.47314 * 210.00430 * 24 22 20 44 44 H 1.09003 * 109.46516 * 330.00395 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9872 1.3371 1.1419 5 6 4.1645 0.4954 0.8906 6 6 4.8864 0.2406 2.1887 7 1 4.4678 0.5972 3.1182 8 6 6.0809 -0.4479 2.1897 9 7 6.5907 -0.8819 1.0577 10 14 6.9752 -0.7642 3.7989 11 1 6.1034 -1.5574 4.7022 12 1 8.2262 -1.5180 3.5300 13 1 7.3074 0.5317 4.4436 14 6 3.3836 2.7154 1.4598 15 6 2.1826 3.4836 1.9483 16 6 1.8895 3.6188 3.2452 17 16 0.4190 4.5812 3.3713 18 6 0.3400 4.6992 1.6674 19 6 -0.7328 5.4304 0.9022 20 6 -1.8675 4.4855 0.6009 21 8 -1.8104 3.3319 0.9706 22 7 -2.9452 4.9223 -0.0804 23 6 -4.0486 4.0039 -0.3729 24 6 -3.0139 6.3157 -0.5276 25 7 1.3319 4.0715 1.1316 26 1 -0.5399 0.9353 0.0004 27 1 -0.5400 -0.9352 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3580 2.1320 0.0801 30 1 2.6289 1.3983 -0.9273 31 1 3.8472 -0.4538 0.4589 32 1 4.8336 1.0043 0.1967 33 1 7.4313 -1.3660 1.0583 34 1 4.1480 2.7037 2.2367 35 1 3.7820 3.1944 0.5654 36 1 2.4548 3.2112 4.0703 37 1 -1.1025 6.2630 1.5006 38 1 -0.3183 5.8100 -0.0317 39 1 -3.8199 3.0195 0.0356 40 1 -4.9653 4.3816 0.0799 41 1 -4.1811 3.9272 -1.4521 42 1 -2.5778 6.3998 -1.5229 43 1 -4.0552 6.6363 -0.5588 44 1 -2.4598 6.9477 0.1665 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292137738.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:33 Heat of formation + Delta-G solvation = 48.058107 kcal Electronic energy + Delta-G solvation = -25154.595521 eV Core-core repulsion = 21621.204754 eV Total energy + Delta-G solvation = -3533.390767 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.29417 -39.43895 -36.66367 -35.76869 -33.20714 -32.84503 -31.88257 -29.47095 -28.01109 -27.35669 -26.29953 -26.18121 -23.94522 -22.62487 -20.85855 -19.63523 -19.41050 -18.76007 -17.47788 -17.28414 -16.44185 -16.26063 -16.14856 -15.13577 -14.87718 -14.60492 -14.36743 -14.16055 -13.86880 -13.60143 -13.24679 -13.09930 -13.00136 -12.87998 -12.77786 -12.40741 -12.26552 -12.07633 -11.98501 -11.63212 -11.48805 -10.98123 -10.94213 -10.58651 -10.52343 -10.24680 -10.10306 -9.83102 -9.39468 -9.18525 -9.06605 -9.00970 -8.77106 -8.46470 -8.35407 -7.15475 -5.98204 -3.99763 0.94069 1.58675 1.95603 2.40088 2.64926 2.94768 3.16682 3.35722 3.39908 3.42975 4.04591 4.27243 4.46657 4.65121 4.73865 4.91330 5.08341 5.09292 5.19651 5.25571 5.28437 5.36449 5.38000 5.57513 5.59154 5.72694 5.75908 5.95326 6.09836 6.18109 6.28413 6.38850 6.50339 6.57565 6.65833 6.98393 7.22734 7.34114 7.40950 7.52411 7.86207 7.92464 8.03265 8.16026 8.25130 8.60074 9.08342 9.64321 11.12206 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.018445 B = 0.003305 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.655453 B = 8469.837083 C = 9375.810472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.120 4.120 3 C 0.072 3.928 4 N -0.526 5.526 5 C 0.192 3.808 6 C -0.506 4.506 7 H 0.063 0.937 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.897 3.103 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.136 3.864 15 C 0.087 3.913 16 C -0.226 4.226 17 S 0.103 5.897 18 C 0.051 3.949 19 C -0.059 4.059 20 C 0.516 3.484 21 O -0.513 6.513 22 N -0.626 5.626 23 C 0.081 3.919 24 C 0.076 3.924 25 N -0.452 5.452 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.105 0.895 29 H 0.082 0.918 30 H 0.030 0.970 31 H 0.031 0.969 32 H -0.004 1.004 33 H 0.261 0.739 34 H 0.101 0.899 35 H 0.038 0.962 36 H 0.179 0.821 37 H 0.112 0.888 38 H 0.121 0.879 39 H 0.088 0.912 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.073 0.927 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.788 17.564 -1.755 26.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.138 4.138 3 C -0.056 4.056 4 N -0.251 5.251 5 C 0.068 3.932 6 C -0.545 4.545 7 H 0.081 0.919 8 C -0.146 4.146 9 N -0.539 5.539 10 Si 0.724 3.276 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.203 1.203 14 C 0.005 3.995 15 C -0.044 4.044 16 C -0.366 4.366 17 S 0.357 5.643 18 C -0.228 4.228 19 C -0.102 4.102 20 C 0.302 3.698 21 O -0.387 6.387 22 N -0.362 5.362 23 C -0.062 4.062 24 C -0.067 4.067 25 N -0.167 5.167 26 H 0.111 0.889 27 H 0.105 0.895 28 H 0.123 0.877 29 H 0.101 0.899 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.014 0.986 33 H 0.071 0.929 34 H 0.119 0.881 35 H 0.056 0.944 36 H 0.196 0.804 37 H 0.130 0.870 38 H 0.139 0.861 39 H 0.107 0.893 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.092 0.908 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -20.383 17.004 -0.967 26.561 hybrid contribution 1.609 -0.445 -0.246 1.687 sum -18.774 16.558 -1.212 25.062 Atomic orbital electron populations 1.23648 0.95852 1.00961 1.04009 1.22939 0.95534 0.98736 0.96640 1.21327 0.95930 0.95855 0.92476 1.62113 1.18274 1.07601 1.37077 1.19786 0.85036 0.91706 0.96711 1.21136 1.04766 1.35157 0.93413 0.91910 1.24986 0.97322 0.95919 0.96342 1.69948 1.20003 1.38412 1.25492 0.86587 0.78845 0.78329 0.83793 1.20205 1.21423 1.20284 1.20554 0.90545 0.88010 1.00409 1.20410 0.97712 0.97986 0.88335 1.26840 1.00684 1.07330 1.01729 1.83584 1.24005 1.49133 1.07596 1.25870 0.98939 1.03394 0.94574 1.20172 0.91059 0.96906 1.02057 1.20402 0.82705 0.88834 0.77891 1.90792 1.78743 1.18355 1.50842 1.47680 1.19564 1.11836 1.57088 1.21682 0.88263 0.95404 1.00845 1.21834 1.03174 0.81374 1.00325 1.66005 1.03049 1.08903 1.38739 0.88853 0.89455 0.87671 0.89935 0.95192 0.95073 0.98581 0.92908 0.88119 0.94357 0.80351 0.87047 0.86097 0.89307 0.92301 0.92254 0.92220 0.90816 0.90820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.85 14.32 29.01 0.42 -3.44 16 2 C -0.12 -2.47 9.34 -36.03 -0.34 -2.81 16 3 C 0.07 1.55 5.29 -4.98 -0.03 1.52 16 4 N -0.53 -12.22 4.36 -238.97 -1.04 -13.26 16 5 C 0.19 5.15 4.55 -4.98 -0.02 5.13 16 6 C -0.51 -14.32 8.38 -34.44 -0.29 -14.61 16 7 H 0.06 1.75 7.70 -52.49 -0.40 1.35 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 10 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 14 C 0.14 2.82 5.25 -4.97 -0.03 2.79 16 15 C 0.09 1.60 5.64 -84.23 -0.48 1.12 16 16 C -0.23 -3.71 11.11 29.12 0.32 -3.39 16 17 S 0.10 1.38 23.18 -107.50 -2.49 -1.11 16 18 C 0.05 0.73 5.88 -13.45 -0.08 0.65 16 19 C -0.06 -0.58 4.83 -29.04 -0.14 -0.72 16 20 C 0.52 6.13 7.67 -10.99 -0.08 6.05 16 21 O -0.51 -8.53 15.36 5.55 0.09 -8.44 16 22 N -0.63 -5.32 3.27 -189.51 -0.62 -5.94 16 23 C 0.08 0.62 10.69 59.85 0.64 1.26 16 24 C 0.08 0.33 10.29 59.85 0.62 0.94 16 25 N -0.45 -7.85 8.88 -8.06 -0.07 -7.92 16 26 H 0.09 1.81 7.84 -52.49 -0.41 1.39 16 27 H 0.09 1.44 8.06 -52.49 -0.42 1.02 16 28 H 0.11 2.23 7.28 -52.49 -0.38 1.85 16 29 H 0.08 1.76 5.28 -51.93 -0.27 1.48 16 30 H 0.03 0.65 8.00 -51.93 -0.42 0.24 16 31 H 0.03 0.89 6.86 -51.93 -0.36 0.53 16 32 H 0.00 -0.10 8.06 -51.93 -0.42 -0.52 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.10 2.14 7.14 -51.93 -0.37 1.77 16 35 H 0.04 0.80 8.12 -51.93 -0.42 0.37 16 36 H 0.18 2.71 8.06 -52.48 -0.42 2.29 16 37 H 0.11 0.69 7.40 -51.93 -0.38 0.31 16 38 H 0.12 1.00 8.11 -51.93 -0.42 0.58 16 39 H 0.09 0.90 6.90 -51.93 -0.36 0.55 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 43 H 0.07 0.20 8.07 -51.93 -0.42 -0.22 16 44 H 0.07 0.21 6.44 -51.93 -0.33 -0.13 16 LS Contribution 379.95 15.07 5.73 5.73 Total: -1.00 -34.88 379.95 -8.90 -43.79 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -6.62 Total: 0.62 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: 0.42 Total: -4.01 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: -1.00 Total: -53.35 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.09 Total: -8.44 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: 1.38 SS G_CDS: -2.49 Total: -1.11 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.88 -8.90 -43.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292137738.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.844 kcal (2) G-P(sol) polarization free energy of solvation -34.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds