Wall clock time and date at job start Tue Mar 31 2020 13:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50697 * 120.00257 * 2 1 4 4 N 1.46897 * 109.46780 * 124.46498 * 3 2 1 5 5 C 1.46892 * 111.00240 * 75.86929 * 4 3 2 6 6 C 1.50703 * 109.47487 * 195.64322 * 5 4 3 7 7 H 1.07995 * 119.99606 * 4.71207 * 6 5 4 8 8 C 1.37875 * 120.00040 * 184.69922 * 6 5 4 9 9 N 1.31512 * 120.00366 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99769 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47422 * 60.00347 * 10 8 6 12 12 H 1.48505 * 109.46775 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.46867 * 300.00248 * 10 8 6 14 14 C 1.46902 * 111.00007 * 199.82454 * 4 3 2 15 15 C 1.50704 * 109.47353 * 66.04270 * 14 4 3 16 16 C 1.33640 * 122.74554 * 94.73249 * 15 14 4 17 17 S 1.76192 * 107.92375 * 179.97438 * 16 15 14 18 18 C 1.70975 * 90.28415 * 0.27926 * 17 16 15 19 19 C 1.50699 * 124.91861 * 179.84030 * 18 17 16 20 20 C 1.50698 * 109.47164 * 269.99680 * 19 18 17 21 21 O 1.21283 * 120.00019 * 359.97438 * 20 19 18 22 22 N 1.34772 * 120.00023 * 180.02562 * 20 19 18 23 23 C 1.46510 * 120.00027 * 180.02562 * 22 20 19 24 24 C 1.46501 * 120.00336 * 359.97438 * 22 20 19 25 25 N 1.29034 * 110.16315 * 359.83732 * 18 17 16 26 26 H 1.07997 * 119.99226 * 359.97438 * 1 2 3 27 27 H 1.07994 * 120.00111 * 179.97438 * 1 2 3 28 28 H 1.07999 * 119.99780 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47045 * 4.47051 * 3 2 1 30 30 H 1.09003 * 109.47574 * 244.46903 * 3 2 1 31 31 H 1.08993 * 109.47478 * 315.65085 * 5 4 3 32 32 H 1.09005 * 109.47420 * 75.64753 * 5 4 3 33 33 H 0.97000 * 120.00669 * 179.97438 * 9 8 6 34 34 H 1.09002 * 109.47577 * 186.04688 * 14 4 3 35 35 H 1.08999 * 109.47001 * 306.04516 * 14 4 3 36 36 H 1.08006 * 126.04233 * 0.04505 * 16 15 14 37 37 H 1.08997 * 109.47064 * 29.99735 * 19 18 17 38 38 H 1.09002 * 109.47104 * 149.99618 * 19 18 17 39 39 H 1.09001 * 109.46962 * 359.97438 * 23 22 20 40 40 H 1.09000 * 109.46742 * 119.99455 * 23 22 20 41 41 H 1.08996 * 109.47128 * 240.00140 * 23 22 20 42 42 H 1.08994 * 109.46923 * 90.00117 * 24 22 20 43 43 H 1.08994 * 109.47314 * 210.00430 * 24 22 20 44 44 H 1.09003 * 109.46516 * 330.00395 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9872 1.3371 1.1419 5 6 4.1645 0.4954 0.8906 6 6 4.8864 0.2406 2.1887 7 1 4.4678 0.5972 3.1182 8 6 6.0809 -0.4479 2.1897 9 7 6.5907 -0.8819 1.0577 10 14 6.9752 -0.7642 3.7989 11 1 6.1034 -1.5574 4.7022 12 1 8.2262 -1.5180 3.5300 13 1 7.3074 0.5317 4.4436 14 6 3.3836 2.7154 1.4598 15 6 2.1826 3.4836 1.9483 16 6 1.8895 3.6188 3.2452 17 16 0.4190 4.5812 3.3713 18 6 0.3400 4.6992 1.6674 19 6 -0.7328 5.4304 0.9022 20 6 -1.8675 4.4855 0.6009 21 8 -1.8104 3.3319 0.9706 22 7 -2.9452 4.9223 -0.0804 23 6 -4.0486 4.0039 -0.3729 24 6 -3.0139 6.3157 -0.5276 25 7 1.3319 4.0715 1.1316 26 1 -0.5399 0.9353 0.0004 27 1 -0.5400 -0.9352 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3580 2.1320 0.0801 30 1 2.6289 1.3983 -0.9273 31 1 3.8472 -0.4538 0.4589 32 1 4.8336 1.0043 0.1967 33 1 7.4313 -1.3660 1.0583 34 1 4.1480 2.7037 2.2367 35 1 3.7820 3.1944 0.5654 36 1 2.4548 3.2112 4.0703 37 1 -1.1025 6.2630 1.5006 38 1 -0.3183 5.8100 -0.0317 39 1 -3.8199 3.0195 0.0356 40 1 -4.9653 4.3816 0.0799 41 1 -4.1811 3.9272 -1.4521 42 1 -2.5778 6.3998 -1.5229 43 1 -4.0552 6.6363 -0.5588 44 1 -2.4598 6.9477 0.1665 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292137738.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:32 Heat of formation + Delta-G solvation = 24.000546 kcal Electronic energy + Delta-G solvation = -25155.638735 eV Core-core repulsion = 21621.204754 eV Total energy + Delta-G solvation = -3534.433981 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.31784 -40.54060 -38.41145 -36.52104 -35.04959 -34.40295 -33.36486 -30.63259 -29.35323 -28.59307 -27.86118 -26.89319 -25.73102 -24.05266 -22.57834 -20.80629 -20.46592 -20.29594 -18.61430 -18.55303 -18.14038 -17.14153 -16.87690 -16.85388 -16.50561 -16.19105 -15.98201 -15.38547 -15.04696 -14.75807 -14.62874 -14.19984 -14.10113 -13.99626 -13.73982 -13.43565 -13.36557 -13.35581 -13.27295 -12.96826 -12.88363 -12.79207 -12.62671 -12.35535 -12.28487 -12.11015 -11.70338 -11.29927 -11.02728 -10.62632 -10.58499 -10.38229 -10.25058 -9.67672 -9.64709 -9.05944 -8.18838 -6.29578 -0.22933 0.46733 0.75503 1.33766 1.41315 1.44889 1.52655 1.57142 1.70905 2.15231 2.41379 3.01105 3.13343 3.49881 3.55896 3.85677 4.06296 4.12672 4.21576 4.29706 4.37072 4.39060 4.46946 4.49304 4.54896 4.57150 4.70551 4.77824 4.82256 4.86376 4.96282 4.97710 5.00885 5.12936 5.16493 5.26077 5.51779 5.65581 5.70007 5.87396 6.04885 6.29017 6.31037 6.54296 6.82955 6.85797 7.13424 7.39899 8.91896 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.018445 B = 0.003305 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.655453 B = 8469.837083 C = 9375.810472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.148 4.148 3 C 0.080 3.920 4 N -0.530 5.530 5 C 0.210 3.790 6 C -0.521 4.521 7 H 0.064 0.936 8 C 0.003 3.997 9 N -0.935 5.935 10 Si 0.970 3.030 11 H -0.270 1.270 12 H -0.284 1.284 13 H -0.264 1.264 14 C 0.140 3.860 15 C 0.066 3.934 16 C -0.247 4.247 17 S 0.171 5.829 18 C 0.050 3.950 19 C -0.058 4.058 20 C 0.509 3.491 21 O -0.573 6.573 22 N -0.620 5.620 23 C 0.077 3.923 24 C 0.066 3.934 25 N -0.484 5.484 26 H 0.089 0.911 27 H 0.114 0.886 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.018 0.982 31 H 0.006 0.994 32 H -0.034 1.034 33 H 0.264 0.736 34 H 0.089 0.911 35 H 0.028 0.972 36 H 0.183 0.817 37 H 0.156 0.844 38 H 0.140 0.860 39 H 0.058 0.942 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.094 0.906 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.991 19.757 -0.509 29.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.167 4.167 3 C -0.048 4.048 4 N -0.254 5.254 5 C 0.084 3.916 6 C -0.559 4.559 7 H 0.082 0.918 8 C -0.195 4.195 9 N -0.576 5.576 10 Si 0.794 3.206 11 H -0.195 1.195 12 H -0.209 1.209 13 H -0.189 1.189 14 C 0.010 3.990 15 C -0.065 4.065 16 C -0.387 4.387 17 S 0.427 5.573 18 C -0.229 4.229 19 C -0.101 4.101 20 C 0.296 3.704 21 O -0.452 6.452 22 N -0.354 5.354 23 C -0.065 4.065 24 C -0.075 4.075 25 N -0.200 5.200 26 H 0.107 0.893 27 H 0.132 0.868 28 H 0.111 0.889 29 H 0.106 0.894 30 H 0.036 0.964 31 H 0.024 0.976 32 H -0.016 1.016 33 H 0.073 0.927 34 H 0.107 0.893 35 H 0.046 0.954 36 H 0.201 0.799 37 H 0.173 0.827 38 H 0.158 0.842 39 H 0.077 0.923 40 H 0.101 0.899 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.113 0.887 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -22.636 19.264 0.262 29.725 hybrid contribution 2.094 -1.016 -0.695 2.429 sum -20.542 18.248 -0.433 27.480 Atomic orbital electron populations 1.23750 0.94868 1.01957 1.00589 1.22836 0.96295 0.97757 0.99822 1.21276 0.95491 0.96737 0.91311 1.62080 1.16815 1.08831 1.37699 1.19420 0.85653 0.90918 0.95578 1.21390 1.05371 1.35411 0.93737 0.91788 1.25916 0.98082 0.95343 1.00181 1.70088 1.20506 1.39011 1.27953 0.85433 0.77430 0.78700 0.79037 1.19507 1.20893 1.18866 1.20387 0.92054 0.86961 0.99590 1.19991 0.97783 0.99400 0.89338 1.27019 1.02510 1.07901 1.01225 1.83267 1.20886 1.46914 1.06276 1.26635 0.98515 1.01946 0.95801 1.20438 0.89281 0.97054 1.03325 1.20729 0.83653 0.88273 0.77775 1.90769 1.80093 1.20703 1.53682 1.47837 1.18509 1.13573 1.55473 1.21761 0.88866 0.94151 1.01767 1.22171 1.05156 0.79019 1.01169 1.65954 1.04235 1.10449 1.39356 0.89261 0.86775 0.88851 0.89385 0.96373 0.97611 1.01622 0.92681 0.89303 0.95359 0.79927 0.82654 0.84216 0.92328 0.89911 0.90851 0.91432 0.88711 0.88799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.42 14.32 67.77 0.97 -5.45 16 2 C -0.15 -6.31 9.34 25.64 0.24 -6.07 16 3 C 0.08 3.58 5.29 85.56 0.45 4.04 16 4 N -0.53 -25.92 4.36 -909.96 -3.97 -29.89 16 5 C 0.21 11.94 4.55 85.56 0.39 12.33 16 6 C -0.52 -30.47 8.38 25.60 0.21 -30.26 16 7 H 0.06 3.65 7.70 -2.91 -0.02 3.63 16 8 C 0.00 0.16 5.46 84.65 0.46 0.62 16 9 N -0.94 -57.71 13.29 21.45 0.28 -57.43 16 10 Si 0.97 45.15 29.54 68.60 2.03 47.17 16 11 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 13 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 14 C 0.14 6.16 5.25 85.56 0.45 6.61 16 15 C 0.07 2.48 5.64 41.53 0.23 2.72 16 16 C -0.25 -8.02 11.11 66.78 0.74 -7.28 16 17 S 0.17 4.24 23.18 -56.49 -1.31 2.93 16 18 C 0.05 1.33 5.88 88.52 0.52 1.85 16 19 C -0.06 -0.98 4.83 29.10 0.14 -0.83 16 20 C 0.51 11.12 7.67 87.66 0.67 11.80 16 21 O -0.57 -18.80 15.36 -3.04 -0.05 -18.85 16 22 N -0.62 -8.91 3.27 -871.89 -2.85 -11.76 16 23 C 0.08 1.04 10.69 127.77 1.37 2.41 16 24 C 0.07 0.30 10.29 127.77 1.31 1.62 16 25 N -0.48 -16.77 8.88 -179.40 -1.59 -18.36 16 26 H 0.09 3.43 7.84 -2.91 -0.02 3.41 16 27 H 0.11 3.59 8.06 -2.91 -0.02 3.56 16 28 H 0.09 4.17 7.28 -2.91 -0.02 4.15 16 29 H 0.09 3.88 5.28 -2.39 -0.01 3.87 16 30 H 0.02 0.84 8.00 -2.39 -0.02 0.83 16 31 H 0.01 0.36 6.86 -2.39 -0.02 0.34 16 32 H -0.03 -2.09 8.06 -2.38 -0.02 -2.11 16 33 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 34 H 0.09 4.00 7.14 -2.39 -0.02 3.98 16 35 H 0.03 1.26 8.12 -2.39 -0.02 1.24 16 36 H 0.18 5.57 8.06 -2.91 -0.02 5.54 16 37 H 0.16 1.17 7.40 -2.39 -0.02 1.15 16 38 H 0.14 1.86 8.11 -2.39 -0.02 1.84 16 39 H 0.06 1.18 6.90 -2.39 -0.02 1.17 16 40 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 43 H 0.09 0.08 8.07 -2.39 -0.02 0.07 16 44 H 0.09 0.07 6.44 -2.39 -0.02 0.05 16 Total: -1.00 -79.45 379.95 1.69 -77.76 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: 0.99 Total: 14.34 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: 8.17 Total: -5.92 kcal Atomic # 7 Polarization: -109.31 SS G_CDS: -8.13 Total: -117.44 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.05 Total: -18.85 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Atomic # 16 Polarization: 4.24 SS G_CDS: -1.31 Total: 2.93 kcal Total: -79.45 1.69 -77.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292137738.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.760 kcal (2) G-P(sol) polarization free energy of solvation -79.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds