Wall clock time and date at job start Tue Mar 31 2020 14:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35995 * 117.00124 * 2 1 4 4 C 1.38569 * 120.07197 * 0.02562 * 3 2 1 5 5 C 1.38236 * 119.99808 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.92780 * 179.97438 * 5 4 3 7 7 N 1.46498 * 109.46769 * 90.00100 * 6 5 4 8 8 C 1.34777 * 119.99828 * 179.72341 * 7 6 5 9 9 O 1.21283 * 120.00222 * 0.28168 * 8 7 6 10 10 C 1.50703 * 120.00290 * 180.27728 * 8 7 6 11 11 C 1.52990 * 109.47398 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.47398 * 180.02562 * 11 10 8 13 13 H 1.08001 * 119.99463 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00445 * 180.02562 * 12 11 10 15 15 N 1.31524 * 120.00004 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00395 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.46744 * 89.99968 * 16 14 12 18 18 H 1.48501 * 109.47447 * 209.99968 * 16 14 12 19 19 H 1.48499 * 109.46902 * 330.00308 * 16 14 12 20 20 C 1.38258 * 120.14919 * 0.28047 * 5 4 3 21 21 C 1.38244 * 120.14309 * 359.44412 * 20 5 4 22 22 C 1.38566 * 119.99897 * 0.55108 * 21 20 5 23 23 O 1.35994 * 120.07374 * 179.70229 * 22 21 20 24 24 C 1.42893 * 117.00139 * 0.02614 * 23 22 21 25 25 C 1.52997 * 109.47462 * 179.97438 * 24 23 22 26 26 O 1.42900 * 109.47301 * 64.99889 * 25 24 23 27 27 H 1.08994 * 109.46980 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46799 * 299.99833 * 1 2 3 29 29 H 1.09004 * 109.46890 * 59.99836 * 1 2 3 30 30 H 1.08000 * 120.00167 * 359.97438 * 4 3 2 31 31 H 1.09004 * 109.47210 * 330.00458 * 6 5 4 32 32 H 1.08994 * 109.47121 * 210.00428 * 6 5 4 33 33 H 0.97001 * 120.00384 * 0.02562 * 7 6 5 34 34 H 1.08998 * 109.46954 * 300.00581 * 10 8 7 35 35 H 1.09002 * 109.46946 * 59.99717 * 10 8 7 36 36 H 1.08998 * 109.47508 * 300.00200 * 11 10 8 37 37 H 1.09011 * 109.47182 * 60.00188 * 11 10 8 38 38 H 0.96991 * 119.99897 * 179.97438 * 15 14 12 39 39 H 1.07995 * 119.93015 * 179.70134 * 20 5 4 40 40 H 1.07997 * 120.00420 * 180.25272 * 21 20 5 41 41 H 1.09006 * 109.46914 * 299.99704 * 24 23 22 42 42 H 1.09001 * 109.47203 * 59.99775 * 24 23 22 43 43 H 1.09000 * 109.47345 * 184.99650 * 25 24 23 44 44 H 1.09003 * 109.47221 * 304.99772 * 25 24 23 45 45 H 0.96705 * 114.00484 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2933 2.3748 0.0005 5 6 1.9224 3.6057 0.0011 6 6 1.1017 4.8696 0.0011 7 7 0.8354 5.2788 1.3823 8 6 0.1184 6.3931 1.6286 9 8 -0.3106 7.0543 0.7068 10 6 -0.1504 6.8175 3.0494 11 6 -0.9794 8.1034 3.0495 12 6 -1.2477 8.5281 4.4703 13 1 -0.8654 7.9395 5.2912 14 6 -1.9819 9.6675 4.7223 15 7 -2.4479 10.3841 3.7227 16 14 -2.3150 10.1936 6.4835 17 1 -1.2267 11.0921 6.9459 18 1 -3.6123 10.9134 6.5482 19 1 -2.3706 8.9936 7.3564 20 6 3.3030 3.6798 -0.0048 21 6 4.0604 2.5233 0.0004 22 6 3.4360 1.2863 0.0000 23 8 4.1796 0.1476 -0.0011 24 6 5.6003 0.3005 -0.0010 25 6 6.2618 -1.0790 -0.0016 26 8 5.9543 -1.7543 -1.2229 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 0.2147 2.3197 0.0005 31 1 0.1576 4.6898 -0.5131 32 1 1.6504 5.6591 -0.5124 33 1 1.1787 4.7501 2.1196 34 1 -0.7006 6.0309 3.5657 35 1 0.7957 6.9947 3.5609 36 1 -0.4296 8.8902 2.5331 37 1 -1.9257 7.9257 2.5382 38 1 -2.9647 11.1854 3.9000 39 1 3.7909 4.6433 -0.0092 40 1 5.1387 2.5839 -0.0001 41 1 5.9065 0.8510 -0.8907 42 1 5.9066 0.8496 0.8894 43 1 7.3420 -0.9641 0.0879 44 1 5.8874 -1.6618 0.8400 45 1 6.3417 -2.6376 -1.2923 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292537936.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:08 Heat of formation + Delta-G solvation = -174.989258 kcal Electronic energy + Delta-G solvation = -26134.274084 eV Core-core repulsion = 22116.165635 eV Total energy + Delta-G solvation = -4018.108448 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.68098 -40.62789 -39.63451 -38.43967 -37.46968 -35.68513 -35.42611 -33.09276 -31.97885 -31.47486 -30.39969 -28.61174 -27.82302 -26.28134 -24.50965 -23.56087 -22.72944 -22.14641 -21.20572 -19.63089 -18.85376 -18.60434 -18.20272 -17.73865 -17.36417 -17.03736 -16.86107 -16.51959 -16.38891 -16.21674 -15.87699 -15.47043 -15.22117 -15.01075 -14.87668 -14.53361 -14.29590 -14.17841 -13.79771 -13.50917 -13.23957 -13.22064 -12.95500 -12.79667 -12.59390 -12.46640 -12.14275 -12.11067 -12.00709 -11.90133 -11.89712 -11.62183 -11.29043 -10.98538 -10.76799 -10.55633 -10.08219 -9.76891 -8.84857 -8.16673 -6.30615 0.15238 0.32030 1.42964 1.45674 1.56599 1.73461 2.17219 2.24275 2.32871 2.44821 2.79321 3.16203 3.33033 3.56159 3.74624 3.95693 4.01572 4.10127 4.14648 4.18048 4.29414 4.31243 4.37410 4.45262 4.52133 4.52617 4.57769 4.61544 4.66733 4.72310 4.74282 4.79405 5.03533 5.10893 5.20518 5.43232 5.51714 5.52748 5.62314 5.65580 5.87319 6.07577 6.19334 6.56883 6.61994 6.87972 6.89177 7.35260 7.39711 8.95887 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.022003 B = 0.001923 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.249210 B =14556.468914 C =14785.729241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.329 6.329 3 C 0.079 3.921 4 C -0.152 4.152 5 C -0.104 4.104 6 C 0.166 3.834 7 N -0.714 5.714 8 C 0.513 3.487 9 O -0.588 6.588 10 C -0.119 4.119 11 C 0.041 3.959 12 C -0.543 4.543 13 H 0.076 0.924 14 C -0.008 4.008 15 N -0.937 5.937 16 Si 0.974 3.026 17 H -0.272 1.272 18 H -0.286 1.286 19 H -0.256 1.256 20 C -0.093 4.093 21 C -0.170 4.170 22 C 0.094 3.906 23 O -0.320 6.320 24 C 0.044 3.956 25 C 0.076 3.924 26 O -0.596 6.596 27 H 0.117 0.883 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.145 0.855 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.414 0.586 34 H 0.103 0.897 35 H 0.105 0.895 36 H -0.017 1.017 37 H -0.017 1.017 38 H 0.262 0.738 39 H 0.146 0.854 40 H 0.162 0.838 41 H 0.071 0.929 42 H 0.100 0.900 43 H 0.100 0.900 44 H 0.059 0.941 45 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.365 -27.684 -6.652 34.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.243 6.243 3 C 0.033 3.967 4 C -0.171 4.171 5 C -0.105 4.105 6 C 0.043 3.957 7 N -0.367 5.367 8 C 0.301 3.699 9 O -0.468 6.468 10 C -0.159 4.159 11 C 0.003 3.997 12 C -0.581 4.581 13 H 0.094 0.906 14 C -0.205 4.205 15 N -0.577 5.577 16 Si 0.798 3.202 17 H -0.197 1.197 18 H -0.212 1.212 19 H -0.180 1.180 20 C -0.112 4.112 21 C -0.189 4.189 22 C 0.048 3.952 23 O -0.235 6.235 24 C -0.031 4.031 25 C -0.001 4.001 26 O -0.405 6.405 27 H 0.136 0.864 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.163 0.837 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.251 0.749 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.002 0.998 37 H 0.001 0.999 38 H 0.071 0.929 39 H 0.163 0.837 40 H 0.179 0.821 41 H 0.089 0.911 42 H 0.118 0.882 43 H 0.118 0.882 44 H 0.077 0.923 45 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 18.667 -26.941 -7.475 33.617 hybrid contribution -0.226 0.212 0.781 0.840 sum 18.441 -26.729 -6.694 33.156 Atomic orbital electron populations 1.23316 0.76792 1.05449 1.02050 1.86144 1.22918 1.26036 1.89194 1.18444 0.89653 0.85492 1.03088 1.21083 1.00642 0.90524 1.04892 1.19444 0.94098 0.92975 1.03995 1.20062 0.98612 0.93352 0.83638 1.45994 1.55209 1.26574 1.08970 1.21322 0.76522 0.79790 0.92243 1.90661 1.52780 1.55318 1.48074 1.21636 1.02810 0.99827 0.91624 1.18701 0.93554 0.91845 0.95574 1.21724 1.33604 1.09572 0.93168 0.90621 1.26140 0.95490 0.96686 1.02190 1.70181 1.37070 1.16890 1.33593 0.85318 0.77402 0.78742 0.78746 1.19715 1.21219 1.17963 1.21031 0.92441 0.99065 0.98670 1.21296 1.01656 0.89954 1.05967 1.18569 0.88453 0.86832 1.01385 1.86204 1.19876 1.28626 1.88749 1.23264 0.77570 0.99008 1.03240 1.22352 0.99398 0.91420 0.86959 1.86521 1.78837 1.35581 1.39565 0.86434 0.91901 0.92038 0.83713 0.91669 0.91062 0.74903 0.87859 0.87720 0.99838 0.99884 0.92891 0.83662 0.82095 0.91057 0.88211 0.88188 0.92315 0.75116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.33 -7.59 10.28 -79.63 -0.82 -8.41 16 3 C 0.08 1.79 6.70 22.57 0.15 1.94 16 4 C -0.15 -3.12 8.69 22.35 0.19 -2.92 16 5 C -0.10 -2.12 5.25 -19.86 -0.10 -2.22 16 6 C 0.17 4.10 5.80 85.63 0.50 4.60 16 7 N -0.71 -19.32 5.55 -466.79 -2.59 -21.91 16 8 C 0.51 19.73 7.83 87.66 0.69 20.42 16 9 O -0.59 -28.84 15.98 -3.04 -0.05 -28.89 16 10 C -0.12 -4.78 5.64 29.85 0.17 -4.61 16 11 C 0.04 2.29 4.26 29.85 0.13 2.41 16 12 C -0.54 -30.99 9.11 25.60 0.23 -30.75 16 13 H 0.08 3.92 7.74 -2.91 -0.02 3.90 16 14 C -0.01 -0.45 5.46 84.65 0.46 0.01 16 15 N -0.94 -59.68 13.29 21.45 0.28 -59.39 16 16 Si 0.97 44.39 29.54 68.60 2.03 46.42 16 17 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 18 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 19 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 20 C -0.09 -1.64 9.69 22.28 0.22 -1.42 16 21 C -0.17 -2.84 9.04 22.35 0.20 -2.64 16 22 C 0.09 2.01 6.70 22.57 0.15 2.16 16 23 O -0.32 -6.96 9.89 -73.43 -0.73 -7.69 16 24 C 0.04 0.55 5.12 71.98 0.37 0.92 16 25 C 0.08 0.71 7.43 71.98 0.53 1.24 16 26 O -0.60 -8.22 13.62 -144.34 -1.97 -10.19 16 27 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.06 0.84 7.66 -2.39 -0.02 0.82 16 29 H 0.06 0.82 7.66 -2.38 -0.02 0.80 16 30 H 0.15 2.63 6.30 -2.91 -0.02 2.61 16 31 H 0.06 1.72 8.08 -2.38 -0.02 1.70 16 32 H 0.07 1.84 8.08 -2.39 -0.02 1.82 16 33 H 0.41 8.71 8.46 -92.71 -0.78 7.93 16 34 H 0.10 3.64 8.14 -2.39 -0.02 3.62 16 35 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 36 H -0.02 -1.06 8.10 -2.39 -0.02 -1.08 16 37 H -0.02 -1.09 8.10 -2.38 -0.02 -1.11 16 38 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 39 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 40 H 0.16 1.72 6.30 -2.91 -0.02 1.70 16 41 H 0.07 0.85 7.66 -2.38 -0.02 0.83 16 42 H 0.10 0.74 7.66 -2.39 -0.02 0.73 16 43 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 44 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.40 1.57 9.12 -74.05 -0.68 0.90 16 Total: -1.00 -86.06 384.01 0.72 -85.34 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -0.44 Total: 14.20 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: 5.00 Total: -9.47 kcal Atomic # 7 Polarization: -79.00 SS G_CDS: -2.30 Total: -81.30 kcal Atomic # 8 Polarization: -51.62 SS G_CDS: -3.56 Total: -55.18 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -86.06 0.72 -85.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292537936.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.651 kcal (2) G-P(sol) polarization free energy of solvation -86.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds