Wall clock time and date at job start Tue Mar 31 2020 14:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00032 * 2 1 4 4 C 1.53002 * 109.47548 * 180.02562 * 3 2 1 5 5 O 1.42903 * 109.46978 * 65.00056 * 4 3 2 6 6 C 1.35986 * 116.99739 * 180.02562 * 5 4 3 7 7 C 1.38497 * 120.04010 * 359.72146 * 6 5 4 8 8 C 1.38814 * 119.93064 * 179.77028 * 7 6 5 9 9 N 1.40108 * 119.99429 * 180.27444 * 8 7 6 10 10 C 1.34775 * 119.99933 * 213.56731 * 9 8 7 11 11 O 1.21294 * 119.99919 * 5.27360 * 10 9 8 12 12 C 1.50699 * 120.00159 * 185.27633 * 10 9 8 13 13 C 1.52999 * 109.47155 * 180.02562 * 12 10 9 14 14 C 1.50699 * 109.47155 * 179.97438 * 13 12 10 15 15 H 1.08004 * 119.99983 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00361 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00568 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 119.99741 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47327 * 89.99575 * 18 16 14 20 20 H 1.48500 * 109.47177 * 210.00174 * 18 16 14 21 21 H 1.48502 * 109.47129 * 329.99548 * 18 16 14 22 22 C 1.38842 * 120.00733 * 0.50691 * 8 7 6 23 23 C 1.38184 * 120.07437 * 359.74419 * 22 8 7 24 24 C 1.38553 * 120.06940 * 0.02562 * 23 22 8 25 25 O 1.36056 * 120.00356 * 179.97438 * 24 23 22 26 26 C 1.42896 * 117.00395 * 0.02562 * 25 24 23 27 27 H 1.08999 * 109.46757 * 299.99844 * 1 2 3 28 28 H 1.09000 * 109.47408 * 59.99677 * 1 2 3 29 29 H 1.09005 * 109.47029 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47309 * 59.99898 * 3 2 1 31 31 H 1.09000 * 109.47219 * 300.00417 * 3 2 1 32 32 H 1.08996 * 109.47668 * 185.00002 * 4 3 2 33 33 H 1.09000 * 109.46932 * 305.00296 * 4 3 2 34 34 H 1.07999 * 120.03437 * 0.02650 * 7 6 5 35 35 H 0.96992 * 120.00292 * 33.56996 * 9 8 7 36 36 H 1.08994 * 109.46984 * 299.99852 * 12 10 9 37 37 H 1.08999 * 109.46948 * 59.99796 * 12 10 9 38 38 H 1.09002 * 109.47334 * 299.99763 * 13 12 10 39 39 H 1.08999 * 109.47413 * 60.00014 * 13 12 10 40 40 H 0.96996 * 120.00914 * 180.02562 * 17 16 14 41 41 H 1.07999 * 119.96177 * 179.72159 * 22 8 7 42 42 H 1.08001 * 119.96497 * 179.97438 * 23 22 8 43 43 H 1.08999 * 109.46936 * 59.99510 * 26 25 24 44 44 H 1.08992 * 109.47842 * 179.97438 * 26 25 24 45 45 H 1.09003 * 109.46735 * 300.00384 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 8 3.9649 0.5797 -1.2220 6 6 5.3028 0.3979 -1.3838 7 6 6.1820 0.7983 -0.3914 8 6 7.5469 0.6073 -0.5569 9 7 8.4370 1.0066 0.4486 10 6 9.6610 1.4664 0.1214 11 8 9.9577 1.6249 -1.0439 12 6 10.6608 1.7836 1.2035 13 6 11.9590 2.2845 0.5673 14 6 12.9586 2.6022 1.6493 15 1 12.6943 2.4615 2.6870 16 6 14.2107 3.0727 1.3147 17 7 15.0829 3.3505 2.2589 18 14 14.6677 3.3169 -0.4800 19 1 14.3101 4.6960 -0.8987 20 1 16.1283 3.1106 -0.6514 21 1 13.9281 2.3381 -1.3168 22 6 8.0304 0.0248 -1.7208 23 6 7.1538 -0.3701 -2.7134 24 6 5.7905 -0.1852 -2.5495 25 8 4.9287 -0.5741 -3.5278 26 6 5.4986 -1.1664 -4.6967 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6886 1.8463 0.8899 31 1 1.6886 1.8464 -0.8899 32 1 3.9786 2.1765 0.0889 33 1 3.8515 0.5682 0.8409 34 1 5.8057 1.2550 0.5120 35 1 8.1725 0.9522 1.3802 36 1 10.2557 2.5557 1.8575 37 1 10.8641 0.8845 1.7852 38 1 12.3644 1.5127 -0.0870 39 1 11.7554 3.1837 -0.0141 40 1 15.9636 3.6818 2.0236 41 1 9.0928 -0.1194 -1.8507 42 1 7.5319 -0.8226 -3.6182 43 1 6.0492 -2.0647 -4.4173 44 1 4.7042 -1.4300 -5.3948 45 1 6.1775 -0.4566 -5.1695 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292614653.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:53 Heat of formation + Delta-G solvation = -129.162626 kcal Electronic energy + Delta-G solvation = -26568.309101 eV Core-core repulsion = 22552.187844 eV Total energy + Delta-G solvation = -4016.121256 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.87084 -39.64566 -38.87910 -37.88118 -36.87354 -34.11152 -33.55824 -31.48624 -31.23699 -30.08202 -29.05967 -27.26843 -26.72732 -25.93713 -23.87928 -22.89151 -21.76289 -21.07732 -19.80224 -18.77173 -17.72109 -17.53681 -17.20062 -16.72414 -16.34112 -16.00354 -15.86867 -15.66776 -15.43766 -15.16218 -14.99997 -14.69809 -14.13378 -14.10292 -13.56754 -13.22508 -13.08721 -12.77667 -12.67808 -12.58798 -12.50096 -12.23078 -11.81862 -11.56991 -11.47511 -11.46063 -11.20212 -11.14332 -10.99298 -10.22989 -10.11658 -10.10295 -9.83446 -9.77100 -9.33143 -9.22782 -8.66926 -8.54325 -7.52811 -6.06317 -4.05636 1.15912 1.37180 2.91072 2.93311 3.14202 3.29786 3.33757 3.35467 3.42336 3.52194 3.72087 4.47626 4.47704 4.66864 4.69030 4.82323 4.84613 4.92713 4.98646 5.00922 5.03115 5.09093 5.14905 5.19791 5.25347 5.28973 5.30069 5.31971 5.36393 5.44545 5.73368 5.96369 5.99526 6.26748 6.27027 6.37407 6.60697 6.70437 6.82026 6.93077 7.29765 7.36580 7.47847 7.56902 7.74009 8.40066 8.50123 8.96116 9.56293 11.06349 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.018256 B = 0.002356 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.412928 B =11881.946164 C =13150.604319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.064 3.936 4 C 0.058 3.942 5 O -0.295 6.295 6 C 0.121 3.879 7 C -0.206 4.206 8 C 0.162 3.838 9 N -0.683 5.683 10 C 0.510 3.490 11 O -0.518 6.518 12 C -0.121 4.121 13 C 0.001 3.999 14 C -0.526 4.526 15 H 0.073 0.927 16 C 0.069 3.931 17 N -0.902 5.902 18 Si 0.877 3.123 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.261 1.261 22 C -0.119 4.119 23 C -0.150 4.150 24 C 0.076 3.924 25 O -0.308 6.308 26 C 0.027 3.973 27 H 0.040 0.960 28 H 0.042 0.958 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.136 0.864 35 H 0.410 0.590 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.024 0.976 39 H 0.020 0.980 40 H 0.264 0.736 41 H 0.141 0.859 42 H 0.137 0.863 43 H 0.053 0.947 44 H 0.097 0.903 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.810 -7.871 -6.538 30.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C -0.013 4.013 4 C -0.017 4.017 5 O -0.208 6.208 6 C 0.075 3.925 7 C -0.227 4.227 8 C 0.067 3.933 9 N -0.329 5.329 10 C 0.300 3.700 11 O -0.392 6.392 12 C -0.161 4.161 13 C -0.037 4.037 14 C -0.564 4.564 15 H 0.091 0.909 16 C -0.132 4.132 17 N -0.541 5.541 18 Si 0.704 3.296 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.185 1.185 22 C -0.139 4.139 23 C -0.169 4.169 24 C 0.031 3.969 25 O -0.222 6.222 26 C -0.068 4.068 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.154 0.846 35 H 0.245 0.755 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.043 0.957 39 H 0.038 0.962 40 H 0.073 0.927 41 H 0.159 0.841 42 H 0.155 0.845 43 H 0.072 0.928 44 H 0.115 0.885 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -28.583 -7.873 -7.451 30.570 hybrid contribution 0.325 0.478 -0.260 0.634 sum -28.258 -7.395 -7.711 30.210 Atomic orbital electron populations 1.22757 0.80893 1.02974 0.99923 1.87980 1.19753 1.27085 1.95397 1.22561 0.91567 0.85777 1.01387 1.22847 0.93720 0.98323 0.86828 1.86222 1.18991 1.77117 1.38500 1.17815 0.82880 0.99297 0.92558 1.20706 0.92200 1.09002 1.00840 1.17429 0.88376 0.96560 0.90901 1.43882 1.14919 1.65102 1.08979 1.21804 0.81574 0.74777 0.91884 1.90673 1.77427 1.50288 1.20831 1.21710 0.95419 1.02910 0.96037 1.19387 0.90913 0.96758 0.96626 1.21084 0.97114 1.44352 0.93885 0.90871 1.24971 0.96271 0.94620 0.97356 1.69901 1.06426 1.45207 1.32541 0.86798 0.77404 0.79387 0.85971 1.20230 1.21409 1.18547 1.20940 1.01040 0.98874 0.93095 1.20944 0.90695 1.04305 1.00962 1.18147 0.88668 1.01384 0.88740 1.86158 1.33607 1.75883 1.26547 1.23029 1.00314 0.97351 0.86144 0.94098 0.93940 0.89495 0.91103 0.92033 0.90389 0.91053 0.84581 0.75470 0.89277 0.89080 0.95718 0.96175 0.92665 0.84088 0.84539 0.92811 0.88472 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.31 16 2 O -0.38 -3.77 10.67 -40.08 -0.43 -4.20 16 3 C 0.06 0.48 6.32 37.16 0.23 0.72 16 4 C 0.06 0.51 5.12 37.16 0.19 0.70 16 5 O -0.29 -3.76 9.88 -40.73 -0.40 -4.16 16 6 C 0.12 1.61 6.70 -39.14 -0.26 1.34 16 7 C -0.21 -2.50 8.95 -39.27 -0.35 -2.86 16 8 C 0.16 2.28 6.28 -83.64 -0.53 1.75 16 9 N -0.68 -9.21 5.35 -9.84 -0.05 -9.26 16 10 C 0.51 8.92 7.57 -10.99 -0.08 8.84 16 11 O -0.52 -10.97 13.67 5.54 0.08 -10.90 16 12 C -0.12 -2.23 5.64 -27.88 -0.16 -2.38 16 13 C 0.00 0.03 3.33 -27.88 -0.09 -0.07 16 14 C -0.53 -14.78 9.66 -34.44 -0.33 -15.11 16 15 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 16 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 17 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 18 Si 0.88 22.32 27.47 -169.99 -4.67 17.65 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.26 -6.59 6.54 56.52 0.37 -6.22 16 22 C -0.12 -1.77 8.65 -39.38 -0.34 -2.11 16 23 C -0.15 -1.95 9.03 -39.48 -0.36 -2.30 16 24 C 0.08 1.04 6.70 -39.12 -0.26 0.77 16 25 O -0.31 -3.98 10.28 -34.52 -0.35 -4.33 16 26 C 0.03 0.23 9.81 101.05 0.99 1.22 16 27 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.54 7.65 -51.93 -0.40 0.15 16 33 H 0.07 0.58 7.67 -51.93 -0.40 0.18 16 34 H 0.14 1.27 6.29 -52.49 -0.33 0.94 16 35 H 0.41 4.04 8.82 -40.82 -0.36 3.68 16 36 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 38 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 39 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 40 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 41 H 0.14 2.31 6.41 -52.49 -0.34 1.97 16 42 H 0.14 1.44 6.29 -52.49 -0.33 1.11 16 43 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 44 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 LS Contribution 376.83 15.07 5.68 5.68 Total: -1.00 -36.49 376.83 -6.39 -42.88 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -6.68 Total: -0.23 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: -0.33 Total: -6.24 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: 0.72 Total: -36.15 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -1.11 Total: -23.58 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.67 Total: 17.65 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.49 -6.39 -42.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292614653.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.287 kcal (2) G-P(sol) polarization free energy of solvation -36.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds