Wall clock time and date at job start Tue Mar 31 2020 14:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 114.00032 * 2 1 4 4 C 1.53002 * 109.47548 * 180.02562 * 3 2 1 5 5 O 1.42903 * 109.46978 * 65.00056 * 4 3 2 6 6 C 1.35986 * 116.99739 * 180.02562 * 5 4 3 7 7 C 1.38497 * 120.04010 * 359.72146 * 6 5 4 8 8 C 1.38814 * 119.93064 * 179.77028 * 7 6 5 9 9 N 1.40108 * 119.99429 * 180.27444 * 8 7 6 10 10 C 1.34775 * 119.99933 * 213.56731 * 9 8 7 11 11 O 1.21294 * 119.99919 * 5.27360 * 10 9 8 12 12 C 1.50699 * 120.00159 * 185.27633 * 10 9 8 13 13 C 1.52999 * 109.47155 * 180.02562 * 12 10 9 14 14 C 1.50699 * 109.47155 * 179.97438 * 13 12 10 15 15 H 1.08004 * 119.99983 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00361 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00568 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 119.99741 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47327 * 89.99575 * 18 16 14 20 20 H 1.48500 * 109.47177 * 210.00174 * 18 16 14 21 21 H 1.48502 * 109.47129 * 329.99548 * 18 16 14 22 22 C 1.38842 * 120.00733 * 0.50691 * 8 7 6 23 23 C 1.38184 * 120.07437 * 359.74419 * 22 8 7 24 24 C 1.38553 * 120.06940 * 0.02562 * 23 22 8 25 25 O 1.36056 * 120.00356 * 179.97438 * 24 23 22 26 26 C 1.42896 * 117.00395 * 0.02562 * 25 24 23 27 27 H 1.08999 * 109.46757 * 299.99844 * 1 2 3 28 28 H 1.09000 * 109.47408 * 59.99677 * 1 2 3 29 29 H 1.09005 * 109.47029 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47309 * 59.99898 * 3 2 1 31 31 H 1.09000 * 109.47219 * 300.00417 * 3 2 1 32 32 H 1.08996 * 109.47668 * 185.00002 * 4 3 2 33 33 H 1.09000 * 109.46932 * 305.00296 * 4 3 2 34 34 H 1.07999 * 120.03437 * 0.02650 * 7 6 5 35 35 H 0.96992 * 120.00292 * 33.56996 * 9 8 7 36 36 H 1.08994 * 109.46984 * 299.99852 * 12 10 9 37 37 H 1.08999 * 109.46948 * 59.99796 * 12 10 9 38 38 H 1.09002 * 109.47334 * 299.99763 * 13 12 10 39 39 H 1.08999 * 109.47413 * 60.00014 * 13 12 10 40 40 H 0.96996 * 120.00914 * 180.02562 * 17 16 14 41 41 H 1.07999 * 119.96177 * 179.72159 * 22 8 7 42 42 H 1.08001 * 119.96497 * 179.97438 * 23 22 8 43 43 H 1.08999 * 109.46936 * 59.99510 * 26 25 24 44 44 H 1.08992 * 109.47842 * 179.97438 * 26 25 24 45 45 H 1.09003 * 109.46735 * 300.00384 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 8 3.9649 0.5797 -1.2220 6 6 5.3028 0.3979 -1.3838 7 6 6.1820 0.7983 -0.3914 8 6 7.5469 0.6073 -0.5569 9 7 8.4370 1.0066 0.4486 10 6 9.6610 1.4664 0.1214 11 8 9.9577 1.6249 -1.0439 12 6 10.6608 1.7836 1.2035 13 6 11.9590 2.2845 0.5673 14 6 12.9586 2.6022 1.6493 15 1 12.6943 2.4615 2.6870 16 6 14.2107 3.0727 1.3147 17 7 15.0829 3.3505 2.2589 18 14 14.6677 3.3169 -0.4800 19 1 14.3101 4.6960 -0.8987 20 1 16.1283 3.1106 -0.6514 21 1 13.9281 2.3381 -1.3168 22 6 8.0304 0.0248 -1.7208 23 6 7.1538 -0.3701 -2.7134 24 6 5.7905 -0.1852 -2.5495 25 8 4.9287 -0.5741 -3.5278 26 6 5.4986 -1.1664 -4.6967 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6886 1.8463 0.8899 31 1 1.6886 1.8464 -0.8899 32 1 3.9786 2.1765 0.0889 33 1 3.8515 0.5682 0.8409 34 1 5.8057 1.2550 0.5120 35 1 8.1725 0.9522 1.3802 36 1 10.2557 2.5557 1.8575 37 1 10.8641 0.8845 1.7852 38 1 12.3644 1.5127 -0.0870 39 1 11.7554 3.1837 -0.0141 40 1 15.9636 3.6818 2.0236 41 1 9.0928 -0.1194 -1.8507 42 1 7.5319 -0.8226 -3.6182 43 1 6.0492 -2.0647 -4.4173 44 1 4.7042 -1.4300 -5.3948 45 1 6.1775 -0.4566 -5.1695 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292614653.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:51 Heat of formation + Delta-G solvation = -154.897546 kcal Electronic energy + Delta-G solvation = -26569.425051 eV Core-core repulsion = 22552.187844 eV Total energy + Delta-G solvation = -4017.237206 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.90038 -40.83939 -39.68179 -38.59586 -37.92848 -35.55618 -35.27851 -33.33207 -32.05421 -31.05326 -30.02500 -28.40371 -27.45779 -27.20227 -24.62941 -24.23810 -22.76439 -22.45744 -21.19643 -19.72336 -19.26699 -18.67832 -18.11657 -17.81896 -17.29949 -17.18979 -16.79855 -16.56327 -16.35493 -16.22133 -15.93971 -15.87944 -15.67290 -15.13360 -14.88388 -14.64785 -14.56522 -13.85129 -13.75019 -13.71590 -13.40550 -13.21933 -12.97490 -12.91580 -12.49526 -12.34737 -12.22650 -12.11849 -12.06509 -11.97373 -11.84467 -11.76011 -11.39415 -10.99114 -10.77675 -10.67957 -10.64995 -9.64519 -8.56054 -8.30823 -6.33611 0.15786 0.32135 1.33628 1.35992 1.50133 1.60599 1.99554 2.19228 2.35126 2.39136 2.68987 2.82287 3.05057 3.71223 3.83235 3.98006 4.00412 4.11951 4.14855 4.22520 4.34062 4.36737 4.40951 4.42915 4.45991 4.48694 4.51061 4.53961 4.57319 4.71244 4.72888 4.74965 4.87842 4.99317 5.19250 5.25912 5.32743 5.37143 5.44656 5.61393 5.73506 6.06837 6.22024 6.23592 6.45532 6.58886 6.73205 7.17424 7.31725 8.84633 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.018256 B = 0.002356 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.412928 B =11881.946164 C =13150.604319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.061 3.939 4 C 0.047 3.953 5 O -0.313 6.313 6 C 0.112 3.888 7 C -0.192 4.192 8 C 0.145 3.855 9 N -0.660 5.660 10 C 0.516 3.484 11 O -0.560 6.560 12 C -0.113 4.113 13 C 0.003 3.997 14 C -0.528 4.528 15 H 0.052 0.948 16 C 0.013 3.987 17 N -0.943 5.943 18 Si 0.937 3.063 19 H -0.270 1.270 20 H -0.280 1.280 21 H -0.260 1.260 22 C -0.138 4.138 23 C -0.149 4.149 24 C 0.068 3.932 25 O -0.327 6.327 26 C 0.018 3.982 27 H 0.058 0.942 28 H 0.046 0.954 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.060 0.940 32 H 0.098 0.902 33 H 0.078 0.922 34 H 0.167 0.833 35 H 0.429 0.571 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.012 0.988 39 H 0.010 0.990 40 H 0.267 0.733 41 H 0.121 0.879 42 H 0.155 0.845 43 H 0.063 0.937 44 H 0.119 0.881 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.910 -7.906 -6.800 32.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.336 6.336 3 C -0.015 4.015 4 C -0.027 4.027 5 O -0.227 6.227 6 C 0.065 3.935 7 C -0.213 4.213 8 C 0.050 3.950 9 N -0.308 5.308 10 C 0.306 3.694 11 O -0.438 6.438 12 C -0.153 4.153 13 C -0.035 4.035 14 C -0.566 4.566 15 H 0.071 0.929 16 C -0.185 4.185 17 N -0.584 5.584 18 Si 0.762 3.238 19 H -0.195 1.195 20 H -0.205 1.205 21 H -0.184 1.184 22 C -0.159 4.159 23 C -0.169 4.169 24 C 0.022 3.978 25 O -0.241 6.241 26 C -0.077 4.077 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.109 0.891 30 H 0.119 0.881 31 H 0.079 0.921 32 H 0.116 0.884 33 H 0.097 0.903 34 H 0.184 0.816 35 H 0.268 0.732 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.030 0.970 39 H 0.028 0.972 40 H 0.076 0.924 41 H 0.139 0.861 42 H 0.172 0.828 43 H 0.082 0.918 44 H 0.137 0.863 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -30.738 -7.924 -7.683 32.659 hybrid contribution 0.825 0.440 -0.154 0.947 sum -29.913 -7.484 -7.836 31.815 Atomic orbital electron populations 1.22911 0.79412 1.03694 1.00985 1.87926 1.21561 1.28506 1.95654 1.22715 0.90731 0.85287 1.02752 1.23201 0.94697 0.99221 0.85592 1.86216 1.18493 1.77481 1.40514 1.18045 0.83525 0.99152 0.92754 1.20877 0.91021 1.07906 1.01530 1.17536 0.89085 0.97494 0.90871 1.43498 1.13501 1.63661 1.10104 1.21460 0.82491 0.74685 0.90740 1.90667 1.78439 1.52455 1.22205 1.21519 0.93276 1.04234 0.96280 1.19244 0.92826 0.96050 0.95335 1.21423 0.97903 1.43208 0.94045 0.92934 1.25795 0.96571 0.94792 1.01317 1.70014 1.07049 1.46733 1.34559 0.85850 0.77402 0.79479 0.81103 1.19488 1.20544 1.18444 1.20916 1.00338 1.00311 0.94317 1.21066 0.90462 1.04079 1.01248 1.18395 0.88906 1.01254 0.89274 1.86138 1.34392 1.76101 1.27473 1.23321 1.01483 0.97689 0.85173 0.92376 0.93489 0.89081 0.88149 0.92132 0.88383 0.90330 0.81597 0.73203 0.87230 0.87309 0.96999 0.97174 0.92421 0.86107 0.82769 0.91796 0.86295 0.92154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.42 -7.58 10.67 -144.35 -1.54 -9.12 16 3 C 0.06 0.80 6.32 71.98 0.45 1.25 16 4 C 0.05 0.72 5.12 71.98 0.37 1.09 16 5 O -0.31 -7.52 9.88 -73.28 -0.72 -8.24 16 6 C 0.11 2.81 6.70 22.55 0.15 2.96 16 7 C -0.19 -4.27 8.95 22.47 0.20 -4.07 16 8 C 0.14 3.86 6.28 38.10 0.24 4.10 16 9 N -0.66 -16.54 5.35 -303.42 -1.62 -18.16 16 10 C 0.52 17.47 7.57 87.66 0.66 18.14 16 11 O -0.56 -23.64 13.67 -3.07 -0.04 -23.68 16 12 C -0.11 -4.01 5.64 29.85 0.17 -3.84 16 13 C 0.00 0.17 3.33 29.85 0.10 0.27 16 14 C -0.53 -29.76 9.66 25.60 0.25 -29.51 16 15 H 0.05 3.10 7.99 -2.91 -0.02 3.08 16 16 C 0.01 0.76 5.47 84.66 0.46 1.22 16 17 N -0.94 -58.45 13.96 21.45 0.30 -58.15 16 18 Si 0.94 46.23 27.47 68.60 1.88 48.12 16 19 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 20 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 21 H -0.26 -12.70 6.54 99.48 0.65 -12.05 16 22 C -0.14 -4.06 8.65 22.40 0.19 -3.87 16 23 C -0.15 -3.80 9.03 22.33 0.20 -3.60 16 24 C 0.07 1.78 6.70 22.57 0.15 1.93 16 25 O -0.33 -8.13 10.28 -80.23 -0.82 -8.95 16 26 C 0.02 0.28 9.81 113.37 1.11 1.39 16 27 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.10 1.06 7.65 -2.39 -0.02 1.04 16 33 H 0.08 1.07 7.67 -2.39 -0.02 1.05 16 34 H 0.17 2.52 6.29 -2.91 -0.02 2.50 16 35 H 0.43 7.22 8.82 -92.71 -0.82 6.40 16 36 H 0.11 3.42 8.14 -2.39 -0.02 3.41 16 37 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 38 H 0.01 0.59 7.16 -2.39 -0.02 0.57 16 39 H 0.01 0.49 7.53 -2.39 -0.02 0.48 16 40 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 41 H 0.12 4.04 6.41 -2.91 -0.02 4.02 16 42 H 0.15 3.16 6.29 -2.91 -0.02 3.14 16 43 H 0.06 0.86 7.66 -2.39 -0.02 0.84 16 44 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.06 0.86 7.66 -2.39 -0.02 0.84 16 Total: -1.00 -79.73 376.83 3.53 -76.20 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 0.13 Total: 13.01 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: 5.96 Total: -11.02 kcal Atomic # 7 Polarization: -74.99 SS G_CDS: -1.32 Total: -76.32 kcal Atomic # 8 Polarization: -46.86 SS G_CDS: -3.13 Total: -49.99 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.88 Total: 48.12 kcal Total: -79.73 3.53 -76.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292614653.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.698 kcal (2) G-P(sol) polarization free energy of solvation -79.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds