Wall clock time and date at job start Tue Mar 31 2020 13:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47431 * 2 1 4 4 C 1.36945 * 120.00127 * 262.71705 * 3 2 1 5 5 H 1.08000 * 119.99879 * 199.55944 * 4 3 2 6 6 C 1.38815 * 119.99817 * 19.56016 * 4 3 2 7 7 N 1.31622 * 119.99965 * 28.06452 * 6 4 3 8 8 Si 1.86798 * 119.99837 * 208.06903 * 6 4 3 9 9 H 1.48503 * 109.46779 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47303 * 119.99776 * 8 6 4 11 11 H 1.48498 * 109.47018 * 240.00111 * 8 6 4 12 12 C 1.46502 * 120.00201 * 82.71338 * 3 2 1 13 13 H 1.09002 * 109.47042 * 3.69222 * 12 3 2 14 14 C 1.50697 * 109.47364 * 123.68889 * 12 3 2 15 15 O 1.20830 * 119.99781 * 15.85178 * 14 12 3 16 16 O 1.34219 * 120.00364 * 195.84610 * 14 12 3 17 17 C 1.45206 * 117.00348 * 179.97438 * 16 14 12 18 18 C 1.50698 * 109.47225 * 243.69300 * 12 3 2 19 19 C 1.38179 * 119.94414 * 306.41182 * 18 12 3 20 20 C 1.38778 * 120.05135 * 180.23296 * 19 18 12 21 21 O 1.35893 * 120.02675 * 179.79161 * 20 19 18 22 22 C 1.42903 * 117.00273 * 179.72337 * 21 20 19 23 23 C 1.38636 * 119.94603 * 359.51335 * 20 19 18 24 24 C 1.38641 * 119.88825 * 0.25676 * 23 20 19 25 25 O 1.35898 * 120.02201 * 180.02562 * 24 23 20 26 26 C 1.42903 * 117.00354 * 0.02562 * 25 24 23 27 27 C 1.38183 * 119.94461 * 126.18249 * 18 12 3 28 28 H 1.09000 * 109.47324 * 292.45406 * 1 2 3 29 29 H 1.09005 * 109.47055 * 52.45162 * 1 2 3 30 30 H 1.08997 * 109.46893 * 172.45123 * 1 2 3 31 31 H 1.09003 * 109.47273 * 240.00233 * 2 1 3 32 32 H 1.09001 * 109.47185 * 120.00301 * 2 1 3 33 33 H 0.96993 * 119.99608 * 179.97438 * 7 6 4 34 34 H 1.08998 * 109.46990 * 300.00167 * 17 16 14 35 35 H 1.09001 * 109.46605 * 60.00518 * 17 16 14 36 36 H 1.08995 * 109.46937 * 180.02562 * 17 16 14 37 37 H 1.07991 * 119.97624 * 0.02562 * 19 18 12 38 38 H 1.09002 * 109.46755 * 300.00535 * 22 21 20 39 39 H 1.08998 * 109.46728 * 59.99965 * 22 21 20 40 40 H 1.08993 * 109.47098 * 180.02562 * 22 21 20 41 41 H 1.07995 * 120.05622 * 180.23081 * 23 20 19 42 42 H 1.09001 * 109.46781 * 299.99748 * 26 25 24 43 43 H 1.08995 * 109.47021 * 59.99781 * 26 25 24 44 44 H 1.09000 * 109.47022 * 179.97438 * 26 25 24 45 45 H 1.07995 * 119.97173 * 359.97438 * 27 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3884 1.9766 -1.1764 5 1 3.0289 2.8461 -1.1634 6 6 1.9402 1.4626 -2.3855 7 7 0.7949 0.8165 -2.4418 8 14 2.9625 1.6880 -3.9325 9 1 4.1975 2.4444 -3.6038 10 1 3.3277 0.3579 -4.4827 11 1 2.1748 2.4415 -4.9410 12 6 2.1109 2.1255 1.2585 13 1 1.8383 1.4725 2.0876 14 6 3.5228 2.6165 1.4491 15 8 4.2895 2.6285 0.5153 16 8 3.9287 3.0407 2.6561 17 6 5.3020 3.4993 2.7663 18 6 1.1710 3.3026 1.2162 19 6 1.2369 4.2005 0.1679 20 6 0.3756 5.2880 0.1292 21 8 0.4437 6.1731 -0.8998 22 6 -0.4774 7.2654 -0.8780 23 6 -0.5581 5.4676 1.1381 24 6 -0.6253 4.5627 2.1863 25 8 -1.5399 4.7358 3.1764 26 6 -2.4008 5.8717 3.0732 27 6 0.2415 3.4797 2.2232 28 1 -0.3634 0.3925 0.9497 29 1 -0.3633 0.6263 -0.8148 30 1 -0.3633 -1.0187 -0.1350 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 0.4815 0.4577 -3.2867 34 1 5.9786 2.6878 2.4982 35 1 5.4591 4.3411 2.0919 36 1 5.4992 3.8127 3.7914 37 1 1.9613 4.0577 -0.6201 38 1 -1.4973 6.8809 -0.8893 39 1 -0.3212 7.8544 0.0257 40 1 -0.3166 7.8937 -1.7540 41 1 -1.2317 6.3112 1.1078 42 1 -1.8015 6.7822 3.0656 43 1 -2.9770 5.8082 2.1501 44 1 -3.0807 5.8909 3.9249 45 1 0.1893 2.7743 3.0393 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000297706162.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:25 Heat of formation + Delta-G solvation = -86.503341 kcal Electronic energy + Delta-G solvation = -29353.854627 eV Core-core repulsion = 25339.583216 eV Total energy + Delta-G solvation = -4014.271411 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.28359 -39.59363 -38.44966 -37.17078 -35.74733 -35.05532 -31.93360 -30.61224 -29.90617 -28.73790 -27.98675 -27.56471 -26.33888 -25.87068 -23.41082 -21.95347 -21.45200 -20.96074 -19.68172 -18.14684 -17.37031 -16.64054 -16.45934 -15.75791 -15.70068 -15.64226 -15.41208 -15.22745 -15.14863 -14.64534 -14.40009 -13.70309 -13.59800 -13.32780 -12.89995 -12.66410 -12.35254 -12.24366 -11.99895 -11.97834 -11.81169 -11.52558 -11.45605 -11.35954 -11.10001 -10.84948 -10.77775 -10.68370 -10.41175 -10.19104 -10.18582 -10.07431 -9.80000 -9.36327 -9.18196 -8.49653 -8.06555 -7.42794 -6.97238 -5.80856 -3.14304 1.79114 2.06890 3.05666 3.29147 3.42979 3.50802 3.55147 3.58816 3.64135 4.25705 4.54486 5.05755 5.14900 5.18031 5.18347 5.27573 5.30165 5.36220 5.45398 5.47211 5.49209 5.53711 5.57974 5.60298 5.70598 5.79371 5.80739 5.92586 6.15321 6.40822 6.43033 6.68206 6.80789 6.89288 6.98460 7.00877 7.05901 7.12626 7.31285 7.48036 7.54881 7.80589 7.96751 8.20281 8.26954 8.65595 9.17315 9.71041 10.16889 11.18520 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.009723 B = 0.005846 C = 0.005051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2878.972737 B = 4788.762655 C = 5541.756060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.172 3.828 3 N -0.555 5.555 4 C -0.243 4.243 5 H 0.090 0.910 6 C 0.009 3.991 7 N -0.879 5.879 8 Si 0.894 3.106 9 H -0.274 1.274 10 H -0.289 1.289 11 H -0.292 1.292 12 C 0.224 3.776 13 H 0.099 0.901 14 C 0.437 3.563 15 O -0.479 6.479 16 O -0.371 6.371 17 C 0.035 3.965 18 C -0.007 4.007 19 C -0.144 4.144 20 C 0.153 3.847 21 O -0.312 6.312 22 C 0.030 3.970 23 C -0.301 4.301 24 C 0.146 3.854 25 O -0.318 6.318 26 C 0.031 3.969 27 C -0.171 4.171 28 H 0.013 0.987 29 H 0.113 0.887 30 H 0.022 0.978 31 H 0.071 0.929 32 H 0.013 0.987 33 H 0.253 0.747 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.090 0.910 37 H 0.155 0.845 38 H 0.050 0.950 39 H 0.048 0.952 40 H 0.095 0.905 41 H 0.124 0.876 42 H 0.050 0.950 43 H 0.051 0.949 44 H 0.094 0.906 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.034 9.012 10.329 14.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.048 3.952 3 N -0.273 5.273 4 C -0.371 4.371 5 H 0.108 0.892 6 C -0.191 4.191 7 N -0.522 5.522 8 Si 0.723 3.277 9 H -0.199 1.199 10 H -0.216 1.216 11 H -0.219 1.219 12 C 0.111 3.889 13 H 0.117 0.883 14 C 0.276 3.724 15 O -0.362 6.362 16 O -0.288 6.288 17 C -0.059 4.059 18 C -0.011 4.011 19 C -0.163 4.163 20 C 0.108 3.892 21 O -0.225 6.225 22 C -0.065 4.065 23 C -0.321 4.321 24 C 0.101 3.899 25 O -0.232 6.232 26 C -0.065 4.065 27 C -0.190 4.190 28 H 0.032 0.968 29 H 0.131 0.869 30 H 0.041 0.959 31 H 0.089 0.911 32 H 0.032 0.968 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.108 0.892 37 H 0.172 0.828 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.113 0.887 41 H 0.142 0.858 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.113 0.887 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.741 8.756 9.841 13.454 hybrid contribution 0.148 0.525 -1.002 1.141 sum -2.593 9.281 8.839 13.076 Atomic orbital electron populations 1.22522 0.98002 1.00181 1.01588 1.20671 0.93423 0.83015 0.98095 1.44321 1.72767 1.09496 1.00698 1.19442 1.22114 1.13363 0.82217 0.89220 1.24863 0.95753 1.00727 0.97709 1.70091 1.16492 1.40491 1.25086 0.86344 0.80809 0.77421 0.83117 1.19897 1.21572 1.21917 1.18525 0.85965 0.91409 0.92952 0.88329 1.25886 0.92389 0.74228 0.79940 1.90643 1.55437 1.49058 1.41095 1.86597 1.30733 1.75278 1.36182 1.23063 0.81227 0.99497 1.02122 1.19601 0.95855 0.93285 0.92345 1.20810 1.02559 0.92357 1.00560 1.18769 0.94203 0.89964 0.86290 1.86130 1.56612 1.35934 1.43816 1.22948 0.92861 0.88223 1.02486 1.21051 1.06714 1.04840 0.99481 1.18494 0.89714 0.94516 0.87200 1.86041 1.45881 1.46238 1.45056 1.22939 0.93111 0.87732 1.02681 1.20041 0.98575 0.98954 1.01478 0.96786 0.86896 0.95856 0.91050 0.96826 0.93683 0.92601 0.92587 0.89172 0.82780 0.93102 0.93297 0.88684 0.85824 0.93161 0.93054 0.88723 0.85588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.67 9.65 37.16 0.36 -3.31 16 2 C 0.17 3.95 5.53 -4.04 -0.02 3.93 16 3 N -0.56 -13.29 2.39 -168.31 -0.40 -13.70 16 4 C -0.24 -6.42 6.21 -15.05 -0.09 -6.52 16 5 H 0.09 2.49 4.82 -52.49 -0.25 2.23 16 6 C 0.01 0.24 4.64 -17.43 -0.08 0.15 16 7 N -0.88 -23.85 9.00 55.49 0.50 -23.35 16 8 Si 0.89 21.96 29.64 -169.99 -5.04 16.92 16 9 H -0.27 -6.85 7.11 56.52 0.40 -6.44 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 C 0.22 4.68 2.98 -70.24 -0.21 4.47 16 13 H 0.10 1.83 7.61 -51.93 -0.40 1.44 16 14 C 0.44 9.14 6.92 36.00 0.25 9.38 16 15 O -0.48 -11.39 13.73 -18.75 -0.26 -11.64 16 16 O -0.37 -6.63 10.56 -39.23 -0.41 -7.04 16 17 C 0.04 0.50 10.56 101.05 1.07 1.57 16 18 C -0.01 -0.15 4.94 -104.66 -0.52 -0.67 16 19 C -0.14 -3.13 8.54 -39.40 -0.34 -3.47 16 20 C 0.15 2.97 6.68 -39.24 -0.26 2.71 16 21 O -0.31 -5.69 10.50 -19.40 -0.20 -5.89 16 22 C 0.03 0.38 9.81 101.05 0.99 1.37 16 23 C -0.30 -5.08 8.02 -39.29 -0.32 -5.39 16 24 C 0.15 2.53 6.68 -39.24 -0.26 2.26 16 25 O -0.32 -4.85 10.50 -19.42 -0.20 -5.05 16 26 C 0.03 0.32 9.81 101.05 0.99 1.32 16 27 C -0.17 -3.15 9.61 -39.41 -0.38 -3.53 16 28 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.11 2.92 5.68 -51.93 -0.29 2.63 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 1.80 6.69 -51.93 -0.35 1.45 16 32 H 0.01 0.28 8.05 -51.93 -0.42 -0.14 16 33 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 34 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 35 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 36 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.15 3.78 4.94 -52.49 -0.26 3.52 16 38 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 39 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 40 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.12 1.70 4.54 -52.49 -0.24 1.46 16 42 H 0.05 0.47 7.66 -51.93 -0.40 0.08 16 43 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 44 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.13 2.09 7.95 -52.49 -0.42 1.67 16 LS Contribution 364.44 15.07 5.49 5.49 Total: -1.00 -31.14 364.44 -5.66 -36.80 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -6.31 Total: 3.19 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 1.18 Total: 4.28 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.10 Total: -37.05 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -1.08 Total: -29.63 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.04 Total: 16.92 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.14 -5.66 -36.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297706162.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.704 kcal (2) G-P(sol) polarization free energy of solvation -31.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds