Wall clock time and date at job start Tue Mar 31 2020 13:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47431 * 2 1 4 4 C 1.36945 * 120.00127 * 262.71705 * 3 2 1 5 5 H 1.08000 * 119.99879 * 199.55944 * 4 3 2 6 6 C 1.38815 * 119.99817 * 19.56016 * 4 3 2 7 7 N 1.31622 * 119.99965 * 28.06452 * 6 4 3 8 8 Si 1.86798 * 119.99837 * 208.06903 * 6 4 3 9 9 H 1.48503 * 109.46779 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47303 * 119.99776 * 8 6 4 11 11 H 1.48498 * 109.47018 * 240.00111 * 8 6 4 12 12 C 1.46502 * 120.00201 * 82.71338 * 3 2 1 13 13 H 1.09002 * 109.47042 * 3.69222 * 12 3 2 14 14 C 1.50697 * 109.47364 * 123.68889 * 12 3 2 15 15 O 1.20830 * 119.99781 * 15.85178 * 14 12 3 16 16 O 1.34219 * 120.00364 * 195.84610 * 14 12 3 17 17 C 1.45206 * 117.00348 * 179.97438 * 16 14 12 18 18 C 1.50698 * 109.47225 * 243.69300 * 12 3 2 19 19 C 1.38179 * 119.94414 * 306.41182 * 18 12 3 20 20 C 1.38778 * 120.05135 * 180.23296 * 19 18 12 21 21 O 1.35893 * 120.02675 * 179.79161 * 20 19 18 22 22 C 1.42903 * 117.00273 * 179.72337 * 21 20 19 23 23 C 1.38636 * 119.94603 * 359.51335 * 20 19 18 24 24 C 1.38641 * 119.88825 * 0.25676 * 23 20 19 25 25 O 1.35898 * 120.02201 * 180.02562 * 24 23 20 26 26 C 1.42903 * 117.00354 * 0.02562 * 25 24 23 27 27 C 1.38183 * 119.94461 * 126.18249 * 18 12 3 28 28 H 1.09000 * 109.47324 * 292.45406 * 1 2 3 29 29 H 1.09005 * 109.47055 * 52.45162 * 1 2 3 30 30 H 1.08997 * 109.46893 * 172.45123 * 1 2 3 31 31 H 1.09003 * 109.47273 * 240.00233 * 2 1 3 32 32 H 1.09001 * 109.47185 * 120.00301 * 2 1 3 33 33 H 0.96993 * 119.99608 * 179.97438 * 7 6 4 34 34 H 1.08998 * 109.46990 * 300.00167 * 17 16 14 35 35 H 1.09001 * 109.46605 * 60.00518 * 17 16 14 36 36 H 1.08995 * 109.46937 * 180.02562 * 17 16 14 37 37 H 1.07991 * 119.97624 * 0.02562 * 19 18 12 38 38 H 1.09002 * 109.46755 * 300.00535 * 22 21 20 39 39 H 1.08998 * 109.46728 * 59.99965 * 22 21 20 40 40 H 1.08993 * 109.47098 * 180.02562 * 22 21 20 41 41 H 1.07995 * 120.05622 * 180.23081 * 23 20 19 42 42 H 1.09001 * 109.46781 * 299.99748 * 26 25 24 43 43 H 1.08995 * 109.47021 * 59.99781 * 26 25 24 44 44 H 1.09000 * 109.47022 * 179.97438 * 26 25 24 45 45 H 1.07995 * 119.97173 * 359.97438 * 27 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3884 1.9766 -1.1764 5 1 3.0289 2.8461 -1.1634 6 6 1.9402 1.4626 -2.3855 7 7 0.7949 0.8165 -2.4418 8 14 2.9625 1.6880 -3.9325 9 1 4.1975 2.4444 -3.6038 10 1 3.3277 0.3579 -4.4827 11 1 2.1748 2.4415 -4.9410 12 6 2.1109 2.1255 1.2585 13 1 1.8383 1.4725 2.0876 14 6 3.5228 2.6165 1.4491 15 8 4.2895 2.6285 0.5153 16 8 3.9287 3.0407 2.6561 17 6 5.3020 3.4993 2.7663 18 6 1.1710 3.3026 1.2162 19 6 1.2369 4.2005 0.1679 20 6 0.3756 5.2880 0.1292 21 8 0.4437 6.1731 -0.8998 22 6 -0.4774 7.2654 -0.8780 23 6 -0.5581 5.4676 1.1381 24 6 -0.6253 4.5627 2.1863 25 8 -1.5399 4.7358 3.1764 26 6 -2.4008 5.8717 3.0732 27 6 0.2415 3.4797 2.2232 28 1 -0.3634 0.3925 0.9497 29 1 -0.3633 0.6263 -0.8148 30 1 -0.3633 -1.0187 -0.1350 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 0.4815 0.4577 -3.2867 34 1 5.9786 2.6878 2.4982 35 1 5.4591 4.3411 2.0919 36 1 5.4992 3.8127 3.7914 37 1 1.9613 4.0577 -0.6201 38 1 -1.4973 6.8809 -0.8893 39 1 -0.3212 7.8544 0.0257 40 1 -0.3166 7.8937 -1.7540 41 1 -1.2317 6.3112 1.1078 42 1 -1.8015 6.7822 3.0656 43 1 -2.9770 5.8082 2.1501 44 1 -3.0807 5.8909 3.9249 45 1 0.1893 2.7743 3.0393 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000297706162.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:24 Heat of formation + Delta-G solvation = -105.587149 kcal Electronic energy + Delta-G solvation = -29354.682163 eV Core-core repulsion = 25339.583216 eV Total energy + Delta-G solvation = -4015.098947 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.75105 -41.07206 -39.68167 -38.72048 -37.26830 -36.73593 -33.70158 -32.34700 -31.26134 -30.35891 -29.35432 -28.66668 -27.54037 -27.26853 -25.23484 -23.39406 -22.98930 -22.58199 -21.25136 -19.52274 -19.11920 -18.15156 -17.81585 -17.35133 -17.17738 -16.84464 -16.81771 -16.64996 -16.35075 -16.31723 -15.62611 -15.44356 -15.32265 -14.80352 -14.30124 -14.09394 -13.82593 -13.74654 -13.53922 -13.41115 -13.23728 -13.04839 -12.83223 -12.71986 -12.53602 -12.40971 -12.39428 -12.17432 -12.06656 -11.99296 -11.67420 -11.61313 -11.44363 -11.16032 -10.92740 -10.46852 -9.49436 -8.91119 -8.79682 -7.79514 -5.14662 0.34983 0.61633 1.40327 1.43405 1.46678 1.57765 1.86469 2.36904 2.45046 2.53372 2.83311 3.30529 3.61333 3.80972 4.04076 4.16013 4.18431 4.23213 4.31439 4.36473 4.38773 4.38871 4.40791 4.43305 4.48222 4.64335 4.67097 4.68551 4.73603 4.75605 4.93446 5.04498 5.19345 5.26231 5.29292 5.38384 5.49605 5.62492 5.68925 5.75002 5.84994 6.29431 6.31080 6.37855 6.64307 7.03261 7.22118 7.79158 8.21999 9.17931 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.009723 B = 0.005846 C = 0.005051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2878.972737 B = 4788.762655 C = 5541.756060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.173 3.827 3 N -0.570 5.570 4 C -0.229 4.229 5 H 0.069 0.931 6 C -0.034 4.034 7 N -0.897 5.897 8 Si 0.934 3.066 9 H -0.285 1.285 10 H -0.288 1.288 11 H -0.295 1.295 12 C 0.219 3.781 13 H 0.125 0.875 14 C 0.444 3.556 15 O -0.516 6.516 16 O -0.366 6.366 17 C 0.029 3.971 18 C -0.013 4.013 19 C -0.178 4.178 20 C 0.146 3.854 21 O -0.340 6.340 22 C 0.019 3.981 23 C -0.290 4.290 24 C 0.155 3.845 25 O -0.325 6.325 26 C 0.017 3.983 27 C -0.179 4.179 28 H 0.027 0.973 29 H 0.078 0.922 30 H 0.035 0.965 31 H 0.041 0.959 32 H 0.042 0.958 33 H 0.246 0.754 34 H 0.056 0.944 35 H 0.049 0.951 36 H 0.135 0.865 37 H 0.116 0.884 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.117 0.883 41 H 0.159 0.841 42 H 0.065 0.935 43 H 0.058 0.942 44 H 0.125 0.875 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.491 10.529 13.126 17.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.049 3.951 3 N -0.289 5.289 4 C -0.359 4.359 5 H 0.087 0.913 6 C -0.231 4.231 7 N -0.542 5.542 8 Si 0.764 3.236 9 H -0.211 1.211 10 H -0.215 1.215 11 H -0.223 1.223 12 C 0.109 3.891 13 H 0.142 0.858 14 C 0.285 3.715 15 O -0.403 6.403 16 O -0.282 6.282 17 C -0.065 4.065 18 C -0.016 4.016 19 C -0.198 4.198 20 C 0.100 3.900 21 O -0.254 6.254 22 C -0.076 4.076 23 C -0.310 4.310 24 C 0.109 3.891 25 O -0.239 6.239 26 C -0.077 4.077 27 C -0.198 4.198 28 H 0.046 0.954 29 H 0.097 0.903 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.153 0.847 37 H 0.133 0.867 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.135 0.865 41 H 0.176 0.824 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.143 0.857 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.205 10.312 12.687 16.881 hybrid contribution 0.577 0.299 -1.634 1.759 sum -3.628 10.612 11.052 15.746 Atomic orbital electron populations 1.22285 0.97489 1.00223 1.00810 1.20633 0.93796 0.82719 0.97922 1.44305 1.73534 1.10101 1.00977 1.19271 1.20932 1.12222 0.83454 0.91317 1.25243 0.96703 1.02032 0.99091 1.70218 1.17046 1.42178 1.24710 0.85718 0.79413 0.76876 0.81559 1.21081 1.21497 1.22262 1.18766 0.86011 0.92107 0.92260 0.85776 1.25585 0.92083 0.73605 0.80265 1.90632 1.56399 1.50813 1.42452 1.86544 1.32909 1.74696 1.34085 1.23436 0.79003 0.99268 1.04778 1.19509 0.96117 0.93184 0.92817 1.20621 1.03551 0.94781 1.00808 1.18814 0.94252 0.89658 0.87240 1.86097 1.58448 1.37149 1.43755 1.23342 0.92392 0.87067 1.04757 1.21312 1.06016 1.05572 0.98080 1.18569 0.89426 0.93687 0.87413 1.86049 1.45633 1.48221 1.43971 1.23358 0.93095 0.86685 1.04586 1.20211 0.98232 0.99961 1.01401 0.95387 0.90339 0.94581 0.94020 0.94028 0.94371 0.92499 0.93187 0.84692 0.86655 0.92001 0.91094 0.86513 0.82353 0.91672 0.92314 0.85719 0.83648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.63 9.65 71.98 0.69 -5.94 16 2 C 0.17 8.01 5.53 86.38 0.48 8.49 16 3 N -0.57 -27.91 2.39 -686.40 -1.64 -29.54 16 4 C -0.23 -12.67 6.21 84.03 0.52 -12.14 16 5 H 0.07 4.07 4.82 -2.91 -0.01 4.06 16 6 C -0.03 -1.92 4.64 84.86 0.39 -1.53 16 7 N -0.90 -50.61 9.00 21.65 0.19 -50.42 16 8 Si 0.93 47.26 29.64 68.60 2.03 49.29 16 9 H -0.29 -14.73 7.11 99.48 0.71 -14.02 16 10 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 11 H -0.30 -14.88 7.11 99.48 0.71 -14.17 16 12 C 0.22 9.16 2.98 43.50 0.13 9.29 16 13 H 0.12 4.42 7.61 -2.39 -0.02 4.41 16 14 C 0.44 18.69 6.92 71.23 0.49 19.18 16 15 O -0.52 -25.36 13.73 21.95 0.30 -25.06 16 16 O -0.37 -12.63 10.56 -51.31 -0.54 -13.17 16 17 C 0.03 0.76 10.56 113.37 1.20 1.96 16 18 C -0.01 -0.55 4.94 -19.89 -0.10 -0.64 16 19 C -0.18 -8.00 8.54 22.38 0.19 -7.81 16 20 C 0.15 5.63 6.68 22.49 0.15 5.78 16 21 O -0.34 -12.36 10.50 -92.35 -0.97 -13.33 16 22 C 0.02 0.42 9.81 113.37 1.11 1.53 16 23 C -0.29 -9.07 8.02 22.46 0.18 -8.89 16 24 C 0.15 4.94 6.68 22.49 0.15 5.09 16 25 O -0.33 -8.64 10.50 -92.40 -0.97 -9.61 16 26 C 0.02 0.28 9.81 113.37 1.11 1.39 16 27 C -0.18 -6.25 9.61 22.38 0.22 -6.03 16 28 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.08 4.14 5.68 -2.38 -0.01 4.12 16 30 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.04 2.16 6.69 -2.39 -0.02 2.14 16 32 H 0.04 1.66 8.05 -2.39 -0.02 1.64 16 33 H 0.25 13.67 8.31 -92.71 -0.77 12.90 16 34 H 0.06 1.51 8.13 -2.39 -0.02 1.49 16 35 H 0.05 1.40 8.13 -2.39 -0.02 1.38 16 36 H 0.14 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.12 6.07 4.94 -2.92 -0.01 6.05 16 38 H 0.06 1.25 7.66 -2.39 -0.02 1.23 16 39 H 0.07 1.28 7.66 -2.39 -0.02 1.26 16 40 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.16 3.69 4.54 -2.91 -0.01 3.68 16 42 H 0.06 0.91 7.66 -2.39 -0.02 0.89 16 43 H 0.06 0.91 7.66 -2.39 -0.02 0.89 16 44 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.15 4.41 7.95 -2.91 -0.02 4.39 16 Total: -1.00 -71.51 364.44 6.34 -65.17 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 1.01 Total: 16.94 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: 6.92 Total: 9.72 kcal Atomic # 7 Polarization: -78.52 SS G_CDS: -1.44 Total: -79.96 kcal Atomic # 8 Polarization: -58.99 SS G_CDS: -2.18 Total: -61.17 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Total: -71.51 6.34 -65.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297706162.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.414 kcal (2) G-P(sol) polarization free energy of solvation -71.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds