Wall clock time and date at job start Tue Mar 31 2020 14:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42895 * 113.99942 * 2 1 4 4 C 1.53002 * 109.47244 * 180.02562 * 3 2 1 5 5 O 1.42902 * 109.47057 * 64.99762 * 4 3 2 6 6 C 1.42897 * 113.99755 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.47341 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47229 * 179.97438 * 7 6 5 9 9 N 1.46499 * 109.47058 * 179.97438 * 8 7 6 10 10 C 1.34776 * 120.00532 * 180.02562 * 9 8 7 11 11 O 1.21596 * 119.99483 * 0.02562 * 10 9 8 12 12 C 1.47529 * 120.00576 * 179.97438 * 10 9 8 13 13 C 1.39668 * 120.19410 * 0.02562 * 12 10 9 14 14 C 1.37835 * 119.91853 * 179.97438 * 13 12 10 15 15 C 1.38573 * 120.31903 * 0.02562 * 14 13 12 16 16 C 1.38022 * 120.40696 * 0.02562 * 15 14 13 17 17 C 1.38831 * 120.06839 * 359.95623 * 16 15 14 18 18 O 1.35527 * 120.16025 * 180.02562 * 17 16 15 19 19 C 1.34817 * 116.99627 * 354.39561 * 18 17 16 20 20 H 1.07998 * 120.00286 * 5.06815 * 19 18 17 21 21 C 1.38705 * 119.99676 * 185.06799 * 19 18 17 22 22 N 1.31514 * 119.99991 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99619 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47413 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47271 * 120.00166 * 23 21 19 26 26 H 1.48507 * 109.46838 * 239.99679 * 23 21 19 27 27 H 1.08996 * 109.47226 * 60.00483 * 1 2 3 28 28 H 1.08997 * 109.47058 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46941 * 299.99765 * 1 2 3 30 30 H 1.08998 * 109.47622 * 59.99619 * 3 2 1 31 31 H 1.09011 * 109.46957 * 299.99899 * 3 2 1 32 32 H 1.09001 * 109.46615 * 304.99657 * 4 3 2 33 33 H 1.08997 * 109.47122 * 184.99755 * 4 3 2 34 34 H 1.08996 * 109.47638 * 59.99470 * 6 5 4 35 35 H 1.09003 * 109.47021 * 300.00107 * 6 5 4 36 36 H 1.09004 * 109.46986 * 59.99516 * 7 6 5 37 37 H 1.09000 * 109.46715 * 300.00062 * 7 6 5 38 38 H 1.08999 * 109.46796 * 60.00185 * 8 7 6 39 39 H 1.08995 * 109.47178 * 299.99712 * 8 7 6 40 40 H 0.97003 * 120.00039 * 0.02562 * 9 8 7 41 41 H 1.07997 * 120.04248 * 0.26955 * 13 12 10 42 42 H 1.07992 * 119.83718 * 179.97438 * 14 13 12 43 43 H 1.08000 * 119.79251 * 179.97438 * 15 14 13 44 44 H 1.07996 * 119.96390 * 179.97438 * 16 15 14 45 45 H 0.96997 * 120.00153 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 8 3.9649 0.5796 -1.2220 6 6 5.3811 0.4191 -1.3246 7 6 5.7246 -0.2351 -2.6643 8 6 7.2410 -0.4063 -2.7743 9 7 7.5698 -1.0334 -4.0569 10 6 8.8553 -1.2842 -4.3745 11 8 9.7422 -0.9905 -3.5963 12 6 9.1864 -1.9162 -5.6659 13 6 8.1709 -2.2557 -6.5626 14 6 8.4867 -2.8455 -7.7677 15 6 9.8081 -3.1042 -8.0949 16 6 10.8221 -2.7752 -7.2183 17 6 10.5228 -2.1802 -6.0001 18 8 11.5171 -1.8559 -5.1382 19 6 12.7654 -2.2416 -5.4707 20 1 12.9492 -2.7108 -6.4259 21 6 13.8136 -2.0359 -4.5859 22 7 13.5898 -1.4641 -3.4229 23 14 15.5433 -2.5697 -5.0470 24 1 15.5283 -3.1824 -6.3996 25 1 16.4422 -1.3878 -5.0484 26 1 16.0343 -3.5638 -4.0590 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6886 1.8464 -0.8901 32 1 3.8515 0.5683 0.8410 33 1 3.9785 2.1765 0.0889 34 1 5.7351 -0.2132 -0.5105 35 1 5.8628 1.3950 -1.2622 36 1 5.3706 0.3970 -3.4787 37 1 5.2429 -1.2110 -2.7261 38 1 7.5953 -1.0383 -1.9600 39 1 7.7222 0.5697 -2.7128 40 1 6.8622 -1.2680 -4.6776 41 1 7.1398 -2.0521 -6.3141 42 1 7.7004 -3.1078 -8.4599 43 1 10.0459 -3.5670 -9.0413 44 1 11.8495 -2.9804 -7.4804 45 1 14.3228 -1.3205 -2.8040 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299148624.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:56 Heat of formation + Delta-G solvation = -128.495836 kcal Electronic energy + Delta-G solvation = -26062.505833 eV Core-core repulsion = 22046.413490 eV Total energy + Delta-G solvation = -4016.092342 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -39.57134 -38.79800 -38.11421 -37.49935 -36.31313 -34.91856 -32.34000 -32.10887 -30.63673 -29.73226 -28.89550 -26.65408 -25.60823 -25.12319 -22.90165 -22.81605 -21.74992 -21.17143 -19.79793 -18.02857 -17.54325 -17.23965 -17.09198 -16.11687 -16.10208 -15.80055 -15.66212 -15.15338 -14.84236 -14.61313 -14.24529 -14.12703 -13.93023 -13.81363 -13.58933 -13.25983 -12.81925 -12.62273 -12.47308 -12.27507 -11.93268 -11.80183 -11.69979 -11.52084 -11.33250 -11.20305 -11.09029 -11.03169 -10.88822 -10.74862 -10.43056 -10.05996 -9.81410 -9.54917 -8.87043 -8.82982 -8.53026 -8.24408 -7.28832 -6.42872 -4.02689 1.74122 2.34021 3.12759 3.13772 3.19439 3.22804 3.40864 3.78112 3.87521 3.94916 4.63710 4.66426 4.78761 4.85365 4.89950 4.95869 5.00381 5.02098 5.08817 5.12479 5.19454 5.21528 5.32380 5.35245 5.41145 5.50974 5.52075 5.57104 5.71672 5.77015 6.03217 6.11075 6.14326 6.22314 6.58644 6.71268 6.75692 6.92938 6.94317 7.02370 7.08542 7.26013 7.31458 7.71636 7.93991 8.15619 8.96921 9.12867 9.69791 10.71136 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.017245 B = 0.002104 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.314527 B =13302.113221 C =14754.062037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.063 3.937 4 C 0.063 3.937 5 O -0.381 6.381 6 C 0.065 3.935 7 C -0.128 4.128 8 C 0.128 3.872 9 N -0.744 5.744 10 C 0.554 3.446 11 O -0.502 6.502 12 C -0.227 4.227 13 C -0.038 4.038 14 C -0.231 4.231 15 C -0.051 4.051 16 C -0.238 4.238 17 C 0.189 3.811 18 O -0.125 6.125 19 C -0.403 4.403 20 H 0.094 0.906 21 C 0.044 3.956 22 N -0.833 5.833 23 Si 0.941 3.059 24 H -0.266 1.266 25 H -0.275 1.275 26 H -0.275 1.275 27 H 0.041 0.959 28 H 0.086 0.914 29 H 0.039 0.961 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.393 0.607 41 H 0.112 0.888 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.132 0.868 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.959 3.851 2.922 21.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C -0.014 4.014 4 C -0.014 4.014 5 O -0.301 6.301 6 C -0.012 4.012 7 C -0.166 4.166 8 C 0.003 3.997 9 N -0.400 5.400 10 C 0.343 3.657 11 O -0.376 6.376 12 C -0.232 4.232 13 C -0.057 4.057 14 C -0.250 4.250 15 C -0.070 4.070 16 C -0.257 4.257 17 C 0.130 3.870 18 O -0.023 6.023 19 C -0.479 4.479 20 H 0.112 0.888 21 C -0.164 4.164 22 N -0.464 5.464 23 Si 0.765 3.235 24 H -0.190 1.190 25 H -0.200 1.200 26 H -0.200 1.200 27 H 0.060 0.940 28 H 0.105 0.895 29 H 0.058 0.942 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.227 0.773 41 H 0.130 0.870 42 H 0.127 0.873 43 H 0.128 0.872 44 H 0.149 0.851 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -20.114 4.063 3.844 20.877 hybrid contribution 0.389 -0.067 -0.415 0.573 sum -19.725 3.996 3.429 20.415 Atomic orbital electron populations 1.22750 0.81097 1.02909 0.99822 1.87978 1.19567 1.27320 1.95359 1.22575 0.92503 0.85499 1.00824 1.22502 0.93210 0.97677 0.87978 1.87915 1.22293 1.82109 1.37761 1.22373 0.81206 0.99738 0.97839 1.21659 0.95563 1.02242 0.97098 1.21008 0.93165 0.98611 0.86878 1.45840 1.08287 1.65837 1.20040 1.18231 0.81779 0.78833 0.86814 1.90948 1.46020 1.50224 1.50381 1.18852 0.91557 1.15511 0.97260 1.20774 0.96633 0.95206 0.93102 1.20467 0.96046 1.09911 0.98558 1.20897 0.92707 0.95768 0.97590 1.21158 1.00278 1.08678 0.95625 1.19280 0.88280 0.90256 0.89203 1.84179 1.14381 1.63085 1.40628 1.21549 0.81387 1.41161 1.03818 0.88818 1.25392 0.99784 0.96405 0.94808 1.70138 1.32695 1.36801 1.06806 0.85657 0.80379 0.78552 0.78865 1.18966 1.20041 1.20035 0.94002 0.89543 0.94233 0.91866 0.92380 0.92340 0.91694 0.92777 0.92903 0.90578 0.90430 0.91648 0.91697 0.77272 0.86993 0.87260 0.87191 0.85070 0.91937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.38 -3.88 10.67 -40.08 -0.43 -4.31 16 3 C 0.06 0.49 6.32 37.16 0.23 0.72 16 4 C 0.06 0.54 6.32 37.16 0.23 0.77 16 5 O -0.38 -4.34 10.31 -40.08 -0.41 -4.75 16 6 C 0.07 0.68 5.94 37.16 0.22 0.90 16 7 C -0.13 -1.41 5.70 -26.73 -0.15 -1.56 16 8 C 0.13 1.84 5.67 -4.04 -0.02 1.82 16 9 N -0.74 -12.23 5.51 -61.35 -0.34 -12.57 16 10 C 0.55 12.39 7.76 -12.47 -0.10 12.29 16 11 O -0.50 -13.93 15.17 -16.57 -0.25 -14.19 16 12 C -0.23 -5.01 5.89 -104.81 -0.62 -5.62 16 13 C -0.04 -0.67 9.54 -39.20 -0.37 -1.04 16 14 C -0.23 -3.83 10.03 -39.61 -0.40 -4.23 16 15 C -0.05 -0.91 10.03 -39.54 -0.40 -1.31 16 16 C -0.24 -5.18 9.16 -39.44 -0.36 -5.54 16 17 C 0.19 4.76 6.66 -38.60 -0.26 4.51 16 18 O -0.12 -3.72 7.84 -21.08 -0.17 -3.88 16 19 C -0.40 -11.51 9.49 30.90 0.29 -11.22 16 20 H 0.09 2.43 5.21 -52.49 -0.27 2.16 16 21 C 0.04 1.23 5.49 -17.51 -0.10 1.13 16 22 N -0.83 -25.30 13.67 55.48 0.76 -24.54 16 23 Si 0.94 20.68 29.55 -169.99 -5.02 15.65 16 24 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 25 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 26 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 27 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.39 5.18 6.50 -40.82 -0.27 4.91 16 41 H 0.11 1.50 6.40 -52.49 -0.34 1.16 16 42 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 43 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 44 H 0.13 2.81 5.64 -52.49 -0.30 2.52 16 45 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 383.05 15.07 5.77 5.77 Total: -1.00 -36.71 383.05 -7.41 -44.12 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -6.65 Total: 5.74 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -0.67 Total: -7.05 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.42 Total: -37.11 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -1.26 Total: -27.13 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.71 -7.41 -44.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299148624.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.371 kcal (2) G-P(sol) polarization free energy of solvation -36.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds