Wall clock time and date at job start Tue Mar 31 2020 14:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42894 * 114.00118 * 2 1 4 4 C 1.53006 * 109.46992 * 179.97438 * 3 2 1 5 5 N 1.46493 * 109.47215 * 65.00273 * 4 3 2 6 6 C 1.37102 * 120.00450 * 84.92674 * 5 4 3 7 7 H 1.07994 * 119.99845 * 218.33871 * 6 5 4 8 8 C 1.38947 * 119.99670 * 38.33557 * 6 5 4 9 9 N 1.31407 * 120.00133 * 20.89704 * 8 6 5 10 10 Si 1.86801 * 119.99751 * 200.89538 * 8 6 5 11 11 H 1.48498 * 109.47104 * 60.00496 * 10 8 6 12 12 H 1.48499 * 109.47075 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47439 * 300.00116 * 10 8 6 14 14 C 1.34781 * 119.99572 * 265.20060 * 5 4 3 15 15 O 1.21291 * 120.00398 * 359.72412 * 14 5 4 16 16 C 1.50701 * 119.99803 * 179.72614 * 14 5 4 17 17 C 1.50696 * 109.47381 * 179.97438 * 16 14 5 18 18 C 1.38252 * 119.92552 * 269.72990 * 17 16 14 19 19 C 1.38253 * 120.14427 * 179.72179 * 18 17 16 20 20 C 1.38568 * 119.99497 * 0.54550 * 19 18 17 21 21 O 1.36000 * 120.06876 * 179.70386 * 20 19 18 22 22 C 1.42904 * 116.99783 * 0.02562 * 21 20 19 23 23 C 1.39151 * 119.85665 * 359.72691 * 20 19 18 24 24 O 1.35997 * 120.07112 * 180.02562 * 23 20 19 25 25 C 1.42903 * 116.99961 * 179.97438 * 24 23 20 26 26 C 1.38245 * 119.92846 * 89.99533 * 17 16 14 27 27 H 1.09000 * 109.47324 * 299.99878 * 1 2 3 28 28 H 1.09004 * 109.47022 * 59.99802 * 1 2 3 29 29 H 1.09001 * 109.47435 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47499 * 59.99880 * 3 2 1 31 31 H 1.09000 * 109.47380 * 299.99623 * 3 2 1 32 32 H 1.09001 * 109.46826 * 304.99883 * 4 3 2 33 33 H 1.09001 * 109.47016 * 185.00127 * 4 3 2 34 34 H 0.97000 * 119.99812 * 179.97438 * 9 8 6 35 35 H 1.09006 * 109.47026 * 300.00117 * 16 14 5 36 36 H 1.08996 * 109.47737 * 59.99765 * 16 14 5 37 37 H 1.07993 * 119.92888 * 359.97438 * 18 17 16 38 38 H 1.07997 * 119.99899 * 180.24717 * 19 18 17 39 39 H 1.09000 * 109.46654 * 179.97438 * 22 21 20 40 40 H 1.08992 * 109.47130 * 299.99692 * 22 21 20 41 41 H 1.08997 * 109.47219 * 59.99951 * 22 21 20 42 42 H 1.08994 * 109.46832 * 179.97438 * 25 24 23 43 43 H 1.08998 * 109.46686 * 299.99762 * 25 24 23 44 44 H 1.08999 * 109.46902 * 59.99416 * 25 24 23 45 45 H 1.08010 * 119.99715 * 359.97438 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5639 -1.2508 6 6 4.1682 1.3349 -2.3682 7 1 3.8864 0.9570 -3.3398 8 6 4.7248 2.6026 -2.2504 9 7 5.4332 2.9130 -1.1881 10 14 4.4661 3.8655 -3.6023 11 1 3.0132 4.1254 -3.7654 12 1 5.1576 5.1284 -3.2389 13 1 5.0224 3.3465 -4.8776 14 6 4.1890 -0.7660 -1.3052 15 8 4.0196 -1.4482 -0.3168 16 6 4.6369 -1.4054 -2.5943 17 6 4.8015 -2.8891 -2.3885 18 6 6.0223 -3.3985 -1.9866 19 6 6.1768 -4.7583 -1.7909 20 6 5.1097 -5.6151 -2.0084 21 8 5.2616 -6.9537 -1.8222 22 6 6.5494 -7.4080 -1.4008 23 6 3.8825 -5.1030 -2.4184 24 8 2.8321 -5.9399 -2.6326 25 6 1.6027 -5.3438 -3.0516 26 6 3.7329 -3.7385 -2.6072 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 3.8507 0.5684 0.8427 33 1 3.9785 2.1764 0.0902 34 1 5.8221 3.7979 -1.1061 35 1 3.8899 -1.2261 -3.3676 36 1 5.5893 -0.9739 -2.9022 37 1 6.8560 -2.7322 -1.8213 38 1 7.1304 -5.1532 -1.4731 39 1 6.5336 -8.4922 -1.2897 40 1 7.2946 -7.1296 -2.1459 41 1 6.8019 -6.9488 -0.4451 42 1 0.8500 -6.1205 -3.1867 43 1 1.2646 -4.6375 -2.2934 44 1 1.7562 -4.8189 -3.9944 45 1 2.7813 -3.3384 -2.9248 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000317044379.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:09:56 Heat of formation + Delta-G solvation = -138.382195 kcal Electronic energy + Delta-G solvation = -28194.630131 eV Core-core repulsion = 24178.109084 eV Total energy + Delta-G solvation = -4016.521047 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.55513 -40.40513 -39.35332 -38.65602 -37.84720 -36.49055 -33.47012 -33.06870 -31.27130 -30.97183 -29.07845 -28.05526 -27.35941 -27.05999 -26.47103 -23.71556 -23.11160 -22.31707 -20.90235 -19.42987 -18.64126 -17.95309 -17.82745 -17.61862 -17.20849 -16.96697 -16.92688 -16.12491 -16.11381 -16.09688 -15.74099 -15.67595 -15.41656 -15.20502 -14.79769 -14.42787 -14.13612 -13.49705 -13.45740 -13.35810 -13.18723 -13.04230 -12.85508 -12.71692 -12.64988 -12.40784 -12.24749 -12.09418 -12.06349 -12.04287 -11.97413 -11.85880 -11.75120 -11.00002 -10.55030 -10.21041 -9.61992 -9.36235 -8.70365 -8.24466 -6.01849 0.34906 0.47144 1.47268 1.52367 1.60102 2.18276 2.35833 2.37472 2.40112 2.68876 3.00811 3.07426 3.29354 3.80661 3.89207 4.10750 4.22147 4.27754 4.37174 4.38498 4.38817 4.44600 4.45028 4.47546 4.50802 4.55597 4.58462 4.61893 4.70866 4.72087 4.76036 4.77489 4.78662 4.93712 5.05845 5.19310 5.29887 5.30163 5.54609 5.70519 5.74245 6.11090 6.12881 6.37880 6.51422 6.64168 7.20792 7.69861 8.17750 8.77757 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.013453 B = 0.003798 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.880460 B = 7369.610065 C = 8273.219008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.406 6.406 3 C 0.061 3.939 4 C 0.114 3.886 5 N -0.450 5.450 6 C -0.352 4.352 7 H 0.095 0.905 8 C 0.007 3.993 9 N -0.893 5.893 10 Si 0.978 3.022 11 H -0.269 1.269 12 H -0.286 1.286 13 H -0.264 1.264 14 C 0.472 3.528 15 O -0.616 6.616 16 C -0.072 4.072 17 C -0.059 4.059 18 C -0.116 4.116 19 C -0.165 4.165 20 C 0.076 3.924 21 O -0.329 6.329 22 C 0.017 3.983 23 C 0.083 3.917 24 O -0.326 6.326 25 C 0.020 3.980 26 C -0.163 4.163 27 H 0.051 0.949 28 H 0.044 0.956 29 H 0.088 0.912 30 H 0.062 0.938 31 H 0.047 0.953 32 H 0.039 0.961 33 H 0.104 0.896 34 H 0.272 0.728 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.129 0.871 38 H 0.161 0.839 39 H 0.120 0.880 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.125 0.875 43 H 0.049 0.951 44 H 0.064 0.936 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.240 -10.307 -4.169 11.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.325 6.325 3 C -0.016 4.016 4 C -0.010 4.010 5 N -0.169 5.169 6 C -0.480 4.480 7 H 0.113 0.887 8 C -0.196 4.196 9 N -0.530 5.530 10 Si 0.802 3.198 11 H -0.194 1.194 12 H -0.211 1.211 13 H -0.188 1.188 14 C 0.262 3.738 15 O -0.502 6.502 16 C -0.111 4.111 17 C -0.060 4.060 18 C -0.135 4.135 19 C -0.183 4.183 20 C 0.031 3.969 21 O -0.243 6.243 22 C -0.077 4.077 23 C 0.038 3.962 24 O -0.240 6.240 25 C -0.074 4.074 26 C -0.182 4.182 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.106 0.894 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.122 0.878 34 H 0.082 0.918 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.147 0.853 38 H 0.179 0.821 39 H 0.139 0.861 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.143 0.857 43 H 0.067 0.933 44 H 0.082 0.918 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.258 -10.988 -3.601 12.013 hybrid contribution -0.122 1.566 -0.242 1.590 sum -3.380 -9.421 -3.843 10.721 Atomic orbital electron populations 1.22853 0.80627 1.03025 1.00443 1.88070 1.20607 1.28446 1.95380 1.22891 0.94442 0.84441 0.99851 1.21386 0.91781 1.00465 0.87372 1.43465 1.58028 1.05164 1.10262 1.19657 1.41643 0.98876 0.87790 0.88700 1.26132 0.93231 1.00616 0.99613 1.69992 1.29662 1.22111 1.31281 0.85225 0.78659 0.77231 0.78706 1.19374 1.21111 1.18813 1.20832 0.79663 0.83185 0.90115 1.90524 1.57337 1.63564 1.38812 1.20309 1.03827 0.90750 0.96237 1.19340 0.93654 0.94256 0.98722 1.20905 0.97476 0.95112 0.99991 1.21208 0.98816 0.93113 1.05166 1.18356 0.92320 0.83976 1.02222 1.86102 1.35932 1.18724 1.83589 1.23344 0.82480 1.01968 0.99898 1.18339 0.87156 0.88960 1.01785 1.86081 1.19532 1.34956 1.83468 1.23289 0.83567 1.00961 0.99602 1.20941 1.00101 0.91042 1.06073 0.93055 0.93768 0.89354 0.91954 0.93504 0.94196 0.87800 0.91845 0.88516 0.88413 0.85257 0.82139 0.86139 0.91440 0.92267 0.85660 0.93260 0.91767 0.84563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 11.01 113.37 1.25 2.07 16 2 O -0.41 -17.36 10.12 -148.98 -1.51 -18.87 16 3 C 0.06 2.54 6.26 71.98 0.45 2.99 16 4 C 0.11 5.58 5.50 86.38 0.48 6.05 16 5 N -0.45 -22.70 2.48 -635.54 -1.58 -24.28 16 6 C -0.35 -17.20 8.56 84.04 0.72 -16.48 16 7 H 0.10 4.37 7.10 -2.91 -0.02 4.35 16 8 C 0.01 0.34 5.01 84.93 0.43 0.77 16 9 N -0.89 -45.87 11.42 21.66 0.25 -45.62 16 10 Si 0.98 37.67 29.60 68.60 2.03 39.70 16 11 H -0.27 -10.07 7.11 99.48 0.71 -9.37 16 12 H -0.29 -11.00 7.11 99.48 0.71 -10.30 16 13 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 14 C 0.47 23.58 7.36 87.66 0.64 24.23 16 15 O -0.62 -34.29 15.28 -3.06 -0.05 -34.34 16 16 C -0.07 -2.93 4.52 29.10 0.13 -2.80 16 17 C -0.06 -2.26 4.37 -19.86 -0.09 -2.35 16 18 C -0.12 -4.10 9.69 22.28 0.22 -3.88 16 19 C -0.16 -5.08 9.04 22.35 0.20 -4.87 16 20 C 0.08 2.56 6.70 22.57 0.15 2.71 16 21 O -0.33 -9.86 10.28 -79.69 -0.82 -10.68 16 22 C 0.02 0.33 9.81 113.37 1.11 1.44 16 23 C 0.08 2.93 6.70 22.57 0.15 3.08 16 24 O -0.33 -10.60 10.28 -79.66 -0.82 -11.42 16 25 C 0.02 0.48 9.81 113.37 1.11 1.59 16 26 C -0.16 -5.90 8.69 22.35 0.19 -5.70 16 27 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.04 2.10 7.28 -2.39 -0.02 2.08 16 33 H 0.10 5.27 5.53 -2.39 -0.01 5.26 16 34 H 0.27 13.18 8.31 -92.71 -0.77 12.41 16 35 H 0.10 3.64 7.61 -2.38 -0.02 3.62 16 36 H 0.10 3.90 8.04 -2.39 -0.02 3.88 16 37 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 38 H 0.16 3.76 6.30 -2.91 -0.02 3.74 16 39 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.07 1.07 7.66 -2.39 -0.02 1.05 16 41 H 0.06 1.05 7.66 -2.39 -0.02 1.03 16 42 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.05 1.22 7.66 -2.39 -0.02 1.20 16 44 H 0.06 1.35 7.66 -2.39 -0.02 1.33 16 45 H 0.14 4.57 6.30 -2.91 -0.02 4.55 16 Total: -1.00 -69.53 376.00 5.65 -63.88 By element: Atomic # 1 Polarization: 31.80 SS G_CDS: 0.99 Total: 32.79 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: 7.15 Total: 8.84 kcal Atomic # 7 Polarization: -68.57 SS G_CDS: -1.33 Total: -69.90 kcal Atomic # 8 Polarization: -72.11 SS G_CDS: -3.19 Total: -75.31 kcal Atomic # 14 Polarization: 37.67 SS G_CDS: 2.03 Total: 39.70 kcal Total: -69.53 5.65 -63.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317044379.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.498 kcal (2) G-P(sol) polarization free energy of solvation -69.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds