Wall clock time and date at job start Tue Mar 31 2020 14:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 114.00112 * 2 1 4 4 C 1.52999 * 109.47366 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46879 * 64.99865 * 4 3 2 6 6 C 1.37093 * 120.00294 * 269.99907 * 5 4 3 7 7 H 1.08005 * 120.00476 * 142.16940 * 6 5 4 8 8 C 1.38952 * 120.00013 * 322.17438 * 6 5 4 9 9 N 1.31413 * 119.99686 * 339.72247 * 8 6 5 10 10 Si 1.86791 * 120.00310 * 159.72530 * 8 6 5 11 11 H 1.48501 * 109.47133 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.47237 * 119.99759 * 10 8 6 13 13 H 1.48503 * 109.47390 * 239.99919 * 10 8 6 14 14 C 1.34783 * 120.00088 * 90.00344 * 5 4 3 15 15 O 1.21291 * 119.99818 * 4.70850 * 14 5 4 16 16 C 1.50694 * 120.00153 * 184.71863 * 14 5 4 17 17 H 1.08994 * 109.47394 * 53.68402 * 16 14 5 18 18 C 1.53009 * 109.46943 * 293.68654 * 16 14 5 19 19 C 1.53002 * 109.46837 * 300.00066 * 18 16 14 20 20 C 1.53004 * 109.47290 * 299.99940 * 19 18 16 21 21 C 1.52996 * 109.47094 * 60.00019 * 20 19 18 22 22 H 1.09003 * 109.47326 * 60.00100 * 21 20 19 23 23 C 1.52997 * 109.47293 * 180.02562 * 21 20 19 24 24 F 1.39902 * 109.47221 * 179.97438 * 23 21 20 25 25 F 1.39900 * 109.46866 * 300.00216 * 23 21 20 26 26 F 1.39898 * 109.47300 * 59.99955 * 23 21 20 27 27 C 1.52997 * 109.47156 * 173.69036 * 16 14 5 28 28 H 1.08995 * 109.47075 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47065 * 300.00148 * 1 2 3 30 30 H 1.08995 * 109.47104 * 60.00099 * 1 2 3 31 31 H 1.09002 * 109.47173 * 59.99711 * 3 2 1 32 32 H 1.09005 * 109.47066 * 300.00617 * 3 2 1 33 33 H 1.08999 * 109.47254 * 305.00108 * 4 3 2 34 34 H 1.09002 * 109.46797 * 184.99939 * 4 3 2 35 35 H 0.97001 * 120.00453 * 185.02227 * 9 8 6 36 36 H 1.08994 * 109.46922 * 180.02562 * 18 16 14 37 37 H 1.09004 * 109.46862 * 59.99683 * 18 16 14 38 38 H 1.09003 * 109.47033 * 59.99781 * 19 18 16 39 39 H 1.09000 * 109.47271 * 179.97438 * 19 18 16 40 40 H 1.08994 * 109.47272 * 180.02562 * 20 19 18 41 41 H 1.09002 * 109.46580 * 300.00279 * 20 19 18 42 42 H 1.09004 * 109.47347 * 179.97438 * 27 16 14 43 43 H 1.09000 * 109.46784 * 299.99184 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.0980 -0.7990 -1.3346 7 1 3.8194 -1.3112 -2.2437 8 6 4.5792 -1.5216 -0.2496 9 7 5.2791 -0.9171 0.6840 10 14 4.2314 -3.3521 -0.1183 11 1 3.4282 -3.7886 -1.2886 12 1 5.5145 -4.0992 -0.0916 13 1 3.4743 -3.6239 1.1301 14 6 4.2634 1.3329 -2.3200 15 8 4.2389 2.5416 -2.2218 16 6 4.6141 0.6910 -3.6375 17 1 3.8310 -0.0131 -3.9186 18 6 5.9447 -0.0527 -3.5043 19 6 7.0440 0.9357 -3.1098 20 6 7.1690 2.0159 -4.1862 21 6 5.8385 2.7594 -4.3194 22 1 5.5847 3.2238 -3.3665 23 6 5.9632 3.8392 -5.3962 24 9 4.7464 4.5187 -5.5185 25 9 6.9685 4.7429 -5.0360 26 9 6.2886 3.2428 -6.6192 27 6 4.7392 1.7711 -4.7139 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.8508 0.5685 0.8427 34 1 3.9784 2.1766 0.0902 35 1 5.6767 -1.4331 1.4028 36 1 6.1986 -0.5166 -4.4573 37 1 5.8556 -0.8221 -2.7374 38 1 6.7902 1.4001 -2.1568 39 1 7.9918 0.4060 -3.0144 40 1 7.9524 2.7197 -3.9054 41 1 7.4227 1.5515 -5.1391 42 1 4.9933 1.3069 -5.6668 43 1 3.7913 2.3008 -4.8088 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000317174153.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:17 Heat of formation + Delta-G solvation = -246.027336 kcal Electronic energy + Delta-G solvation = -30194.504976 eV Core-core repulsion = 25631.459345 eV Total energy + Delta-G solvation = -4563.045631 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.76947 -47.26030 -47.22570 -39.70352 -37.45458 -36.37942 -34.72462 -31.71986 -31.44942 -30.52733 -28.95323 -25.87367 -25.23482 -24.82855 -23.26467 -21.67464 -21.38995 -20.08670 -18.87518 -17.99101 -17.89661 -17.23374 -16.55898 -15.98799 -15.43831 -15.30570 -14.82616 -14.54426 -14.40390 -14.21592 -14.08120 -14.03858 -13.73702 -13.66073 -13.42598 -13.41577 -13.13263 -13.01046 -12.69686 -12.03958 -11.96032 -11.77551 -11.60656 -11.40328 -11.35593 -11.16650 -11.12393 -10.98655 -10.72976 -10.44216 -10.34168 -10.25564 -10.05105 -9.76574 -9.69165 -9.10256 -8.98500 -8.26694 -7.47249 -6.34340 -3.99884 3.13711 3.16369 3.26335 3.28890 3.82318 4.13514 4.21501 4.41254 4.47295 4.49839 4.70290 5.02913 5.19545 5.24506 5.50430 5.63525 5.64986 5.69508 5.72939 5.84899 5.90572 5.91344 5.96255 6.02032 6.04622 6.07553 6.27299 6.30481 6.33245 6.47154 6.56691 6.64272 6.71429 6.75215 6.97918 7.13104 7.26099 7.49323 7.80988 8.00185 8.36538 9.10661 9.49495 9.91464 10.68456 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.016352 B = 0.004656 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.918181 B = 6012.763886 C = 6934.392488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.362 6.362 3 C 0.054 3.946 4 C 0.109 3.891 5 N -0.425 5.425 6 C -0.320 4.320 7 H 0.087 0.913 8 C 0.052 3.948 9 N -0.863 5.863 10 Si 0.912 3.088 11 H -0.269 1.269 12 H -0.285 1.285 13 H -0.280 1.280 14 C 0.476 3.524 15 O -0.608 6.608 16 C -0.082 4.082 17 H 0.087 0.913 18 C -0.114 4.114 19 C -0.109 4.109 20 C -0.113 4.113 21 C -0.143 4.143 22 H 0.153 0.847 23 C 0.450 3.550 24 F -0.186 7.186 25 F -0.190 7.190 26 F -0.192 7.192 27 C -0.092 4.092 28 H 0.077 0.923 29 H 0.029 0.971 30 H 0.031 0.969 31 H 0.038 0.962 32 H 0.037 0.963 33 H 0.115 0.885 34 H 0.072 0.928 35 H 0.268 0.732 36 H 0.053 0.947 37 H 0.105 0.895 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.822 2.357 -6.142 6.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C -0.024 4.024 4 C -0.014 4.014 5 N -0.141 5.141 6 C -0.448 4.448 7 H 0.105 0.895 8 C -0.153 4.153 9 N -0.500 5.500 10 Si 0.740 3.260 11 H -0.193 1.193 12 H -0.211 1.211 13 H -0.206 1.206 14 C 0.265 3.735 15 O -0.496 6.496 16 C -0.104 4.104 17 H 0.105 0.895 18 C -0.151 4.151 19 C -0.146 4.146 20 C -0.151 4.151 21 C -0.162 4.162 22 H 0.170 0.830 23 C 0.396 3.604 24 F -0.168 7.168 25 F -0.172 7.172 26 F -0.174 7.174 27 C -0.130 4.130 28 H 0.095 0.905 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.133 0.867 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.123 0.877 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.686 2.736 -5.867 6.509 hybrid contribution -0.512 -0.511 -0.057 0.725 sum -1.198 2.225 -5.924 6.440 Atomic orbital electron populations 1.22643 0.83537 1.01712 0.98789 1.88154 1.17243 1.27633 1.95004 1.23027 0.96595 0.84332 0.98405 1.21496 0.89147 0.99217 0.91589 1.43284 1.55587 1.06288 1.08943 1.19233 1.43328 0.80615 1.01577 0.89546 1.25213 0.94449 0.99624 0.96042 1.69808 1.29613 1.36490 1.14068 0.86114 0.78063 0.83135 0.78725 1.19326 1.21138 1.20621 1.20279 0.79838 0.86563 0.86795 1.90373 1.58908 1.14764 1.85578 1.20912 0.99482 0.96747 0.93220 0.89480 1.21598 0.92250 0.98987 1.02305 1.21404 0.98887 0.95935 0.98424 1.21585 0.94565 0.98400 1.00527 1.22973 0.99180 0.94765 0.99276 0.82967 1.21020 0.73005 0.83364 0.82979 1.93148 1.45268 1.81981 1.96374 1.93128 1.61965 1.70386 1.91709 1.93114 1.92696 1.83569 1.47975 1.21329 0.97645 0.95903 0.98076 0.90460 0.95222 0.95022 0.94408 0.94428 0.86741 0.91012 0.92129 0.92869 0.87693 0.90980 0.92008 0.91675 0.91722 0.91538 0.91140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.36 -7.45 10.18 -35.23 -0.36 -7.80 16 3 C 0.05 1.08 6.28 37.16 0.23 1.31 16 4 C 0.11 2.47 5.47 -4.04 -0.02 2.45 16 5 N -0.42 -9.80 2.50 -114.81 -0.29 -10.09 16 6 C -0.32 -7.47 6.04 -14.93 -0.09 -7.56 16 7 H 0.09 1.98 6.75 -52.48 -0.35 1.63 16 8 C 0.05 1.25 4.98 -17.47 -0.09 1.16 16 9 N -0.86 -21.52 11.41 55.50 0.63 -20.89 16 10 Si 0.91 19.17 29.60 -169.99 -5.03 14.14 16 11 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 12 H -0.29 -5.96 7.11 56.52 0.40 -5.56 16 13 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 14 C 0.48 10.41 5.56 -10.99 -0.06 10.35 16 15 O -0.61 -14.23 13.01 5.55 0.07 -14.16 16 16 C -0.08 -1.51 2.23 -91.77 -0.20 -1.72 16 17 H 0.09 1.56 7.48 -51.93 -0.39 1.17 16 18 C -0.11 -1.98 5.21 -26.73 -0.14 -2.11 16 19 C -0.11 -1.85 5.70 -26.73 -0.15 -2.01 16 20 C -0.11 -1.74 4.96 -26.73 -0.13 -1.87 16 21 C -0.14 -2.40 1.87 -90.62 -0.17 -2.57 16 22 H 0.15 2.99 5.29 -51.93 -0.27 2.71 16 23 C 0.45 7.19 2.69 37.16 0.10 7.29 16 24 F -0.19 -3.13 16.80 2.25 0.04 -3.09 16 25 F -0.19 -3.05 16.80 2.25 0.04 -3.01 16 26 F -0.19 -2.92 16.28 2.25 0.04 -2.89 16 27 C -0.09 -1.52 4.17 -26.73 -0.11 -1.63 16 28 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.11 2.81 5.49 -51.93 -0.29 2.52 16 34 H 0.07 1.63 7.36 -51.93 -0.38 1.25 16 35 H 0.27 6.42 8.32 -40.82 -0.34 6.08 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.10 2.07 5.72 -51.93 -0.30 1.77 16 38 H 0.07 1.45 7.22 -51.93 -0.37 1.08 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.06 0.95 7.80 -51.93 -0.41 0.54 16 41 H 0.06 0.90 7.80 -51.93 -0.41 0.50 16 42 H 0.07 0.97 7.80 -51.93 -0.41 0.57 16 43 H 0.07 1.21 7.80 -51.93 -0.41 0.81 16 LS Contribution 345.89 15.07 5.21 5.21 Total: -1.00 -26.03 345.89 -5.44 -31.47 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -6.07 Total: 6.41 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: 0.27 Total: 4.68 kcal Atomic # 7 Polarization: -31.32 SS G_CDS: 0.35 Total: -30.97 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.29 Total: -21.96 kcal Atomic # 9 Polarization: -9.10 SS G_CDS: 0.11 Total: -8.99 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -26.03 -5.44 -31.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317174153.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -214.554 kcal (2) G-P(sol) polarization free energy of solvation -26.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -246.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds