Wall clock time and date at job start Tue Mar 31 2020 14:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 114.00112 * 2 1 4 4 C 1.52999 * 109.47366 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46879 * 64.99865 * 4 3 2 6 6 C 1.37093 * 120.00294 * 269.99907 * 5 4 3 7 7 H 1.08005 * 120.00476 * 142.16940 * 6 5 4 8 8 C 1.38952 * 120.00013 * 322.17438 * 6 5 4 9 9 N 1.31413 * 119.99686 * 339.72247 * 8 6 5 10 10 Si 1.86791 * 120.00310 * 159.72530 * 8 6 5 11 11 H 1.48501 * 109.47133 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.47237 * 119.99759 * 10 8 6 13 13 H 1.48503 * 109.47390 * 239.99919 * 10 8 6 14 14 C 1.34783 * 120.00088 * 90.00344 * 5 4 3 15 15 O 1.21291 * 119.99818 * 4.70850 * 14 5 4 16 16 C 1.50694 * 120.00153 * 184.71863 * 14 5 4 17 17 H 1.08994 * 109.47394 * 53.68402 * 16 14 5 18 18 C 1.53009 * 109.46943 * 293.68654 * 16 14 5 19 19 C 1.53002 * 109.46837 * 300.00066 * 18 16 14 20 20 C 1.53004 * 109.47290 * 299.99940 * 19 18 16 21 21 C 1.52996 * 109.47094 * 60.00019 * 20 19 18 22 22 H 1.09003 * 109.47326 * 60.00100 * 21 20 19 23 23 C 1.52997 * 109.47293 * 180.02562 * 21 20 19 24 24 F 1.39902 * 109.47221 * 179.97438 * 23 21 20 25 25 F 1.39900 * 109.46866 * 300.00216 * 23 21 20 26 26 F 1.39898 * 109.47300 * 59.99955 * 23 21 20 27 27 C 1.52997 * 109.47156 * 173.69036 * 16 14 5 28 28 H 1.08995 * 109.47075 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47065 * 300.00148 * 1 2 3 30 30 H 1.08995 * 109.47104 * 60.00099 * 1 2 3 31 31 H 1.09002 * 109.47173 * 59.99711 * 3 2 1 32 32 H 1.09005 * 109.47066 * 300.00617 * 3 2 1 33 33 H 1.08999 * 109.47254 * 305.00108 * 4 3 2 34 34 H 1.09002 * 109.46797 * 184.99939 * 4 3 2 35 35 H 0.97001 * 120.00453 * 185.02227 * 9 8 6 36 36 H 1.08994 * 109.46922 * 180.02562 * 18 16 14 37 37 H 1.09004 * 109.46862 * 59.99683 * 18 16 14 38 38 H 1.09003 * 109.47033 * 59.99781 * 19 18 16 39 39 H 1.09000 * 109.47271 * 179.97438 * 19 18 16 40 40 H 1.08994 * 109.47272 * 180.02562 * 20 19 18 41 41 H 1.09002 * 109.46580 * 300.00279 * 20 19 18 42 42 H 1.09004 * 109.47347 * 179.97438 * 27 16 14 43 43 H 1.09000 * 109.46784 * 299.99184 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.0980 -0.7990 -1.3346 7 1 3.8194 -1.3112 -2.2437 8 6 4.5792 -1.5216 -0.2496 9 7 5.2791 -0.9171 0.6840 10 14 4.2314 -3.3521 -0.1183 11 1 3.4282 -3.7886 -1.2886 12 1 5.5145 -4.0992 -0.0916 13 1 3.4743 -3.6239 1.1301 14 6 4.2634 1.3329 -2.3200 15 8 4.2389 2.5416 -2.2218 16 6 4.6141 0.6910 -3.6375 17 1 3.8310 -0.0131 -3.9186 18 6 5.9447 -0.0527 -3.5043 19 6 7.0440 0.9357 -3.1098 20 6 7.1690 2.0159 -4.1862 21 6 5.8385 2.7594 -4.3194 22 1 5.5847 3.2238 -3.3665 23 6 5.9632 3.8392 -5.3962 24 9 4.7464 4.5187 -5.5185 25 9 6.9685 4.7429 -5.0360 26 9 6.2886 3.2428 -6.6192 27 6 4.7392 1.7711 -4.7139 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.8508 0.5685 0.8427 34 1 3.9784 2.1766 0.0902 35 1 5.6767 -1.4331 1.4028 36 1 6.1986 -0.5166 -4.4573 37 1 5.8556 -0.8221 -2.7374 38 1 6.7902 1.4001 -2.1568 39 1 7.9918 0.4060 -3.0144 40 1 7.9524 2.7197 -3.9054 41 1 7.4227 1.5515 -5.1391 42 1 4.9933 1.3069 -5.6668 43 1 3.7913 2.3008 -4.8088 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000317174153.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:16 Heat of formation + Delta-G solvation = -259.127815 kcal Electronic energy + Delta-G solvation = -30195.073055 eV Core-core repulsion = 25631.459345 eV Total energy + Delta-G solvation = -4563.613710 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -51.04982 -48.54066 -48.50149 -41.29955 -38.97411 -37.90653 -36.48860 -33.45862 -32.94130 -31.91495 -30.54540 -27.27481 -26.61350 -26.50457 -24.78132 -23.12069 -22.82915 -21.58982 -20.54643 -19.33646 -19.18570 -18.59102 -18.20625 -17.57375 -17.06354 -16.86320 -16.22500 -16.10476 -15.99363 -15.71678 -15.49335 -15.38715 -15.12097 -14.96549 -14.71615 -14.70123 -14.65532 -14.47535 -14.10541 -13.59349 -13.43496 -13.24523 -13.01889 -12.93928 -12.83749 -12.82018 -12.67908 -12.46288 -12.33609 -12.02640 -11.86986 -11.71223 -11.67969 -11.20288 -11.05889 -10.80376 -10.50029 -9.98416 -9.28032 -8.15212 -5.84214 1.45716 1.55197 1.63481 1.86402 2.11602 2.41993 2.89324 2.97557 3.06954 3.11901 3.19966 3.30738 3.86759 3.88807 4.08870 4.27601 4.30188 4.32550 4.38432 4.50862 4.53155 4.55386 4.57691 4.63575 4.65529 4.73448 4.76455 4.82832 4.92262 5.02728 5.10139 5.20775 5.29667 5.35247 5.42845 5.56174 5.65968 5.69630 6.15787 6.44220 6.54127 7.29517 7.73398 8.15050 8.88259 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.016352 B = 0.004656 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.918181 B = 6012.763886 C = 6934.392488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.393 6.393 3 C 0.066 3.934 4 C 0.108 3.892 5 N -0.438 5.438 6 C -0.316 4.316 7 H 0.092 0.908 8 C 0.016 3.984 9 N -0.894 5.894 10 Si 0.966 3.034 11 H -0.260 1.260 12 H -0.282 1.282 13 H -0.290 1.290 14 C 0.468 3.532 15 O -0.628 6.628 16 C -0.080 4.080 17 H 0.094 0.906 18 C -0.109 4.109 19 C -0.105 4.105 20 C -0.106 4.106 21 C -0.142 4.142 22 H 0.121 0.879 23 C 0.458 3.542 24 F -0.192 7.192 25 F -0.190 7.190 26 F -0.182 7.182 27 C -0.087 4.087 28 H 0.092 0.908 29 H 0.049 0.951 30 H 0.040 0.960 31 H 0.061 0.939 32 H 0.031 0.969 33 H 0.094 0.906 34 H 0.057 0.943 35 H 0.267 0.733 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.029 0.971 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.024 1.427 -7.988 8.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.312 6.312 3 C -0.012 4.012 4 C -0.016 4.016 5 N -0.154 5.154 6 C -0.444 4.444 7 H 0.109 0.891 8 C -0.187 4.187 9 N -0.532 5.532 10 Si 0.792 3.208 11 H -0.184 1.184 12 H -0.208 1.208 13 H -0.216 1.216 14 C 0.259 3.741 15 O -0.518 6.518 16 C -0.101 4.101 17 H 0.112 0.888 18 C -0.147 4.147 19 C -0.142 4.142 20 C -0.143 4.143 21 C -0.161 4.161 22 H 0.139 0.861 23 C 0.404 3.596 24 F -0.174 7.174 25 F -0.172 7.172 26 F -0.164 7.164 27 C -0.125 4.125 28 H 0.111 0.889 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.049 0.951 33 H 0.112 0.888 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.048 0.952 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.109 0.891 42 H 0.115 0.885 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.899 1.807 -7.727 7.986 hybrid contribution -0.475 -0.153 0.529 0.728 sum -1.375 1.654 -7.198 7.512 Atomic orbital electron populations 1.22875 0.80879 1.03249 1.00152 1.88084 1.20197 1.27692 1.95262 1.22806 0.94670 0.84592 0.99105 1.21388 0.91234 0.97851 0.91156 1.43476 1.56139 1.06507 1.09307 1.19372 1.42541 0.80778 1.01676 0.89089 1.25815 0.94328 1.02679 0.95863 1.69914 1.30932 1.37629 1.14770 0.85281 0.77782 0.79426 0.78288 1.18388 1.20838 1.21642 1.20973 0.78913 0.86432 0.87812 1.90371 1.59442 1.15762 1.86182 1.20947 1.00236 0.97327 0.91562 0.88832 1.21552 0.91670 0.98217 1.03212 1.21330 0.99518 0.96351 0.97017 1.21554 0.93878 0.97901 1.00997 1.22820 1.00126 0.95041 0.98115 0.86146 1.20784 0.72813 0.83023 0.83003 1.93141 1.45718 1.82104 1.96400 1.93131 1.61905 1.70389 1.91765 1.93132 1.92587 1.83361 1.47276 1.21319 0.97263 0.95297 0.98575 0.88904 0.93292 0.94141 0.92142 0.95080 0.88819 0.92441 0.92359 0.89361 0.90246 0.95192 0.90412 0.91028 0.89133 0.88533 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.73 11.01 113.37 1.25 1.97 16 2 O -0.39 -15.97 10.18 -148.98 -1.52 -17.48 16 3 C 0.07 2.64 6.28 71.98 0.45 3.09 16 4 C 0.11 5.04 5.47 86.38 0.47 5.51 16 5 N -0.44 -20.61 2.50 -635.54 -1.59 -22.20 16 6 C -0.32 -14.83 6.04 84.04 0.51 -14.32 16 7 H 0.09 4.11 6.75 -2.91 -0.02 4.09 16 8 C 0.02 0.75 4.98 84.93 0.42 1.17 16 9 N -0.89 -45.77 11.41 21.66 0.25 -45.52 16 10 Si 0.97 39.18 29.60 68.60 2.03 41.21 16 11 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 12 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 13 H -0.29 -12.13 7.11 99.48 0.71 -11.43 16 14 C 0.47 20.78 5.56 87.65 0.49 21.27 16 15 O -0.63 -30.24 13.01 -3.06 -0.04 -30.28 16 16 C -0.08 -2.84 2.23 -11.54 -0.03 -2.86 16 17 H 0.09 3.21 7.48 -2.39 -0.02 3.19 16 18 C -0.11 -3.60 5.21 30.60 0.16 -3.44 16 19 C -0.10 -3.45 5.70 30.60 0.17 -3.28 16 20 C -0.11 -3.02 4.96 30.59 0.15 -2.86 16 21 C -0.14 -4.57 1.87 -10.80 -0.02 -4.59 16 22 H 0.12 4.78 5.29 -2.39 -0.01 4.77 16 23 C 0.46 13.77 2.69 71.98 0.19 13.97 16 24 F -0.19 -6.22 16.80 44.97 0.76 -5.46 16 25 F -0.19 -5.80 16.80 44.97 0.76 -5.04 16 26 F -0.18 -4.97 16.28 44.97 0.73 -4.24 16 27 C -0.09 -2.71 4.17 30.59 0.13 -2.58 16 28 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.05 1.23 8.14 -2.38 -0.02 1.22 16 30 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.06 2.10 8.14 -2.39 -0.02 2.09 16 32 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.09 4.79 5.49 -2.39 -0.01 4.78 16 34 H 0.06 2.76 7.36 -2.39 -0.02 2.74 16 35 H 0.27 13.10 8.32 -92.71 -0.77 12.33 16 36 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.08 3.07 5.72 -2.38 -0.01 3.06 16 38 H 0.03 1.23 7.22 -2.39 -0.02 1.21 16 39 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.07 1.95 7.80 -2.39 -0.02 1.93 16 41 H 0.09 2.16 7.80 -2.39 -0.02 2.14 16 42 H 0.10 2.45 7.80 -2.38 -0.02 2.43 16 43 H 0.06 2.03 7.80 -2.39 -0.02 2.01 16 Total: -1.00 -56.76 345.89 6.76 -50.01 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: 1.03 Total: 25.95 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: 4.35 Total: 13.05 kcal Atomic # 7 Polarization: -66.38 SS G_CDS: -1.34 Total: -67.72 kcal Atomic # 8 Polarization: -46.20 SS G_CDS: -1.56 Total: -47.76 kcal Atomic # 9 Polarization: -16.99 SS G_CDS: 2.24 Total: -14.74 kcal Atomic # 14 Polarization: 39.18 SS G_CDS: 2.03 Total: 41.21 kcal Total: -56.76 6.76 -50.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317174153.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -209.120 kcal (2) G-P(sol) polarization free energy of solvation -56.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -265.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -259.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds