Wall clock time and date at job start Tue Mar 31 2020 14:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 114.00021 * 2 1 4 4 C 1.52992 * 109.47087 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47416 * 63.83589 * 4 3 2 6 6 C 1.37092 * 119.99497 * 292.30601 * 5 4 3 7 7 H 1.07999 * 120.00146 * 304.47170 * 6 5 4 8 8 C 1.38951 * 120.00226 * 124.48071 * 6 5 4 9 9 N 1.31409 * 120.00235 * 108.72767 * 8 6 5 10 10 Si 1.86802 * 119.99891 * 288.73234 * 8 6 5 11 11 H 1.48501 * 109.47044 * 59.99724 * 10 8 6 12 12 H 1.48496 * 109.47515 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47221 * 299.99953 * 10 8 6 14 14 C 1.34771 * 119.99977 * 112.30087 * 5 4 3 15 15 O 1.21291 * 119.99744 * 175.42255 * 14 5 4 16 16 C 1.50701 * 120.00334 * 355.42090 * 14 5 4 17 17 H 1.08998 * 109.47052 * 67.76479 * 16 14 5 18 18 C 1.53010 * 109.46710 * 307.76935 * 16 14 5 19 19 C 1.52998 * 109.46695 * 179.97438 * 18 16 14 20 20 C 1.53001 * 109.47274 * 59.99996 * 19 18 16 21 21 C 1.53000 * 109.46994 * 299.99932 * 20 19 18 22 22 H 1.09004 * 109.47355 * 299.99474 * 21 20 19 23 23 C 1.53001 * 109.46994 * 179.97438 * 21 20 19 24 24 F 1.39894 * 109.47296 * 299.99714 * 23 21 20 25 25 F 1.39898 * 109.47203 * 59.99921 * 23 21 20 26 26 F 1.39907 * 109.47050 * 179.97438 * 23 21 20 27 27 C 1.52991 * 109.47328 * 187.76823 * 16 14 5 28 28 H 1.09005 * 109.47352 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47662 * 300.00189 * 1 2 3 30 30 H 1.09008 * 109.46797 * 60.00521 * 1 2 3 31 31 H 1.09005 * 109.46971 * 59.99431 * 3 2 1 32 32 H 1.08996 * 109.46915 * 300.00209 * 3 2 1 33 33 H 1.09001 * 109.46902 * 183.84013 * 4 3 2 34 34 H 1.08999 * 109.47063 * 303.83170 * 4 3 2 35 35 H 0.97004 * 119.99855 * 184.87594 * 9 8 6 36 36 H 1.08998 * 109.46991 * 299.99581 * 18 16 14 37 37 H 1.08992 * 109.47508 * 60.00182 * 18 16 14 38 38 H 1.08996 * 109.47543 * 300.00024 * 19 18 16 39 39 H 1.09001 * 109.47121 * 179.97438 * 19 18 16 40 40 H 1.09008 * 109.47384 * 179.97438 * 20 19 18 41 41 H 1.08998 * 109.47308 * 59.99696 * 20 19 18 42 42 H 1.08995 * 109.47250 * 300.00031 * 27 16 14 43 43 H 1.09007 * 109.47163 * 60.00093 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9747 0.5387 -1.2388 6 6 3.6734 -0.7787 -1.4691 7 1 3.9622 -1.5322 -0.7512 8 6 2.9968 -1.1447 -2.6262 9 7 3.6276 -1.7936 -3.5789 10 14 1.1902 -0.7142 -2.8274 11 1 1.0227 0.7600 -2.7648 12 1 0.7060 -1.2116 -4.1401 13 1 0.4058 -1.3481 -1.7374 14 6 4.6748 1.2397 -2.1524 15 8 5.1099 0.6847 -3.1393 16 6 4.9172 2.7130 -1.9480 17 1 5.5839 2.8570 -1.0979 18 6 3.5855 3.4159 -1.6766 19 6 3.8316 4.9116 -1.4684 20 6 4.4735 5.5026 -2.7253 21 6 5.8051 4.7996 -2.9967 22 1 6.4718 4.9433 -2.1464 23 6 6.4466 5.3902 -4.2538 24 9 5.5909 5.2053 -5.3450 25 9 6.6716 6.7579 -4.0641 26 9 7.6645 4.7477 -4.5017 27 6 5.5587 3.3035 -3.2051 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.9785 2.1782 0.0695 34 1 3.8521 0.5858 0.8545 35 1 3.1759 -1.9869 -4.4153 36 1 2.9188 3.2719 -2.5268 37 1 3.1285 2.9953 -0.7810 38 1 4.4983 5.0553 -0.6182 39 1 2.8830 5.4125 -1.2755 40 1 4.6485 6.5683 -2.5771 41 1 3.8069 5.3590 -3.5756 42 1 6.5073 2.8027 -3.3985 43 1 4.8919 3.1595 -4.0553 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000317174154.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:20 Heat of formation + Delta-G solvation = -201.578182 kcal Electronic energy + Delta-G solvation = -30171.198961 eV Core-core repulsion = 25610.080790 eV Total energy + Delta-G solvation = -4561.118171 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.04554 -47.54549 -47.48389 -39.70720 -37.56468 -36.84489 -34.37027 -32.72663 -31.52394 -30.69646 -29.05425 -26.10712 -25.45779 -25.02113 -22.91028 -21.98246 -21.83453 -20.18457 -19.09789 -18.20313 -18.12464 -17.56404 -16.71493 -16.15169 -15.96135 -15.15622 -14.93501 -14.79513 -14.56245 -14.39918 -14.23849 -14.09687 -13.92581 -13.78564 -13.68277 -13.63701 -13.53681 -13.36896 -12.95919 -12.33068 -12.21831 -11.99555 -11.91595 -11.66799 -11.40396 -11.30365 -11.16255 -10.98979 -10.84859 -10.70577 -10.52612 -10.17718 -10.09383 -9.94267 -9.75510 -8.96419 -8.42011 -7.93046 -7.18543 -6.59519 -3.49060 2.81732 3.32585 3.49852 3.52142 3.81825 3.99326 4.03676 4.10472 4.32900 4.44962 4.67124 4.73653 4.80559 4.97042 5.06932 5.19369 5.29392 5.34696 5.39220 5.50475 5.56336 5.60934 5.70023 5.74760 5.82755 5.86342 5.92371 5.95693 5.99321 6.02553 6.11594 6.19629 6.24048 6.30002 6.46656 6.58912 6.66494 7.56562 7.80910 8.49255 9.10903 9.34818 9.59516 10.26545 10.46878 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.017986 B = 0.004561 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.432889 B = 6138.140884 C = 6801.986363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.339 6.339 3 C 0.045 3.955 4 C 0.082 3.918 5 N -0.435 5.435 6 C -0.436 4.436 7 H 0.079 0.921 8 C 0.175 3.825 9 N -0.709 5.709 10 Si 0.797 3.203 11 H -0.281 1.281 12 H -0.314 1.314 13 H -0.255 1.255 14 C 0.461 3.539 15 O -0.536 6.536 16 C -0.101 4.101 17 H 0.085 0.915 18 C -0.142 4.142 19 C -0.111 4.111 20 C -0.118 4.118 21 C -0.131 4.131 22 H 0.112 0.888 23 C 0.453 3.547 24 F -0.182 7.182 25 F -0.190 7.190 26 F -0.183 7.183 27 C -0.094 4.094 28 H 0.082 0.918 29 H 0.030 0.970 30 H 0.029 0.971 31 H 0.038 0.962 32 H 0.045 0.955 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.271 0.729 36 H 0.066 0.934 37 H 0.093 0.907 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.640 15.139 5.090 15.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.256 6.256 3 C -0.032 4.032 4 C -0.041 4.041 5 N -0.157 5.157 6 C -0.555 4.555 7 H 0.096 0.904 8 C -0.052 4.052 9 N -0.328 5.328 10 Si 0.621 3.379 11 H -0.207 1.207 12 H -0.243 1.243 13 H -0.181 1.181 14 C 0.249 3.751 15 O -0.415 6.415 16 C -0.123 4.123 17 H 0.103 0.897 18 C -0.179 4.179 19 C -0.149 4.149 20 C -0.156 4.156 21 C -0.151 4.151 22 H 0.130 0.870 23 C 0.399 3.601 24 F -0.163 7.163 25 F -0.171 7.171 26 F -0.164 7.164 27 C -0.132 4.132 28 H 0.101 0.899 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.111 0.889 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.102 0.898 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.160 14.482 4.403 15.137 hybrid contribution -1.455 0.743 -0.399 1.681 sum -1.615 15.225 4.004 15.825 Atomic orbital electron populations 1.22809 0.83849 1.02153 0.98437 1.88244 1.17001 1.26278 1.94117 1.23079 0.95946 0.85653 0.98569 1.22225 0.91357 0.97775 0.92750 1.43088 1.46733 1.10390 1.15496 1.17402 1.47583 0.81152 1.09315 0.90371 1.25449 0.97233 0.89706 0.92832 1.70822 1.35861 1.24919 1.01244 0.88185 0.94519 0.79680 0.75485 1.20713 1.24345 1.18097 1.20345 0.81174 0.86981 0.86567 1.90642 1.51208 1.70464 1.29141 1.21239 0.97289 0.95600 0.98158 0.89678 1.22294 0.97295 0.94434 1.03923 1.21495 1.00660 0.96000 0.96738 1.21624 0.94487 0.99263 1.00224 1.22573 0.99553 0.99073 0.93882 0.86962 1.20699 0.76812 0.75739 0.86841 1.93169 1.70299 1.94934 1.57928 1.93146 1.94909 1.33741 1.95310 1.93186 1.46451 1.81531 1.95237 1.21354 1.03258 0.89488 0.99084 0.89904 0.95156 0.95223 0.94431 0.93698 0.90047 0.91883 0.91831 0.91542 0.88901 0.91491 0.91286 0.90975 0.90646 0.89767 0.90276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 8.68 101.05 0.88 1.29 16 2 O -0.34 -6.90 6.77 -35.23 -0.24 -7.14 16 3 C 0.05 0.79 4.80 37.15 0.18 0.97 16 4 C 0.08 1.49 5.34 -4.04 -0.02 1.46 16 5 N -0.43 -10.27 2.61 -114.82 -0.30 -10.57 16 6 C -0.44 -12.05 7.41 -14.94 -0.11 -12.16 16 7 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 8 C 0.17 4.91 4.32 -17.47 -0.08 4.83 16 9 N -0.71 -20.69 13.56 55.50 0.75 -19.93 16 10 Si 0.80 19.94 24.07 -169.99 -4.09 15.85 16 11 H -0.28 -7.01 6.62 56.52 0.37 -6.63 16 12 H -0.31 -8.11 7.11 56.52 0.40 -7.71 16 13 H -0.26 -5.96 4.74 56.52 0.27 -5.69 16 14 C 0.46 10.79 6.89 -10.99 -0.08 10.71 16 15 O -0.54 -15.09 14.92 5.55 0.08 -15.01 16 16 C -0.10 -1.68 1.76 -91.77 -0.16 -1.85 16 17 H 0.09 1.23 7.82 -51.93 -0.41 0.83 16 18 C -0.14 -2.03 4.15 -26.73 -0.11 -2.14 16 19 C -0.11 -1.16 5.92 -26.73 -0.16 -1.32 16 20 C -0.12 -1.27 4.96 -26.73 -0.13 -1.41 16 21 C -0.13 -1.59 2.17 -90.60 -0.20 -1.79 16 22 H 0.11 1.15 8.14 -51.93 -0.42 0.72 16 23 C 0.45 5.93 2.69 37.16 0.10 6.03 16 24 F -0.18 -2.63 16.28 2.25 0.04 -2.59 16 25 F -0.19 -2.34 16.80 2.25 0.04 -2.30 16 26 F -0.18 -2.61 16.80 2.25 0.04 -2.57 16 27 C -0.09 -1.50 3.57 -26.71 -0.10 -1.60 16 28 H 0.08 1.37 7.39 -51.93 -0.38 0.99 16 29 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.03 0.51 6.69 -51.92 -0.35 0.16 16 31 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.04 0.82 6.33 -51.93 -0.33 0.50 16 33 H 0.08 1.19 4.49 -51.93 -0.23 0.95 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.27 7.38 8.32 -40.82 -0.34 7.04 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.09 1.30 2.77 -51.93 -0.14 1.15 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.66 7.80 -51.92 -0.41 0.25 16 41 H 0.07 0.88 7.80 -51.93 -0.41 0.47 16 42 H 0.08 1.46 7.67 -51.93 -0.40 1.06 16 43 H 0.08 1.42 7.80 -51.93 -0.41 1.01 16 LS Contribution 332.87 15.07 5.02 5.02 Total: -1.00 -32.55 332.87 -4.78 -37.33 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -6.14 Total: -1.14 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: 0.02 Total: 3.05 kcal Atomic # 7 Polarization: -30.95 SS G_CDS: 0.45 Total: -30.50 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.16 Total: -22.15 kcal Atomic # 9 Polarization: -7.58 SS G_CDS: 0.11 Total: -7.46 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.09 Total: 15.85 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.55 -4.78 -37.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317174154.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.247 kcal (2) G-P(sol) polarization free energy of solvation -32.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds