Wall clock time and date at job start Tue Mar 31 2020 14:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 114.00021 * 2 1 4 4 C 1.52992 * 109.47087 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47416 * 63.83589 * 4 3 2 6 6 C 1.37092 * 119.99497 * 292.30601 * 5 4 3 7 7 H 1.07999 * 120.00146 * 304.47170 * 6 5 4 8 8 C 1.38951 * 120.00226 * 124.48071 * 6 5 4 9 9 N 1.31409 * 120.00235 * 108.72767 * 8 6 5 10 10 Si 1.86802 * 119.99891 * 288.73234 * 8 6 5 11 11 H 1.48501 * 109.47044 * 59.99724 * 10 8 6 12 12 H 1.48496 * 109.47515 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47221 * 299.99953 * 10 8 6 14 14 C 1.34771 * 119.99977 * 112.30087 * 5 4 3 15 15 O 1.21291 * 119.99744 * 175.42255 * 14 5 4 16 16 C 1.50701 * 120.00334 * 355.42090 * 14 5 4 17 17 H 1.08998 * 109.47052 * 67.76479 * 16 14 5 18 18 C 1.53010 * 109.46710 * 307.76935 * 16 14 5 19 19 C 1.52998 * 109.46695 * 179.97438 * 18 16 14 20 20 C 1.53001 * 109.47274 * 59.99996 * 19 18 16 21 21 C 1.53000 * 109.46994 * 299.99932 * 20 19 18 22 22 H 1.09004 * 109.47355 * 299.99474 * 21 20 19 23 23 C 1.53001 * 109.46994 * 179.97438 * 21 20 19 24 24 F 1.39894 * 109.47296 * 299.99714 * 23 21 20 25 25 F 1.39898 * 109.47203 * 59.99921 * 23 21 20 26 26 F 1.39907 * 109.47050 * 179.97438 * 23 21 20 27 27 C 1.52991 * 109.47328 * 187.76823 * 16 14 5 28 28 H 1.09005 * 109.47352 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47662 * 300.00189 * 1 2 3 30 30 H 1.09008 * 109.46797 * 60.00521 * 1 2 3 31 31 H 1.09005 * 109.46971 * 59.99431 * 3 2 1 32 32 H 1.08996 * 109.46915 * 300.00209 * 3 2 1 33 33 H 1.09001 * 109.46902 * 183.84013 * 4 3 2 34 34 H 1.08999 * 109.47063 * 303.83170 * 4 3 2 35 35 H 0.97004 * 119.99855 * 184.87594 * 9 8 6 36 36 H 1.08998 * 109.46991 * 299.99581 * 18 16 14 37 37 H 1.08992 * 109.47508 * 60.00182 * 18 16 14 38 38 H 1.08996 * 109.47543 * 300.00024 * 19 18 16 39 39 H 1.09001 * 109.47121 * 179.97438 * 19 18 16 40 40 H 1.09008 * 109.47384 * 179.97438 * 20 19 18 41 41 H 1.08998 * 109.47308 * 59.99696 * 20 19 18 42 42 H 1.08995 * 109.47250 * 300.00031 * 27 16 14 43 43 H 1.09007 * 109.47163 * 60.00093 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9747 0.5387 -1.2388 6 6 3.6734 -0.7787 -1.4691 7 1 3.9622 -1.5322 -0.7512 8 6 2.9968 -1.1447 -2.6262 9 7 3.6276 -1.7936 -3.5789 10 14 1.1902 -0.7142 -2.8274 11 1 1.0227 0.7600 -2.7648 12 1 0.7060 -1.2116 -4.1401 13 1 0.4058 -1.3481 -1.7374 14 6 4.6748 1.2397 -2.1524 15 8 5.1099 0.6847 -3.1393 16 6 4.9172 2.7130 -1.9480 17 1 5.5839 2.8570 -1.0979 18 6 3.5855 3.4159 -1.6766 19 6 3.8316 4.9116 -1.4684 20 6 4.4735 5.5026 -2.7253 21 6 5.8051 4.7996 -2.9967 22 1 6.4718 4.9433 -2.1464 23 6 6.4466 5.3902 -4.2538 24 9 5.5909 5.2053 -5.3450 25 9 6.6716 6.7579 -4.0641 26 9 7.6645 4.7477 -4.5017 27 6 5.5587 3.3035 -3.2051 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.9785 2.1782 0.0695 34 1 3.8521 0.5858 0.8545 35 1 3.1759 -1.9869 -4.4153 36 1 2.9188 3.2719 -2.5268 37 1 3.1285 2.9953 -0.7810 38 1 4.4983 5.0553 -0.6182 39 1 2.8830 5.4125 -1.2755 40 1 4.6485 6.5683 -2.5771 41 1 3.8069 5.3590 -3.5756 42 1 6.5073 2.8027 -3.3985 43 1 4.8919 3.1595 -4.0553 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000317174154.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:19 Heat of formation + Delta-G solvation = -223.681823 kcal Electronic energy + Delta-G solvation = -30172.157447 eV Core-core repulsion = 25610.080790 eV Total energy + Delta-G solvation = -4562.076657 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -51.10256 -48.58808 -48.57159 -41.18379 -38.88050 -38.35564 -36.16609 -34.65219 -32.80037 -31.86420 -30.58229 -27.51006 -26.77763 -26.55448 -24.32893 -23.31563 -22.99604 -21.32364 -20.69431 -19.28453 -19.21303 -18.92613 -18.37488 -17.51644 -17.48087 -16.70502 -16.36987 -16.08328 -16.03457 -15.76081 -15.57821 -15.41738 -15.25021 -15.03492 -14.88651 -14.81799 -14.74119 -14.69000 -14.24932 -13.97545 -13.51892 -13.49000 -13.31337 -12.96320 -12.79938 -12.76178 -12.53061 -12.40706 -12.26259 -12.10836 -11.78312 -11.63981 -11.59705 -11.31562 -11.08983 -10.47703 -10.35208 -9.85549 -9.11863 -8.72949 -5.58915 1.27745 1.42137 1.51898 1.78975 2.19708 2.36179 2.60710 2.80280 2.96203 3.07808 3.16223 3.32499 3.71714 3.77685 3.90192 4.10797 4.20752 4.25322 4.30222 4.33961 4.39237 4.41737 4.49762 4.51936 4.55023 4.62843 4.67523 4.77822 4.84868 5.00082 5.04562 5.09732 5.10936 5.17523 5.28177 5.34226 5.46497 5.49713 6.38589 6.51037 7.12907 7.34846 7.65766 8.29196 8.45709 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.017986 B = 0.004561 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.432889 B = 6138.140884 C = 6801.986363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.377 6.377 3 C 0.043 3.957 4 C 0.082 3.918 5 N -0.445 5.445 6 C -0.456 4.456 7 H 0.040 0.960 8 C 0.140 3.860 9 N -0.756 5.756 10 Si 0.857 3.143 11 H -0.277 1.277 12 H -0.329 1.329 13 H -0.228 1.228 14 C 0.444 3.556 15 O -0.599 6.599 16 C -0.090 4.090 17 H 0.120 0.880 18 C -0.138 4.138 19 C -0.101 4.101 20 C -0.119 4.119 21 C -0.120 4.120 22 H 0.145 0.855 23 C 0.451 3.549 24 F -0.194 7.194 25 F -0.180 7.180 26 F -0.193 7.193 27 C -0.090 4.090 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.023 0.977 31 H 0.089 0.911 32 H 0.036 0.964 33 H 0.126 0.874 34 H 0.062 0.938 35 H 0.272 0.728 36 H 0.038 0.962 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.953 18.902 7.892 20.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.296 6.296 3 C -0.034 4.034 4 C -0.040 4.040 5 N -0.166 5.166 6 C -0.576 4.576 7 H 0.058 0.942 8 C -0.084 4.084 9 N -0.378 5.378 10 Si 0.682 3.318 11 H -0.203 1.203 12 H -0.260 1.260 13 H -0.152 1.152 14 C 0.235 3.765 15 O -0.482 6.482 16 C -0.111 4.111 17 H 0.138 0.862 18 C -0.176 4.176 19 C -0.138 4.138 20 C -0.156 4.156 21 C -0.139 4.139 22 H 0.162 0.838 23 C 0.397 3.603 24 F -0.176 7.176 25 F -0.162 7.162 26 F -0.175 7.175 27 C -0.128 4.128 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.042 0.958 31 H 0.107 0.893 32 H 0.054 0.946 33 H 0.144 0.856 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.056 0.944 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.111 0.889 40 H 0.119 0.881 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.515 18.264 7.255 19.710 hybrid contribution -0.945 -0.464 -1.267 1.647 sum -2.460 17.800 5.988 18.940 Atomic orbital electron populations 1.22950 0.82301 1.02557 1.00070 1.88179 1.18889 1.28169 1.94344 1.23176 0.94751 0.85030 1.00465 1.22398 0.92839 0.99419 0.89375 1.43209 1.46688 1.09508 1.17236 1.17082 1.49037 0.82821 1.08645 0.94227 1.26011 1.00224 0.89589 0.92604 1.70895 1.37155 1.27882 1.01902 0.87386 0.89550 0.79613 0.75236 1.20289 1.25997 1.15210 1.21585 0.79632 0.89876 0.85451 1.90603 1.53308 1.72581 1.31743 1.21190 0.99782 0.90579 0.99560 0.86195 1.22273 0.94810 0.97468 1.03000 1.21496 1.02651 0.92364 0.97308 1.21695 0.93019 1.00722 1.00162 1.22560 1.01327 0.95763 0.94235 0.83752 1.20895 0.76352 0.76122 0.86894 1.93150 1.70653 1.95046 1.58745 1.93161 1.94833 1.32951 1.95212 1.93169 1.47143 1.81831 1.95337 1.21202 1.01229 0.92545 0.97840 0.90230 0.91175 0.95841 0.89327 0.94618 0.85646 0.91979 0.91743 0.94357 0.88098 0.88369 0.88901 0.88130 0.92143 0.92105 0.93429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 8.68 113.37 0.98 1.52 16 2 O -0.38 -14.51 6.77 -148.98 -1.01 -15.52 16 3 C 0.04 1.35 4.80 71.98 0.35 1.69 16 4 C 0.08 2.76 5.34 86.38 0.46 3.22 16 5 N -0.44 -21.16 2.61 -635.56 -1.66 -22.81 16 6 C -0.46 -26.24 7.41 84.04 0.62 -25.62 16 7 H 0.04 2.53 8.06 -2.91 -0.02 2.50 16 8 C 0.14 8.20 4.32 84.93 0.37 8.57 16 9 N -0.76 -46.77 13.56 21.66 0.29 -46.48 16 10 Si 0.86 42.64 24.07 68.60 1.65 44.30 16 11 H -0.28 -13.46 6.62 99.48 0.66 -12.81 16 12 H -0.33 -17.01 7.11 99.48 0.71 -16.30 16 13 H -0.23 -10.23 4.74 99.48 0.47 -9.76 16 14 C 0.44 21.15 6.89 87.66 0.60 21.75 16 15 O -0.60 -35.67 14.92 -3.06 -0.05 -35.71 16 16 C -0.09 -2.83 1.76 -11.54 -0.02 -2.85 16 17 H 0.12 2.98 7.82 -2.39 -0.02 2.96 16 18 C -0.14 -3.48 4.15 30.60 0.13 -3.35 16 19 C -0.10 -1.53 5.92 30.59 0.18 -1.35 16 20 C -0.12 -2.05 4.96 30.59 0.15 -1.90 16 21 C -0.12 -2.56 2.17 -10.78 -0.02 -2.58 16 22 H 0.14 2.23 8.14 -2.38 -0.02 2.21 16 23 C 0.45 11.09 2.69 71.98 0.19 11.29 16 24 F -0.19 -5.57 16.28 44.97 0.73 -4.84 16 25 F -0.18 -3.92 16.80 44.97 0.76 -3.17 16 26 F -0.19 -5.41 16.80 44.97 0.76 -4.66 16 27 C -0.09 -2.85 3.57 30.61 0.11 -2.74 16 28 H 0.08 2.44 7.39 -2.38 -0.02 2.42 16 29 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.02 0.73 6.69 -2.38 -0.02 0.72 16 31 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 32 H 0.04 1.19 6.33 -2.39 -0.02 1.18 16 33 H 0.13 3.07 4.49 -2.39 -0.01 3.06 16 34 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.27 15.75 8.32 -92.71 -0.77 14.98 16 36 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.10 2.35 2.77 -2.39 -0.01 2.35 16 38 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.10 1.27 7.80 -2.38 -0.02 1.25 16 41 H 0.06 1.25 7.80 -2.39 -0.02 1.23 16 42 H 0.06 2.18 7.67 -2.39 -0.02 2.16 16 43 H 0.05 1.78 7.80 -2.38 -0.02 1.76 16 Total: -1.00 -78.88 332.87 6.33 -72.55 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: 0.75 Total: 8.68 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: 4.10 Total: 7.66 kcal Atomic # 7 Polarization: -67.93 SS G_CDS: -1.36 Total: -69.29 kcal Atomic # 8 Polarization: -50.17 SS G_CDS: -1.05 Total: -51.23 kcal Atomic # 9 Polarization: -14.91 SS G_CDS: 2.24 Total: -12.66 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 1.65 Total: 44.30 kcal Total: -78.88 6.33 -72.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317174154.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.134 kcal (2) G-P(sol) polarization free energy of solvation -78.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds