Wall clock time and date at job start Tue Mar 31 2020 14:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38488 * 126.33761 * 2 1 4 4 C 1.46892 * 126.46853 * 359.97438 * 3 2 1 5 5 O 1.35165 * 120.00400 * 179.97438 * 4 3 2 6 6 N 1.32507 * 119.99432 * 0.02562 * 4 3 2 7 7 C 1.32982 * 119.99769 * 185.30830 * 6 4 3 8 8 H 1.08009 * 120.00251 * 5.13427 * 7 6 4 9 9 C 1.40266 * 120.00445 * 185.13807 * 7 6 4 10 10 N 1.30896 * 119.99498 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00410 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47003 * 60.00299 * 11 9 7 13 13 H 1.48495 * 109.47164 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47283 * 300.00163 * 11 9 7 15 15 C 1.41517 * 107.07268 * 180.02562 * 3 2 1 16 16 N 1.30415 * 108.04383 * 359.97438 * 15 3 2 17 17 N 1.34434 * 126.33842 * 179.69061 * 2 1 3 18 18 C 1.46505 * 125.73314 * 359.97438 * 17 2 1 19 19 C 1.52994 * 109.47388 * 89.99547 * 18 17 2 20 20 O 1.42897 * 109.47266 * 180.02562 * 19 18 17 21 21 C 1.42899 * 114.00375 * 179.97438 * 20 19 18 22 22 H 1.09000 * 109.48063 * 310.03076 * 21 20 19 23 23 C 1.53089 * 109.48649 * 190.00473 * 21 20 19 24 24 C 1.53178 * 109.16553 * 182.41417 * 23 21 20 25 25 C 1.53172 * 109.03887 * 56.97731 * 24 23 21 26 26 C 1.53092 * 109.16212 * 303.01912 * 25 24 23 27 27 O 1.42901 * 109.41673 * 57.61075 * 26 25 24 28 28 H 1.08996 * 109.47207 * 90.02047 * 1 2 3 29 29 H 1.09008 * 109.46709 * 330.02474 * 1 2 3 30 30 H 1.08990 * 109.47109 * 210.02500 * 1 2 3 31 31 H 0.96690 * 113.99734 * 84.98150 * 5 4 3 32 32 H 0.97005 * 120.00143 * 180.02562 * 10 9 7 33 33 H 1.07998 * 125.98006 * 179.97438 * 15 3 2 34 34 H 1.09000 * 109.47221 * 210.00003 * 18 17 2 35 35 H 1.09005 * 109.46727 * 329.99971 * 18 17 2 36 36 H 1.09000 * 109.47312 * 300.00400 * 19 18 17 37 37 H 1.09001 * 109.46713 * 60.00007 * 19 18 17 38 38 H 1.09007 * 109.51684 * 302.31732 * 23 21 20 39 39 H 1.08995 * 109.52315 * 62.43744 * 23 21 20 40 40 H 1.08997 * 109.54371 * 176.84784 * 24 23 21 41 41 H 1.09002 * 109.53934 * 297.10563 * 24 23 21 42 42 H 1.08999 * 109.52817 * 62.92415 * 25 24 23 43 43 H 1.08999 * 109.52362 * 183.05831 * 25 24 23 44 44 H 1.09004 * 109.48000 * 177.59591 * 26 25 24 45 45 H 1.09000 * 109.48332 * 297.61555 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3277 1.1156 0.0000 4 6 1.8934 2.5188 -0.0005 5 8 2.8118 3.5106 0.0001 6 7 0.6013 2.8124 -0.0006 7 6 0.2070 4.0779 -0.1076 8 1 0.9347 4.8578 -0.2777 9 6 -1.1539 4.4002 0.0005 10 7 -2.0357 3.4551 0.2071 11 14 -1.7076 6.1779 -0.1492 12 1 -1.3183 6.7071 -1.4810 13 1 -3.1832 6.2509 -0.0002 14 1 -1.0615 6.9888 0.9140 15 6 3.6636 0.6487 -0.0006 16 7 3.6358 -0.6552 -0.0004 17 7 2.3036 -1.0829 0.0058 18 6 1.8527 -2.4768 0.0139 19 6 1.6950 -2.9702 -1.4257 20 8 1.2546 -4.3296 -1.4178 21 6 1.0745 -4.8898 -2.7200 22 1 0.4660 -4.2169 -3.3242 23 6 0.3718 -6.2446 -2.6003 24 6 0.2366 -6.8659 -3.9939 25 6 1.6273 -6.9860 -4.6244 26 6 2.2814 -5.6025 -4.6661 27 8 2.3485 -5.0687 -3.3422 28 1 -0.3633 -0.0004 -1.0276 29 1 -0.3633 0.8903 0.5135 30 1 -0.3633 -0.8897 0.5142 31 1 3.1364 3.7465 -0.8797 32 1 -2.9769 3.6778 0.2815 33 1 4.5509 1.2643 -0.0012 34 1 2.5878 -3.0935 0.5310 35 1 0.8942 -2.5455 0.5285 36 1 0.9599 -2.3534 -1.9428 37 1 2.6535 -2.9014 -1.9403 38 1 0.9599 -6.9048 -1.9627 39 1 -0.6177 -6.1046 -2.1652 40 1 -0.2124 -7.8555 -3.9099 41 1 -0.3927 -6.2302 -4.6169 42 1 2.2408 -7.6611 -4.0278 43 1 1.5353 -7.3770 -5.6377 44 1 3.2883 -5.6886 -5.0747 45 1 1.6890 -4.9391 -5.2961 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330482667.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:03 Heat of formation + Delta-G solvation = -85.838033 kcal Electronic energy + Delta-G solvation = -27025.680504 eV Core-core repulsion = 23043.730694 eV Total energy + Delta-G solvation = -3981.949810 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.91730 -40.72075 -38.63959 -38.25670 -35.92655 -34.80393 -34.69649 -33.69871 -32.47063 -31.49013 -29.55658 -28.14521 -26.73545 -25.80233 -24.44949 -24.22448 -22.97786 -21.44571 -21.05650 -20.11479 -19.37644 -18.57544 -17.95702 -17.88683 -17.24440 -17.09274 -16.54150 -16.11406 -15.98684 -15.65387 -15.56077 -15.25139 -15.14097 -14.88045 -14.53485 -13.96237 -13.87453 -13.78532 -13.74181 -13.54422 -13.27256 -13.21312 -13.17735 -12.85971 -12.65274 -12.24102 -12.20094 -12.12165 -11.96924 -11.91605 -11.68050 -11.53860 -11.11192 -10.98583 -10.71987 -10.54891 -10.11006 -9.57337 -9.19358 -8.91336 -6.21680 0.83883 1.17068 1.37360 1.45062 1.51780 1.68443 2.14801 2.33688 2.36882 2.92300 3.48981 3.57606 3.72090 3.73495 3.85466 3.95036 3.96525 4.01423 4.04704 4.12905 4.16183 4.32880 4.38390 4.41916 4.56123 4.57971 4.59900 4.72624 4.75994 4.81662 4.87304 4.93794 4.98255 5.05693 5.06961 5.10023 5.30577 5.45133 5.58701 5.78918 5.80749 5.86798 6.09417 6.18862 6.34330 6.83252 6.95495 7.39556 8.05359 8.65531 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.016796 B = 0.002497 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.653308 B =11208.739320 C =12126.714161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.056 3.944 3 C -0.145 4.145 4 C 0.006 3.994 5 O -0.518 6.518 6 N -0.350 5.350 7 C -0.285 4.285 8 H 0.055 0.945 9 C 0.032 3.968 10 N -0.775 5.775 11 Si 1.008 2.992 12 H -0.254 1.254 13 H -0.252 1.252 14 H -0.261 1.261 15 C 0.042 3.958 16 N -0.322 5.322 17 N -0.369 5.369 18 C 0.141 3.859 19 C 0.063 3.937 20 O -0.371 6.371 21 C 0.248 3.752 22 H 0.058 0.942 23 C -0.136 4.136 24 C -0.118 4.118 25 C -0.155 4.155 26 C 0.061 3.939 27 O -0.433 6.433 28 H 0.062 0.938 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.341 0.659 32 H 0.300 0.700 33 H 0.194 0.806 34 H 0.105 0.895 35 H 0.115 0.885 36 H 0.054 0.946 37 H 0.048 0.952 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.099 0.901 44 H 0.105 0.895 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.210 -17.221 -9.563 19.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.071 4.071 3 C -0.157 4.157 4 C -0.190 4.190 5 O -0.320 6.320 6 N -0.074 5.074 7 C -0.441 4.441 8 H 0.073 0.927 9 C -0.190 4.190 10 N -0.399 5.399 11 Si 0.826 3.174 12 H -0.178 1.178 13 H -0.176 1.176 14 H -0.185 1.185 15 C -0.145 4.145 16 N -0.143 5.143 17 N -0.155 5.155 18 C 0.019 3.981 19 C -0.014 4.014 20 O -0.290 6.290 21 C 0.153 3.847 22 H 0.075 0.925 23 C -0.174 4.174 24 C -0.155 4.155 25 C -0.193 4.193 26 C -0.015 4.015 27 O -0.356 6.356 28 H 0.081 0.919 29 H 0.105 0.895 30 H 0.094 0.906 31 H 0.193 0.807 32 H 0.111 0.889 33 H 0.211 0.789 34 H 0.124 0.876 35 H 0.133 0.867 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.109 0.891 40 H 0.111 0.889 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.118 0.882 44 H 0.123 0.877 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.351 -19.074 -8.575 20.956 hybrid contribution 0.204 2.336 -0.922 2.519 sum -1.147 -16.739 -9.496 19.279 Atomic orbital electron populations 1.20293 0.86098 1.03817 1.02335 1.21415 0.94924 0.86058 1.04697 1.18821 0.92244 0.91269 1.13375 1.19716 0.83173 0.84852 1.31228 1.84870 1.60483 1.54879 1.31796 1.67753 1.14196 1.22329 1.03078 1.20723 0.93521 0.90978 1.38891 0.92728 1.27408 0.95013 1.05417 0.91208 1.69752 1.04221 1.37528 1.28356 0.84839 0.78363 0.73822 0.80365 1.17844 1.17563 1.18512 1.23998 0.97684 0.91524 1.01254 1.76780 0.97586 1.13356 1.26613 1.47895 1.03220 1.05375 1.59010 1.21374 1.02823 0.77151 0.96727 1.22588 0.99243 0.82512 0.97100 1.87886 1.86863 1.26272 1.27940 1.23236 0.84333 0.95211 0.81953 0.92480 1.22049 1.01557 0.94049 0.99757 1.21631 0.97345 1.02507 0.94057 1.22229 0.96739 0.97109 1.03221 1.22787 1.03000 0.94313 0.81412 1.87797 1.31316 1.84980 1.31465 0.91902 0.89533 0.90572 0.80717 0.88898 0.78947 0.87642 0.86668 0.92783 0.93316 0.90762 0.89087 0.88866 0.90742 0.91224 0.88241 0.87693 0.92352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.76 9.52 71.24 0.68 -2.08 16 2 C 0.06 2.49 7.03 42.22 0.30 2.79 16 3 C -0.14 -7.09 6.13 -20.14 -0.12 -7.22 16 4 C 0.01 0.30 7.76 86.86 0.67 0.97 16 5 O -0.52 -26.45 12.09 -84.43 -1.02 -27.47 16 6 N -0.35 -20.02 7.47 -299.98 -2.24 -22.26 16 7 C -0.28 -15.75 9.56 85.01 0.81 -14.94 16 8 H 0.06 3.02 7.03 -2.91 -0.02 3.00 16 9 C 0.03 1.56 5.53 85.33 0.47 2.03 16 10 N -0.78 -38.63 13.59 21.90 0.30 -38.33 16 11 Si 1.01 36.11 29.57 68.60 2.03 38.14 16 12 H -0.25 -8.79 7.11 99.48 0.71 -8.09 16 13 H -0.25 -8.10 7.11 99.48 0.71 -7.40 16 14 H -0.26 -9.32 7.11 99.48 0.71 -8.62 16 15 C 0.04 1.80 11.87 85.71 1.02 2.82 16 16 N -0.32 -13.43 12.49 -56.14 -0.70 -14.14 16 17 N -0.37 -14.37 3.58 -332.49 -1.19 -15.56 16 18 C 0.14 4.22 6.58 86.38 0.57 4.79 16 19 C 0.06 1.84 6.14 71.98 0.44 2.28 16 20 O -0.37 -9.91 10.25 -126.21 -1.29 -11.20 16 21 C 0.25 5.57 3.16 72.01 0.23 5.79 16 22 H 0.06 1.21 8.09 -2.39 -0.02 1.19 16 23 C -0.14 -2.22 5.79 30.68 0.18 -2.04 16 24 C -0.12 -1.31 6.03 30.71 0.19 -1.13 16 25 C -0.16 -1.77 6.14 30.68 0.19 -1.58 16 26 C 0.06 0.96 6.84 72.01 0.49 1.46 16 27 O -0.43 -10.63 10.25 -126.21 -1.29 -11.92 16 28 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 29 H 0.09 4.29 6.28 -2.38 -0.01 4.27 16 30 H 0.08 2.54 7.05 -2.39 -0.02 2.52 16 31 H 0.34 14.67 9.06 -74.06 -0.67 14.00 16 32 H 0.30 12.99 8.30 -92.70 -0.77 12.22 16 33 H 0.19 7.26 8.06 -2.91 -0.02 7.24 16 34 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 35 H 0.12 3.01 7.02 -2.38 -0.02 3.00 16 36 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.05 1.58 7.89 -2.39 -0.02 1.56 16 38 H 0.07 1.31 8.14 -2.38 -0.02 1.30 16 39 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.11 1.44 8.14 -2.38 -0.02 1.42 16 45 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -70.11 377.01 1.03 -69.07 By element: Atomic # 1 Polarization: 39.39 SS G_CDS: 0.34 Total: 39.73 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: 6.11 Total: -6.06 kcal Atomic # 7 Polarization: -86.45 SS G_CDS: -3.83 Total: -90.29 kcal Atomic # 8 Polarization: -46.99 SS G_CDS: -3.61 Total: -50.60 kcal Atomic # 14 Polarization: 36.11 SS G_CDS: 2.03 Total: 38.14 kcal Total: -70.11 1.03 -69.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330482667.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.765 kcal (2) G-P(sol) polarization free energy of solvation -70.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds