Wall clock time and date at job start Tue Mar 31 2020 14:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 120.00162 * 2 1 4 4 H 1.48502 * 109.47299 * 269.99691 * 3 2 1 5 5 H 1.48494 * 109.47309 * 30.00268 * 3 2 1 6 6 H 1.48501 * 109.46810 * 150.00053 * 3 2 1 7 7 C 1.37877 * 119.99366 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00522 * 359.71923 * 7 2 1 9 9 C 1.50701 * 119.99883 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.47111 * 179.72487 * 9 7 2 11 11 C 1.30099 * 120.00078 * 120.83722 * 10 9 7 12 12 O 1.35091 * 120.00265 * 186.46633 * 11 10 9 13 13 N 1.37341 * 119.99926 * 6.47294 * 11 10 9 14 14 C 1.46504 * 119.99595 * 185.51629 * 13 11 10 15 15 C 1.52998 * 109.46847 * 179.97438 * 14 13 11 16 16 C 1.53113 * 109.52747 * 294.68455 * 15 14 13 17 17 C 1.53036 * 109.28286 * 182.43754 * 16 15 14 18 18 N 1.46851 * 109.52099 * 59.17909 * 17 16 15 19 19 C 1.46893 * 111.00261 * 174.15961 * 18 17 16 20 20 C 1.53007 * 109.47419 * 201.89320 * 19 18 17 21 21 F 1.39902 * 109.46862 * 53.65437 * 20 19 18 22 22 F 1.39898 * 109.46871 * 173.65036 * 20 19 18 23 23 F 1.39898 * 109.46861 * 293.65239 * 20 19 18 24 24 C 1.46847 * 111.19866 * 298.25911 * 18 17 16 25 25 C 1.53039 * 109.52425 * 61.74071 * 24 18 17 26 26 H 0.97001 * 119.99647 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.46832 * 299.71967 * 9 7 2 28 28 H 1.09000 * 109.47491 * 59.71616 * 9 7 2 29 29 H 0.96699 * 114.00481 * 179.97438 * 12 11 10 30 30 H 0.96994 * 119.99938 * 5.51378 * 13 11 10 31 31 H 1.09004 * 109.47000 * 299.99471 * 14 13 11 32 32 H 1.09001 * 109.47501 * 59.99718 * 14 13 11 33 33 H 1.09000 * 109.52324 * 54.87516 * 15 14 13 34 34 H 1.08998 * 109.50360 * 302.38073 * 16 15 14 35 35 H 1.09003 * 109.50568 * 62.49868 * 16 15 14 36 36 H 1.08994 * 109.46167 * 299.16531 * 17 16 15 37 37 H 1.09000 * 109.45308 * 179.18331 * 17 16 15 38 38 H 1.09004 * 109.47309 * 321.89684 * 19 18 17 39 39 H 1.09003 * 109.47029 * 81.89083 * 19 18 17 40 40 H 1.08997 * 109.46238 * 301.72863 * 24 18 17 41 41 H 1.09001 * 109.46588 * 181.75731 * 24 18 17 42 42 H 1.08998 * 109.50264 * 180.88252 * 25 24 18 43 43 H 1.09001 * 109.50208 * 60.75919 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 0.0036 9 6 3.5115 -1.1943 0.0000 10 7 3.9997 -2.5755 0.0059 11 6 4.7613 -3.0004 -0.9594 12 8 5.1046 -4.3053 -1.0247 13 7 5.2166 -2.1221 -1.9121 14 6 5.9728 -2.6188 -3.0645 15 6 6.3578 -1.4444 -3.9663 16 6 5.0927 -0.8192 -4.5604 17 6 5.4870 0.3155 -5.5086 18 7 6.3419 -0.2141 -6.5788 19 6 6.6267 0.8181 -7.5844 20 6 7.0233 0.1502 -8.9027 21 9 6.0361 -0.7683 -9.2755 22 9 7.1538 1.1244 -9.8982 23 9 8.2426 -0.5161 -8.7395 24 6 7.5847 -0.7772 -6.0360 25 6 7.2529 -1.9445 -5.1035 26 1 -0.4850 0.8401 0.0004 27 1 3.8751 -0.6842 -0.8920 28 1 3.8746 -0.6767 0.8879 29 1 5.6718 -4.5258 -1.7761 30 1 5.0375 -1.1731 -1.8221 31 1 6.8753 -3.1219 -2.7173 32 1 5.3582 -3.3220 -3.6267 33 1 6.8946 -0.6971 -3.3820 34 1 4.5364 -1.5773 -5.1117 35 1 4.4710 -0.4229 -3.7576 36 1 6.0312 1.0797 -4.9538 37 1 4.5889 0.7532 -5.9444 38 1 5.7376 1.4292 -7.7398 39 1 7.4447 1.4487 -7.2361 40 1 8.1190 -0.0078 -5.4787 41 1 8.2103 -1.1329 -6.8547 42 1 8.1747 -2.3521 -4.6887 43 1 6.7307 -2.7203 -5.6634 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331119557.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:45 Heat of formation + Delta-G solvation = -161.154611 kcal Electronic energy + Delta-G solvation = -28081.346045 eV Core-core repulsion = 23554.273522 eV Total energy + Delta-G solvation = -4527.072522 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.39876 -47.98551 -47.79815 -39.87795 -38.78597 -35.88619 -34.81357 -32.85541 -31.89101 -31.25126 -29.48688 -27.76744 -25.96768 -23.64117 -23.34889 -22.70690 -22.02317 -20.22751 -19.58853 -18.86211 -18.81202 -18.36314 -17.75921 -16.89605 -16.27097 -15.95159 -15.50454 -15.13240 -14.87806 -14.75366 -14.61061 -14.45890 -14.28627 -14.07319 -14.01789 -13.98497 -13.95878 -13.59084 -13.34030 -13.19823 -12.71458 -12.65464 -12.41439 -12.30874 -12.22922 -12.05042 -11.53666 -11.02888 -11.01011 -10.74529 -10.69056 -10.61322 -10.32678 -9.64334 -9.40392 -9.00814 -8.65183 -8.21847 -7.28463 -6.04981 -4.01662 2.34346 3.06490 3.20498 3.31157 3.32602 3.43780 3.47055 3.55176 3.65800 4.03716 4.06193 4.32948 4.38611 4.42949 4.48829 4.62831 4.72319 4.86336 4.96383 5.01234 5.14841 5.19922 5.25675 5.31103 5.45193 5.51338 5.54282 5.65549 5.76766 5.94092 6.12217 6.28179 6.35742 6.47769 6.62847 6.71857 7.12689 7.46359 7.71336 8.26341 8.53122 9.06202 9.29377 9.57957 11.08632 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.014338 B = 0.003019 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.406869 B = 9271.252738 C =10627.247286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.067 3.933 3 Si 0.874 3.126 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.504 4.504 8 H 0.079 0.921 9 C 0.180 3.820 10 N -0.573 5.573 11 C 0.530 3.470 12 O -0.467 6.467 13 N -0.784 5.784 14 C 0.114 3.886 15 C -0.096 4.096 16 C -0.115 4.115 17 C 0.059 3.941 18 N -0.532 5.532 19 C 0.008 3.992 20 C 0.458 3.542 21 F -0.171 7.171 22 F -0.186 7.186 23 F -0.184 7.184 24 C 0.039 3.961 25 C -0.106 4.106 26 H 0.264 0.736 27 H -0.018 1.018 28 H 0.031 0.969 29 H 0.391 0.609 30 H 0.411 0.589 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.041 0.959 37 H 0.083 0.917 38 H 0.119 0.881 39 H 0.083 0.917 40 H 0.040 0.960 41 H 0.091 0.909 42 H 0.073 0.927 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.109 1.613 -19.871 28.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.134 4.134 3 Si 0.701 3.299 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.542 4.542 8 H 0.097 0.903 9 C 0.053 3.947 10 N -0.315 5.315 11 C 0.216 3.784 12 O -0.260 6.260 13 N -0.445 5.445 14 C -0.013 4.013 15 C -0.115 4.115 16 C -0.152 4.152 17 C -0.068 4.068 18 N -0.257 5.257 19 C -0.122 4.122 20 C 0.403 3.597 21 F -0.152 7.152 22 F -0.168 7.168 23 F -0.166 7.166 24 C -0.089 4.089 25 C -0.145 4.145 26 H 0.074 0.926 27 H -0.001 1.001 28 H 0.049 0.951 29 H 0.243 0.757 30 H 0.252 0.748 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.059 0.941 37 H 0.102 0.898 38 H 0.137 0.863 39 H 0.101 0.899 40 H 0.059 0.941 41 H 0.109 0.891 42 H 0.092 0.908 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 19.021 0.759 -18.863 26.799 hybrid contribution 1.388 2.361 -1.040 2.929 sum 20.409 3.120 -19.904 28.678 Atomic orbital electron populations 1.69899 1.06082 1.26757 1.51101 1.24915 0.94769 0.98683 0.95053 0.86875 0.80519 0.84131 0.78331 1.20338 1.20975 1.19135 1.21056 0.88511 0.94844 1.49794 0.90284 1.19836 0.96768 0.83728 0.94397 1.72149 1.17355 1.20330 1.21676 1.20476 0.91311 0.80711 0.85882 1.84908 1.68712 1.20885 1.51482 1.46096 1.62681 1.10880 1.24807 1.21331 0.95397 0.96865 0.87658 1.21363 0.96878 0.97380 0.95890 1.21682 0.97159 0.98031 0.98376 1.22177 0.96563 0.96663 0.91388 1.61741 1.17594 1.31700 1.14668 1.23202 1.05054 0.94304 0.89670 1.20531 0.74734 0.77234 0.87196 1.93217 1.61585 1.67863 1.92579 1.93188 1.95828 1.62994 1.64754 1.93107 1.46303 1.81917 1.95275 1.22499 0.90313 0.97203 0.98847 1.21555 0.99727 0.97733 0.95457 0.92638 1.00062 0.95098 0.75728 0.74796 0.92492 0.92032 0.90669 0.90216 0.90255 0.94059 0.89835 0.86283 0.89900 0.94144 0.89119 0.90808 0.90369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.96 13.96 55.43 0.77 -27.18 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.87 21.09 27.47 -169.99 -4.67 16.42 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 7 C -0.50 -15.08 9.94 -34.44 -0.34 -15.42 16 8 H 0.08 2.65 8.06 -52.49 -0.42 2.23 16 9 C 0.18 4.59 5.10 -5.19 -0.03 4.57 16 10 N -0.57 -13.96 10.60 -63.71 -0.68 -14.64 16 11 C 0.53 10.08 8.83 -88.57 -0.78 9.29 16 12 O -0.47 -7.53 13.61 -16.98 -0.23 -7.76 16 13 N -0.78 -11.59 5.23 -62.53 -0.33 -11.91 16 14 C 0.11 1.10 4.40 -4.04 -0.02 1.08 16 15 C -0.10 -0.82 2.29 -90.50 -0.21 -1.03 16 16 C -0.11 -1.14 5.22 -26.65 -0.14 -1.28 16 17 C 0.06 0.50 5.42 -3.83 -0.02 0.48 16 18 N -0.53 -4.21 4.39 -234.67 -1.03 -5.24 16 19 C 0.01 0.05 5.13 -3.82 -0.02 0.03 16 20 C 0.46 3.65 3.28 37.16 0.12 3.77 16 21 F -0.17 -1.70 17.12 2.25 0.04 -1.66 16 22 F -0.19 -1.54 17.32 2.25 0.04 -1.51 16 23 F -0.18 -1.56 14.74 2.25 0.03 -1.52 16 24 C 0.04 0.28 5.23 -3.83 -0.02 0.26 16 25 C -0.11 -0.74 5.38 -26.65 -0.14 -0.88 16 26 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 27 H -0.02 -0.41 4.89 -51.93 -0.25 -0.67 16 28 H 0.03 0.81 7.18 -51.93 -0.37 0.44 16 29 H 0.39 3.86 6.97 45.56 0.32 4.18 16 30 H 0.41 6.55 5.14 -40.82 -0.21 6.34 16 31 H 0.06 0.44 7.71 -51.93 -0.40 0.04 16 32 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.08 0.96 7.27 -51.93 -0.38 0.58 16 36 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 0.69 7.92 -51.93 -0.41 0.27 16 38 H 0.12 0.62 7.76 -51.93 -0.40 0.22 16 39 H 0.08 0.41 7.97 -51.93 -0.41 0.00 16 40 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.09 0.65 5.54 -51.93 -0.29 0.36 16 42 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 352.52 15.07 5.31 5.31 Total: -1.00 -35.35 352.52 -7.79 -43.14 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -5.36 Total: 3.82 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: -1.69 Total: 2.74 kcal Atomic # 7 Polarization: -57.71 SS G_CDS: -1.26 Total: -58.97 kcal Atomic # 8 Polarization: -7.53 SS G_CDS: -0.23 Total: -7.76 kcal Atomic # 9 Polarization: -4.80 SS G_CDS: 0.11 Total: -4.69 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.42 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.35 -7.79 -43.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331119557.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.011 kcal (2) G-P(sol) polarization free energy of solvation -35.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds