Wall clock time and date at job start Tue Mar 31 2020 14:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 120.00162 * 2 1 4 4 H 1.48502 * 109.47299 * 269.99691 * 3 2 1 5 5 H 1.48494 * 109.47309 * 30.00268 * 3 2 1 6 6 H 1.48501 * 109.46810 * 150.00053 * 3 2 1 7 7 C 1.37877 * 119.99366 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00522 * 359.71923 * 7 2 1 9 9 C 1.50701 * 119.99883 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.47111 * 179.72487 * 9 7 2 11 11 C 1.30099 * 120.00078 * 120.83722 * 10 9 7 12 12 O 1.35091 * 120.00265 * 186.46633 * 11 10 9 13 13 N 1.37341 * 119.99926 * 6.47294 * 11 10 9 14 14 C 1.46504 * 119.99595 * 185.51629 * 13 11 10 15 15 C 1.52998 * 109.46847 * 179.97438 * 14 13 11 16 16 C 1.53113 * 109.52747 * 294.68455 * 15 14 13 17 17 C 1.53036 * 109.28286 * 182.43754 * 16 15 14 18 18 N 1.46851 * 109.52099 * 59.17909 * 17 16 15 19 19 C 1.46893 * 111.00261 * 174.15961 * 18 17 16 20 20 C 1.53007 * 109.47419 * 201.89320 * 19 18 17 21 21 F 1.39902 * 109.46862 * 53.65437 * 20 19 18 22 22 F 1.39898 * 109.46871 * 173.65036 * 20 19 18 23 23 F 1.39898 * 109.46861 * 293.65239 * 20 19 18 24 24 C 1.46847 * 111.19866 * 298.25911 * 18 17 16 25 25 C 1.53039 * 109.52425 * 61.74071 * 24 18 17 26 26 H 0.97001 * 119.99647 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.46832 * 299.71967 * 9 7 2 28 28 H 1.09000 * 109.47491 * 59.71616 * 9 7 2 29 29 H 0.96699 * 114.00481 * 179.97438 * 12 11 10 30 30 H 0.96994 * 119.99938 * 5.51378 * 13 11 10 31 31 H 1.09004 * 109.47000 * 299.99471 * 14 13 11 32 32 H 1.09001 * 109.47501 * 59.99718 * 14 13 11 33 33 H 1.09000 * 109.52324 * 54.87516 * 15 14 13 34 34 H 1.08998 * 109.50360 * 302.38073 * 16 15 14 35 35 H 1.09003 * 109.50568 * 62.49868 * 16 15 14 36 36 H 1.08994 * 109.46167 * 299.16531 * 17 16 15 37 37 H 1.09000 * 109.45308 * 179.18331 * 17 16 15 38 38 H 1.09004 * 109.47309 * 321.89684 * 19 18 17 39 39 H 1.09003 * 109.47029 * 81.89083 * 19 18 17 40 40 H 1.08997 * 109.46238 * 301.72863 * 24 18 17 41 41 H 1.09001 * 109.46588 * 181.75731 * 24 18 17 42 42 H 1.08998 * 109.50264 * 180.88252 * 25 24 18 43 43 H 1.09001 * 109.50208 * 60.75919 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 0.0036 9 6 3.5115 -1.1943 0.0000 10 7 3.9997 -2.5755 0.0059 11 6 4.7613 -3.0004 -0.9594 12 8 5.1046 -4.3053 -1.0247 13 7 5.2166 -2.1221 -1.9121 14 6 5.9728 -2.6188 -3.0645 15 6 6.3578 -1.4444 -3.9663 16 6 5.0927 -0.8192 -4.5604 17 6 5.4870 0.3155 -5.5086 18 7 6.3419 -0.2141 -6.5788 19 6 6.6267 0.8181 -7.5844 20 6 7.0233 0.1502 -8.9027 21 9 6.0361 -0.7683 -9.2755 22 9 7.1538 1.1244 -9.8982 23 9 8.2426 -0.5161 -8.7395 24 6 7.5847 -0.7772 -6.0360 25 6 7.2529 -1.9445 -5.1035 26 1 -0.4850 0.8401 0.0004 27 1 3.8751 -0.6842 -0.8920 28 1 3.8746 -0.6767 0.8879 29 1 5.6718 -4.5258 -1.7761 30 1 5.0375 -1.1731 -1.8221 31 1 6.8753 -3.1219 -2.7173 32 1 5.3582 -3.3220 -3.6267 33 1 6.8946 -0.6971 -3.3820 34 1 4.5364 -1.5773 -5.1117 35 1 4.4710 -0.4229 -3.7576 36 1 6.0312 1.0797 -4.9538 37 1 4.5889 0.7532 -5.9444 38 1 5.7376 1.4292 -7.7398 39 1 7.4447 1.4487 -7.2361 40 1 8.1190 -0.0078 -5.4787 41 1 8.2103 -1.1329 -6.8547 42 1 8.1747 -2.3521 -4.6887 43 1 6.7307 -2.7203 -5.6634 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331119557.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:44 Heat of formation + Delta-G solvation = -191.801124 kcal Electronic energy + Delta-G solvation = -28082.674977 eV Core-core repulsion = 23554.273522 eV Total energy + Delta-G solvation = -4528.401455 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.03628 -48.61030 -48.47663 -40.78265 -39.87416 -36.93325 -36.22805 -34.62261 -33.33260 -31.87354 -30.41352 -29.51128 -26.85613 -24.72499 -24.17988 -23.98682 -22.71394 -21.33309 -20.81142 -19.66802 -19.45683 -19.40235 -19.01610 -18.36227 -17.42556 -16.79485 -16.39277 -16.17793 -16.08635 -15.60310 -15.41432 -15.31245 -15.25701 -15.07403 -14.91895 -14.79695 -14.69733 -14.63167 -14.55447 -14.25880 -13.99246 -13.96343 -13.48774 -13.25833 -12.97892 -12.91406 -12.68568 -12.51388 -12.16632 -12.15963 -11.72114 -11.69981 -11.43571 -11.33498 -10.93082 -10.77422 -9.90837 -9.55127 -8.84099 -8.29550 -6.35115 1.31653 1.38656 1.49808 1.76348 1.93250 2.21815 2.34581 2.49817 2.84711 2.92032 3.03167 3.09995 3.46972 3.62880 3.76809 3.84042 4.07811 4.22651 4.28712 4.30280 4.41169 4.50211 4.55791 4.65812 4.70712 4.78994 4.81157 4.85536 4.90394 5.00262 5.14748 5.15769 5.24485 5.43037 5.52130 5.62144 5.78181 5.91320 6.06305 6.37047 6.69006 6.96405 7.25256 7.79215 8.88271 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.014338 B = 0.003019 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.406869 B = 9271.252738 C =10627.247286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.005 3.995 3 Si 0.958 3.042 4 H -0.250 1.250 5 H -0.281 1.281 6 H -0.249 1.249 7 C -0.526 4.526 8 H 0.017 0.983 9 C 0.198 3.802 10 N -0.652 5.652 11 C 0.556 3.444 12 O -0.469 6.469 13 N -0.774 5.774 14 C 0.107 3.893 15 C -0.088 4.088 16 C -0.116 4.116 17 C 0.063 3.937 18 N -0.545 5.545 19 C 0.011 3.989 20 C 0.457 3.543 21 F -0.186 7.186 22 F -0.189 7.189 23 F -0.188 7.188 24 C 0.038 3.962 25 C -0.100 4.100 26 H 0.269 0.731 27 H 0.006 0.994 28 H 0.022 0.978 29 H 0.418 0.582 30 H 0.407 0.593 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.050 0.950 37 H 0.082 0.918 38 H 0.130 0.870 39 H 0.103 0.897 40 H 0.050 0.950 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.350 2.986 -21.260 31.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.192 4.192 3 Si 0.779 3.221 4 H -0.175 1.175 5 H -0.206 1.206 6 H -0.172 1.172 7 C -0.564 4.564 8 H 0.035 0.965 9 C 0.070 3.930 10 N -0.398 5.398 11 C 0.243 3.757 12 O -0.266 6.266 13 N -0.433 5.433 14 C -0.017 4.017 15 C -0.107 4.107 16 C -0.154 4.154 17 C -0.064 4.064 18 N -0.270 5.270 19 C -0.119 4.119 20 C 0.402 3.598 21 F -0.167 7.167 22 F -0.170 7.170 23 F -0.169 7.169 24 C -0.090 4.090 25 C -0.138 4.138 26 H 0.078 0.922 27 H 0.024 0.976 28 H 0.039 0.961 29 H 0.275 0.725 30 H 0.247 0.753 31 H 0.108 0.892 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.100 0.900 38 H 0.148 0.852 39 H 0.121 0.879 40 H 0.068 0.932 41 H 0.109 0.891 42 H 0.112 0.888 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 22.328 2.080 -20.329 30.268 hybrid contribution 0.408 1.732 -0.748 1.931 sum 22.736 3.813 -21.077 31.237 Atomic orbital electron populations 1.70084 1.08456 1.28401 1.52123 1.26023 0.95776 1.03614 0.93812 0.85566 0.79243 0.77272 0.79972 1.17451 1.20600 1.17223 1.21298 0.91392 0.92906 1.50813 0.96462 1.19426 0.93425 0.85359 0.94807 1.71998 1.22195 1.19908 1.25677 1.20374 0.88808 0.81624 0.84927 1.84887 1.69175 1.19296 1.53214 1.46147 1.61935 1.10094 1.25119 1.21694 0.96104 0.97716 0.86171 1.21308 0.96391 0.96865 0.96107 1.21642 0.97525 0.98340 0.97930 1.22080 0.96859 0.96092 0.91329 1.61664 1.18142 1.32480 1.14743 1.23262 1.06379 0.93959 0.88283 1.20797 0.74308 0.76928 0.87768 1.93188 1.62220 1.68515 1.92806 1.93181 1.95816 1.62986 1.65060 1.93099 1.46473 1.82051 1.95290 1.22536 0.90019 0.97440 0.98957 1.21521 1.00071 0.97555 0.94671 0.92220 0.97609 0.96071 0.72509 0.75321 0.89153 0.91378 0.90155 0.91544 0.92666 0.93171 0.89968 0.85155 0.87907 0.93202 0.89080 0.88761 0.90925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.17 13.96 21.45 0.30 -60.87 16 2 C 0.00 0.28 5.47 84.65 0.46 0.74 16 3 Si 0.96 43.36 27.47 68.60 1.88 45.24 16 4 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.25 -10.48 6.54 99.48 0.65 -9.83 16 7 C -0.53 -32.91 9.94 25.60 0.25 -32.66 16 8 H 0.02 1.23 8.06 -2.91 -0.02 1.21 16 9 C 0.20 10.21 5.10 85.63 0.44 10.65 16 10 N -0.65 -32.24 10.60 -469.72 -4.98 -37.22 16 11 C 0.56 20.55 8.83 179.63 1.59 22.14 16 12 O -0.47 -14.22 13.61 -83.66 -1.14 -15.36 16 13 N -0.77 -21.24 5.23 -462.20 -2.42 -23.66 16 14 C 0.11 1.72 4.40 86.38 0.38 2.10 16 15 C -0.09 -1.22 2.29 -10.72 -0.02 -1.25 16 16 C -0.12 -2.12 5.22 30.64 0.16 -1.96 16 17 C 0.06 0.92 5.42 86.32 0.47 1.39 16 18 N -0.55 -7.27 4.39 -896.36 -3.93 -11.20 16 19 C 0.01 0.11 5.13 86.31 0.44 0.55 16 20 C 0.46 6.47 3.28 71.98 0.24 6.70 16 21 F -0.19 -3.48 17.12 44.97 0.77 -2.71 16 22 F -0.19 -2.84 17.32 44.97 0.78 -2.06 16 23 F -0.19 -2.81 14.74 44.97 0.66 -2.14 16 24 C 0.04 0.42 5.23 86.33 0.45 0.87 16 25 C -0.10 -1.04 5.38 30.65 0.16 -0.88 16 26 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 27 H 0.01 0.29 4.89 -2.39 -0.01 0.28 16 28 H 0.02 1.11 7.18 -2.39 -0.02 1.10 16 29 H 0.42 6.84 6.97 -74.06 -0.52 6.32 16 30 H 0.41 12.14 5.14 -92.71 -0.48 11.66 16 31 H 0.09 0.94 7.71 -2.38 -0.02 0.92 16 32 H 0.07 1.07 8.08 -2.39 -0.02 1.05 16 33 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.05 1.27 7.27 -2.39 -0.02 1.25 16 36 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.08 1.20 7.92 -2.39 -0.02 1.19 16 38 H 0.13 1.03 7.76 -2.39 -0.02 1.02 16 39 H 0.10 0.67 7.97 -2.39 -0.02 0.65 16 40 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.09 1.04 5.54 -2.39 -0.01 1.03 16 42 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -81.86 352.52 -3.05 -84.90 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 0.01 Total: 16.69 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: 5.02 Total: 8.39 kcal Atomic # 7 Polarization: -121.92 SS G_CDS: -11.03 Total: -132.95 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -1.14 Total: -15.36 kcal Atomic # 9 Polarization: -9.13 SS G_CDS: 2.21 Total: -6.91 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.88 Total: 45.24 kcal Total: -81.86 -3.05 -84.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331119557.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.900 kcal (2) G-P(sol) polarization free energy of solvation -81.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds