Wall clock time and date at job start Tue Mar 31 2020 13:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36000 * 116.99847 * 2 1 4 4 C 1.38667 * 120.04644 * 359.97438 * 3 2 1 5 5 C 1.38229 * 120.08806 * 180.02562 * 4 3 2 6 6 C 1.50698 * 119.91002 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.47390 * 89.99965 * 6 5 4 8 8 C 1.50697 * 109.47338 * 180.02562 * 7 6 5 9 9 O 1.21290 * 120.00294 * 359.97438 * 8 7 6 10 10 N 1.34783 * 119.99917 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00049 * 359.97438 * 10 8 7 12 12 C 1.37093 * 119.99707 * 179.97438 * 10 8 7 13 13 H 1.08006 * 120.00219 * 24.39938 * 12 10 8 14 14 C 1.38953 * 119.99801 * 204.39160 * 12 10 8 15 15 N 1.31404 * 119.99958 * 12.64304 * 14 12 10 16 16 Si 1.86806 * 120.00036 * 192.64416 * 14 12 10 17 17 H 1.48506 * 109.46909 * 59.99816 * 16 14 12 18 18 H 1.48493 * 109.47106 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47133 * 300.00257 * 16 14 12 20 20 C 1.38230 * 120.18057 * 0.25305 * 5 4 3 21 21 C 1.38663 * 120.08793 * 359.45234 * 20 5 4 22 22 O 1.35997 * 120.04637 * 180.29272 * 21 20 5 23 23 C 1.42905 * 116.99874 * 0.27788 * 22 21 20 24 24 C 1.38978 * 119.91136 * 0.57022 * 21 20 5 25 25 O 1.36093 * 120.09488 * 179.68556 * 24 21 20 26 26 C 1.42906 * 116.99548 * 270.02113 * 25 24 21 27 27 H 1.08996 * 109.47394 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47218 * 299.99859 * 1 2 3 29 29 H 1.09002 * 109.47435 * 59.99736 * 1 2 3 30 30 H 1.07993 * 119.95373 * 0.02562 * 4 3 2 31 31 H 1.09002 * 109.47230 * 329.99945 * 6 5 4 32 32 H 1.08994 * 109.47286 * 210.00186 * 6 5 4 33 33 H 1.09006 * 109.47312 * 300.00052 * 7 6 5 34 34 H 1.09002 * 109.46950 * 59.99809 * 7 6 5 35 35 H 1.08996 * 109.47006 * 85.86222 * 11 10 8 36 36 H 1.08995 * 109.46997 * 205.86282 * 11 10 8 37 37 H 1.09002 * 109.46921 * 325.86313 * 11 10 8 38 38 H 0.97003 * 120.00118 * 179.97438 * 15 14 12 39 39 H 1.07996 * 119.95391 * 179.72758 * 20 5 4 40 40 H 1.09000 * 109.46844 * 180.02562 * 23 22 21 41 41 H 1.08999 * 109.46608 * 299.99599 * 23 22 21 42 42 H 1.08997 * 109.47007 * 59.99648 * 23 22 21 43 43 H 1.08998 * 109.47261 * 59.99677 * 26 25 24 44 44 H 1.09006 * 109.46707 * 179.97438 * 26 25 24 45 45 H 1.08994 * 109.47008 * 299.99637 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2921 2.3753 -0.0005 5 6 1.9187 3.6074 -0.0011 6 6 1.0950 4.8694 -0.0022 7 6 0.8156 5.2975 1.4398 8 6 -0.0086 6.5590 1.4387 9 8 -0.3397 7.0663 0.3878 10 7 -0.3771 7.1244 2.6054 11 6 0.0231 6.5121 3.8747 12 6 -1.1265 8.2723 2.6043 13 1 -1.7452 8.5126 1.7522 14 6 -1.0903 9.1267 3.6995 15 7 -0.1656 8.9751 4.6207 16 14 -2.3561 10.4908 3.8623 17 1 -3.7173 9.8994 3.9135 18 1 -2.1012 11.2564 5.1089 19 1 -2.2557 11.4014 2.6935 20 6 3.2988 3.6852 -0.0064 21 6 4.0603 2.5264 0.0003 22 8 5.4181 2.6039 0.0011 23 6 5.9932 3.9121 0.0011 24 6 3.4343 1.2856 0.0004 25 8 4.1781 0.1460 0.0005 26 6 4.5331 -0.3971 -1.2729 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 0.2136 2.3188 -0.0005 31 1 0.1513 4.6869 -0.5164 32 1 1.6418 5.6597 -0.5163 33 1 0.2686 4.5071 1.9540 34 1 1.7592 5.4800 1.9540 35 1 1.0157 6.8667 4.1520 36 1 -0.6908 6.7862 4.6513 37 1 0.0421 5.4278 3.7649 38 1 -0.1400 9.5717 5.3851 39 1 3.7845 4.6497 -0.0112 40 1 7.0802 3.8311 0.0013 41 1 5.6696 4.4511 -0.8894 42 1 5.6685 4.4518 0.8906 43 1 5.1184 0.3347 -1.8296 44 1 5.1240 -1.3018 -1.1300 45 1 3.6279 -0.6381 -1.8301 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337538131.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:40 Heat of formation + Delta-G solvation = -114.732549 kcal Electronic energy + Delta-G solvation = -27528.404884 eV Core-core repulsion = 23512.909362 eV Total energy + Delta-G solvation = -4015.495521 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.88032 -39.09104 -38.57819 -37.79313 -36.86561 -34.72817 -32.84435 -31.58703 -29.71526 -29.53616 -27.95256 -27.22149 -26.84289 -26.07767 -24.75024 -23.32898 -22.06560 -21.25787 -18.75142 -18.41827 -17.32131 -17.28962 -16.85658 -16.61951 -16.31300 -15.94986 -15.62944 -15.08573 -14.90145 -14.80583 -14.63689 -14.53911 -14.10702 -14.03844 -13.37665 -12.94273 -12.78462 -12.61595 -12.25775 -12.16955 -11.94032 -11.70618 -11.67645 -11.64190 -11.47291 -11.35824 -11.25600 -10.86458 -10.85656 -10.60443 -10.46541 -10.39996 -10.20563 -10.00376 -9.00619 -8.44614 -8.23741 -8.16191 -7.66000 -6.32527 -3.88956 1.12196 1.31070 2.71450 3.18126 3.23719 3.27435 3.37297 3.52295 3.87075 3.90580 4.14024 4.61496 4.83008 4.93529 4.96818 5.02942 5.05784 5.07394 5.09356 5.10409 5.13540 5.29326 5.31638 5.36129 5.39270 5.39462 5.57882 5.58865 5.61973 5.79037 6.05831 6.10218 6.11986 6.22388 6.30397 6.41698 6.54541 6.66404 6.85303 6.95235 7.14977 7.19325 7.56018 7.64285 8.14367 8.48726 9.18781 9.43010 9.99193 10.72436 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.018852 B = 0.002751 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.910427 B =10175.743086 C =10977.007147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.306 6.306 3 C 0.150 3.850 4 C -0.230 4.230 5 C 0.006 3.994 6 C -0.065 4.065 7 C -0.122 4.122 8 C 0.446 3.554 9 O -0.592 6.592 10 N -0.447 5.447 11 C 0.112 3.888 12 C -0.308 4.308 13 H 0.097 0.903 14 C 0.030 3.970 15 N -0.883 5.883 16 Si 0.926 3.074 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.273 1.273 20 C -0.230 4.230 21 C 0.151 3.849 22 O -0.306 6.306 23 C 0.024 3.976 24 C 0.015 3.985 25 O -0.313 6.313 26 C 0.035 3.965 27 H 0.100 0.900 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.136 0.864 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.051 0.949 36 H 0.073 0.927 37 H 0.026 0.974 38 H 0.268 0.732 39 H 0.136 0.864 40 H 0.100 0.900 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.042 0.958 44 H 0.089 0.911 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.037 -16.498 -7.497 19.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.218 6.218 3 C 0.104 3.896 4 C -0.249 4.249 5 C 0.005 3.995 6 C -0.102 4.102 7 C -0.162 4.162 8 C 0.234 3.766 9 O -0.478 6.478 10 N -0.166 5.166 11 C -0.032 4.032 12 C -0.436 4.436 13 H 0.114 0.886 14 C -0.173 4.173 15 N -0.522 5.522 16 Si 0.753 3.247 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.198 1.198 20 C -0.249 4.249 21 C 0.104 3.896 22 O -0.218 6.218 23 C -0.071 4.071 24 C -0.030 4.030 25 O -0.229 6.229 26 C -0.059 4.059 27 H 0.118 0.882 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.154 0.846 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.044 0.956 38 H 0.078 0.922 39 H 0.154 0.846 40 H 0.119 0.881 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.061 0.939 44 H 0.107 0.893 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 8.215 -16.593 -7.638 20.028 hybrid contribution -0.783 1.198 0.202 1.445 sum 7.432 -15.395 -7.436 18.642 Atomic orbital electron populations 1.23130 0.78109 1.03956 1.01876 1.86120 1.21437 1.26036 1.88255 1.18934 0.90529 0.84898 0.95280 1.21009 1.00349 0.90980 1.12593 1.19704 0.92939 0.94914 0.91904 1.20381 0.99598 0.92916 0.97329 1.21488 1.00785 0.97443 0.96501 1.20067 0.84478 0.87572 0.84461 1.90506 1.59777 1.66402 1.31076 1.43584 1.45989 1.22978 1.04039 1.21472 1.01550 0.92696 0.87491 1.19593 1.21439 0.98153 1.04386 0.88561 1.25344 0.97197 0.98255 0.96485 1.69982 1.31338 1.38868 1.12026 0.86007 0.80588 0.80497 0.77647 1.19935 1.20958 1.19801 1.21031 0.94118 0.97294 1.12414 1.18936 0.82865 0.92593 0.95181 1.86118 1.16714 1.30797 1.88218 1.23142 0.99064 0.82956 1.01945 1.16888 0.86340 0.84606 1.15179 1.86166 1.70130 1.38048 1.28549 1.22948 0.99357 0.98328 0.85297 0.88172 0.92172 0.92430 0.84649 0.90082 0.90009 0.90465 0.90220 0.93044 0.90780 0.95565 0.92215 0.84586 0.88147 0.92409 0.92095 0.93921 0.89301 0.93925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.87 10.28 -34.33 -0.35 -4.22 16 3 C 0.15 2.07 6.70 -39.15 -0.26 1.81 16 4 C -0.23 -3.05 8.69 -39.43 -0.34 -3.39 16 5 C 0.01 0.08 5.13 -104.63 -0.54 -0.46 16 6 C -0.06 -1.02 4.63 -27.88 -0.13 -1.15 16 7 C -0.12 -2.17 4.29 -27.88 -0.12 -2.29 16 8 C 0.45 10.66 7.63 -10.98 -0.08 10.58 16 9 O -0.59 -16.06 15.70 5.55 0.09 -15.97 16 10 N -0.45 -11.43 3.01 -122.20 -0.37 -11.80 16 11 C 0.11 2.49 8.44 59.85 0.51 2.99 16 12 C -0.31 -8.59 9.24 -14.93 -0.14 -8.72 16 13 H 0.10 2.80 7.45 -52.48 -0.39 2.41 16 14 C 0.03 0.80 5.04 -17.47 -0.09 0.71 16 15 N -0.88 -23.58 10.83 55.50 0.60 -22.97 16 16 Si 0.93 20.72 29.57 -169.99 -5.03 15.69 16 17 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 18 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 20 C -0.23 -3.09 8.68 -39.43 -0.34 -3.43 16 21 C 0.15 2.10 6.70 -39.15 -0.26 1.84 16 22 O -0.31 -3.94 10.28 -34.31 -0.35 -4.29 16 23 C 0.02 0.22 9.81 101.05 0.99 1.21 16 24 C 0.02 0.22 5.75 -39.03 -0.22 0.00 16 25 O -0.31 -4.57 9.99 -45.29 -0.45 -5.02 16 26 C 0.04 0.38 11.13 101.05 1.13 1.51 16 27 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 29 H 0.06 0.44 7.66 -51.93 -0.40 0.05 16 30 H 0.14 1.57 6.29 -52.49 -0.33 1.23 16 31 H 0.08 1.30 8.04 -51.93 -0.42 0.89 16 32 H 0.08 1.35 8.04 -51.93 -0.42 0.93 16 33 H 0.08 1.26 7.41 -51.93 -0.38 0.87 16 34 H 0.08 1.36 8.11 -51.93 -0.42 0.93 16 35 H 0.05 1.17 7.83 -51.93 -0.41 0.77 16 36 H 0.07 1.74 6.80 -51.93 -0.35 1.39 16 37 H 0.03 0.48 6.61 -51.93 -0.34 0.14 16 38 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 39 H 0.14 1.63 6.29 -52.49 -0.33 1.30 16 40 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.47 7.65 -51.93 -0.40 0.07 16 42 H 0.06 0.54 7.67 -51.93 -0.40 0.14 16 43 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 375.18 15.07 5.65 5.65 Total: -1.00 -33.48 375.18 -5.76 -39.25 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -6.63 Total: 1.29 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: 1.08 Total: 2.40 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: 0.23 Total: -34.78 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -1.07 Total: -29.51 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.69 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.48 -5.76 -39.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337538131.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.487 kcal (2) G-P(sol) polarization free energy of solvation -33.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds