Wall clock time and date at job start Tue Mar 31 2020 14:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 113.99598 * 2 1 4 4 H 1.08996 * 109.47534 * 29.99727 * 3 2 1 5 5 C 1.52999 * 109.46945 * 269.99506 * 3 2 1 6 6 C 1.53011 * 109.47000 * 180.02562 * 5 3 2 7 7 C 1.52994 * 109.46820 * 60.00518 * 6 5 3 8 8 C 1.53001 * 109.47252 * 299.99392 * 7 6 5 9 9 H 1.08997 * 109.47307 * 180.02562 * 8 7 6 10 10 C 1.50702 * 109.47256 * 300.00908 * 8 7 6 11 11 O 1.21283 * 120.00160 * 108.94858 * 10 8 7 12 12 N 1.34768 * 119.99580 * 288.94060 * 10 8 7 13 13 C 1.46503 * 120.00130 * 3.77081 * 12 10 8 14 14 C 1.50703 * 109.47027 * 95.37713 * 13 12 10 15 15 H 1.07999 * 120.00110 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99763 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99909 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 120.00070 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.46728 * 90.00580 * 18 16 14 20 20 H 1.48495 * 109.47038 * 210.00213 * 18 16 14 21 21 H 1.48498 * 109.47167 * 330.00581 * 18 16 14 22 22 C 1.46498 * 120.00132 * 183.76658 * 12 10 8 23 23 C 1.53003 * 109.47124 * 92.39128 * 22 12 10 24 24 F 1.39908 * 109.46853 * 65.69165 * 23 22 12 25 25 F 1.39901 * 109.46982 * 185.68768 * 23 22 12 26 26 F 1.39891 * 109.47323 * 305.69271 * 23 22 12 27 27 C 1.53003 * 109.46751 * 150.00154 * 3 2 1 28 28 H 1.08996 * 109.47448 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47574 * 300.00606 * 1 2 3 30 30 H 1.09009 * 109.47527 * 60.00048 * 1 2 3 31 31 H 1.08995 * 109.47690 * 300.00302 * 5 3 2 32 32 H 1.08997 * 109.46966 * 60.00673 * 5 3 2 33 33 H 1.09001 * 109.47044 * 180.02562 * 6 5 3 34 34 H 1.08995 * 109.46908 * 300.00491 * 6 5 3 35 35 H 1.08996 * 109.47546 * 59.99744 * 7 6 5 36 36 H 1.09006 * 109.46831 * 180.02562 * 7 6 5 37 37 H 1.09004 * 109.46936 * 215.37132 * 13 12 10 38 38 H 1.08994 * 109.47415 * 335.37223 * 13 12 10 39 39 H 0.97003 * 120.00060 * 179.97438 * 17 16 14 40 40 H 1.09005 * 109.47470 * 212.39514 * 22 12 10 41 41 H 1.08998 * 109.47160 * 332.39306 * 22 12 10 42 42 H 1.09001 * 109.47106 * 299.99600 * 27 3 2 43 43 H 1.08995 * 109.47305 * 60.00053 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3448 1.9994 0.5138 5 6 2.2176 1.7714 -1.4425 6 6 2.8404 3.1690 -1.4425 7 6 4.1891 3.1262 -0.7215 8 6 3.9817 2.6604 0.7211 9 1 4.9425 2.6303 1.2349 10 6 3.0623 3.6200 1.4316 11 8 1.9330 3.2806 1.7150 12 7 3.4951 4.8554 1.7521 13 6 4.8298 5.2946 1.3373 14 6 4.7265 6.0654 0.0465 15 1 3.7630 6.2131 -0.4186 16 6 5.8621 6.5813 -0.5411 17 7 5.7719 7.2544 -1.6673 18 14 7.5286 6.3252 0.2630 19 1 8.1361 5.0695 -0.2462 20 1 8.4158 7.4711 -0.0609 21 1 7.3586 6.2314 1.7353 22 6 2.6309 5.7593 2.5152 23 6 2.9233 5.6044 4.0090 24 9 4.2242 6.0437 4.2775 25 9 2.0116 6.3694 4.7444 26 9 2.8015 4.2586 4.3709 27 6 3.3588 1.2633 0.7212 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 2.8828 1.0775 -1.9563 32 1 1.2568 1.8014 -1.9563 33 1 2.9878 3.5010 -2.4702 34 1 2.1755 3.8630 -0.9286 35 1 4.8541 2.4320 -1.2354 36 1 4.6326 4.1219 -0.7211 37 1 5.2580 5.9342 2.1092 38 1 5.4694 4.4243 1.1906 39 1 6.5707 7.6177 -2.0806 40 1 2.8236 6.7885 2.2120 41 1 1.5868 5.5131 2.3219 42 1 3.2110 0.9314 1.7489 43 1 4.0241 0.5695 0.2074 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341334023.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:23 Heat of formation + Delta-G solvation = -244.033693 kcal Electronic energy + Delta-G solvation = -30398.518519 eV Core-core repulsion = 25835.559339 eV Total energy + Delta-G solvation = -4562.959180 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.78336 -47.33324 -47.24056 -40.41086 -38.05349 -35.79215 -35.54659 -32.79737 -31.04563 -30.07166 -29.04991 -27.65477 -26.19500 -23.90981 -22.87160 -22.17149 -21.86981 -20.38513 -18.62069 -18.24297 -18.00662 -17.45097 -16.80577 -16.59452 -16.00204 -15.52291 -15.33278 -14.79959 -14.51144 -14.30281 -14.19385 -14.09656 -13.88560 -13.72526 -13.44871 -13.43031 -13.31914 -13.05285 -12.67179 -12.66008 -12.26015 -12.17763 -11.96138 -11.83684 -11.67924 -11.62627 -11.31049 -11.13343 -10.80983 -10.57648 -10.44874 -10.41266 -10.09491 -9.92362 -9.75197 -9.17363 -8.89302 -8.81710 -8.18746 -6.36609 -4.38119 2.80142 3.09018 3.15033 3.20085 3.22494 3.39585 4.00898 4.14910 4.16931 4.34743 4.57816 4.92307 4.94595 5.08387 5.17357 5.38171 5.45562 5.48361 5.56483 5.63774 5.65558 5.68393 5.74125 5.77657 5.90682 5.94636 6.03835 6.15013 6.30279 6.30670 6.47571 6.48864 6.52670 6.66638 6.79396 6.92402 7.13529 7.28711 7.52600 7.77240 8.19549 8.56224 8.68638 9.20568 10.74437 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.010025 B = 0.006554 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2792.338403 B = 4270.973430 C = 6313.001744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.393 6.393 3 C 0.069 3.931 4 H 0.104 0.896 5 C -0.138 4.138 6 C -0.108 4.108 7 C -0.141 4.141 8 C -0.097 4.097 9 H 0.096 0.904 10 C 0.532 3.468 11 O -0.550 6.550 12 N -0.589 5.589 13 C 0.199 3.801 14 C -0.543 4.543 15 H 0.084 0.916 16 C 0.083 3.917 17 N -0.881 5.881 18 Si 0.863 3.137 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.261 1.261 22 C 0.080 3.920 23 C 0.431 3.569 24 F -0.183 7.183 25 F -0.188 7.188 26 F -0.181 7.181 27 C -0.092 4.092 28 H 0.077 0.923 29 H 0.040 0.960 30 H 0.036 0.964 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.132 0.868 37 H 0.040 0.960 38 H 0.041 0.959 39 H 0.269 0.731 40 H 0.127 0.873 41 H 0.120 0.880 42 H 0.066 0.934 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.846 -6.954 4.962 9.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.313 6.313 3 C 0.013 3.987 4 H 0.122 0.878 5 C -0.176 4.176 6 C -0.146 4.146 7 C -0.178 4.178 8 C -0.118 4.118 9 H 0.114 0.886 10 C 0.322 3.678 11 O -0.430 6.430 12 N -0.319 5.319 13 C 0.079 3.921 14 C -0.581 4.581 15 H 0.102 0.898 16 C -0.123 4.123 17 N -0.517 5.517 18 Si 0.689 3.311 19 H -0.195 1.195 20 H -0.207 1.207 21 H -0.186 1.186 22 C -0.047 4.047 23 C 0.375 3.625 24 F -0.164 7.164 25 F -0.170 7.170 26 F -0.163 7.163 27 C -0.130 4.130 28 H 0.095 0.905 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.150 0.850 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.079 0.921 40 H 0.145 0.855 41 H 0.138 0.862 42 H 0.085 0.915 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.178 -7.193 4.977 10.165 hybrid contribution 0.912 0.241 0.520 1.077 sum -4.266 -6.952 5.497 9.836 Atomic orbital electron populations 1.22673 0.81914 1.01677 0.99881 1.87798 1.19044 1.29288 1.95132 1.22736 0.96087 0.84512 0.95415 0.87814 1.22064 1.00536 0.97774 0.97244 1.21371 0.96861 0.95399 1.00957 1.22125 0.97884 1.06706 0.91087 1.21250 0.98607 0.93308 0.98612 0.88579 1.20694 0.87778 0.81947 0.77338 1.90484 1.20397 1.76724 1.55377 1.47830 1.18333 1.12919 1.52808 1.20138 0.78434 0.96485 0.97092 1.21204 0.96416 1.34812 1.05631 0.89787 1.24827 0.98830 0.94122 0.94492 1.69869 1.29882 1.34540 1.17428 0.87036 0.84508 0.78768 0.80793 1.19533 1.20708 1.18582 1.22423 0.99316 0.99261 0.83729 1.21575 0.74163 0.73725 0.93006 1.93182 1.38567 1.89389 1.95271 1.93149 1.67473 1.76101 1.80253 1.93182 1.95599 1.34093 1.93386 1.21350 0.95683 0.95137 1.00878 0.90453 0.94110 0.94558 0.91946 0.92770 0.91606 0.92151 0.91934 0.84997 0.94181 0.94159 0.92096 0.85510 0.86187 0.91520 0.91057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.82 101.05 1.09 1.54 16 2 O -0.39 -6.24 10.35 -35.23 -0.36 -6.60 16 3 C 0.07 1.12 2.32 -26.73 -0.06 1.06 16 4 H 0.10 1.87 4.78 -51.93 -0.25 1.62 16 5 C -0.14 -2.13 5.54 -26.73 -0.15 -2.27 16 6 C -0.11 -1.82 5.70 -26.73 -0.15 -1.97 16 7 C -0.14 -2.42 5.18 -26.73 -0.14 -2.56 16 8 C -0.10 -1.61 2.17 -91.79 -0.20 -1.81 16 9 H 0.10 1.50 6.96 -51.93 -0.36 1.13 16 10 C 0.53 9.73 5.07 -10.99 -0.06 9.67 16 11 O -0.55 -10.66 12.73 5.55 0.07 -10.59 16 12 N -0.59 -10.79 2.36 -175.06 -0.41 -11.20 16 13 C 0.20 3.96 3.64 -5.19 -0.02 3.94 16 14 C -0.54 -12.56 7.26 -34.44 -0.25 -12.81 16 15 H 0.08 2.17 8.06 -52.49 -0.42 1.74 16 16 C 0.08 2.02 5.47 -17.82 -0.10 1.93 16 17 N -0.88 -23.48 13.96 55.43 0.77 -22.71 16 18 Si 0.86 18.39 27.47 -169.99 -4.67 13.72 16 19 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.26 -5.37 6.54 56.52 0.37 -5.00 16 22 C 0.08 1.29 5.51 -4.04 -0.02 1.26 16 23 C 0.43 6.91 3.30 37.16 0.12 7.04 16 24 F -0.18 -3.08 16.15 2.25 0.04 -3.05 16 25 F -0.19 -2.82 17.32 2.25 0.04 -2.78 16 26 F -0.18 -3.15 16.56 2.25 0.04 -3.11 16 27 C -0.09 -1.45 4.83 -26.75 -0.13 -1.58 16 28 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.04 0.52 8.09 -51.93 -0.42 0.10 16 30 H 0.04 0.43 7.87 -51.92 -0.41 0.02 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.05 0.79 7.87 -51.93 -0.41 0.38 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.06 1.11 7.22 -51.93 -0.37 0.74 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.13 2.65 3.88 -51.93 -0.20 2.44 16 37 H 0.04 0.81 6.10 -51.93 -0.32 0.50 16 38 H 0.04 0.78 5.02 -51.93 -0.26 0.52 16 39 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 40 H 0.13 1.93 8.09 -51.93 -0.42 1.51 16 41 H 0.12 1.85 7.30 -51.93 -0.38 1.47 16 42 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 342.83 15.07 5.17 5.17 Total: -1.00 -26.39 342.83 -5.31 -31.70 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -5.93 Total: 6.02 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: -0.06 Total: 3.43 kcal Atomic # 7 Polarization: -34.27 SS G_CDS: 0.36 Total: -33.91 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -0.29 Total: -17.19 kcal Atomic # 9 Polarization: -9.05 SS G_CDS: 0.11 Total: -8.94 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -4.67 Total: 13.72 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -26.39 -5.31 -31.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341334023.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -212.333 kcal (2) G-P(sol) polarization free energy of solvation -26.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds