Wall clock time and date at job start Tue Mar 31 2020 14:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 113.99598 * 2 1 4 4 H 1.08996 * 109.47534 * 29.99727 * 3 2 1 5 5 C 1.52999 * 109.46945 * 269.99506 * 3 2 1 6 6 C 1.53011 * 109.47000 * 180.02562 * 5 3 2 7 7 C 1.52994 * 109.46820 * 60.00518 * 6 5 3 8 8 C 1.53001 * 109.47252 * 299.99392 * 7 6 5 9 9 H 1.08997 * 109.47307 * 180.02562 * 8 7 6 10 10 C 1.50702 * 109.47256 * 300.00908 * 8 7 6 11 11 O 1.21283 * 120.00160 * 108.94858 * 10 8 7 12 12 N 1.34768 * 119.99580 * 288.94060 * 10 8 7 13 13 C 1.46503 * 120.00130 * 3.77081 * 12 10 8 14 14 C 1.50703 * 109.47027 * 95.37713 * 13 12 10 15 15 H 1.07999 * 120.00110 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99763 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99909 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 120.00070 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.46728 * 90.00580 * 18 16 14 20 20 H 1.48495 * 109.47038 * 210.00213 * 18 16 14 21 21 H 1.48498 * 109.47167 * 330.00581 * 18 16 14 22 22 C 1.46498 * 120.00132 * 183.76658 * 12 10 8 23 23 C 1.53003 * 109.47124 * 92.39128 * 22 12 10 24 24 F 1.39908 * 109.46853 * 65.69165 * 23 22 12 25 25 F 1.39901 * 109.46982 * 185.68768 * 23 22 12 26 26 F 1.39891 * 109.47323 * 305.69271 * 23 22 12 27 27 C 1.53003 * 109.46751 * 150.00154 * 3 2 1 28 28 H 1.08996 * 109.47448 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47574 * 300.00606 * 1 2 3 30 30 H 1.09009 * 109.47527 * 60.00048 * 1 2 3 31 31 H 1.08995 * 109.47690 * 300.00302 * 5 3 2 32 32 H 1.08997 * 109.46966 * 60.00673 * 5 3 2 33 33 H 1.09001 * 109.47044 * 180.02562 * 6 5 3 34 34 H 1.08995 * 109.46908 * 300.00491 * 6 5 3 35 35 H 1.08996 * 109.47546 * 59.99744 * 7 6 5 36 36 H 1.09006 * 109.46831 * 180.02562 * 7 6 5 37 37 H 1.09004 * 109.46936 * 215.37132 * 13 12 10 38 38 H 1.08994 * 109.47415 * 335.37223 * 13 12 10 39 39 H 0.97003 * 120.00060 * 179.97438 * 17 16 14 40 40 H 1.09005 * 109.47470 * 212.39514 * 22 12 10 41 41 H 1.08998 * 109.47160 * 332.39306 * 22 12 10 42 42 H 1.09001 * 109.47106 * 299.99600 * 27 3 2 43 43 H 1.08995 * 109.47305 * 60.00053 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3448 1.9994 0.5138 5 6 2.2176 1.7714 -1.4425 6 6 2.8404 3.1690 -1.4425 7 6 4.1891 3.1262 -0.7215 8 6 3.9817 2.6604 0.7211 9 1 4.9425 2.6303 1.2349 10 6 3.0623 3.6200 1.4316 11 8 1.9330 3.2806 1.7150 12 7 3.4951 4.8554 1.7521 13 6 4.8298 5.2946 1.3373 14 6 4.7265 6.0654 0.0465 15 1 3.7630 6.2131 -0.4186 16 6 5.8621 6.5813 -0.5411 17 7 5.7719 7.2544 -1.6673 18 14 7.5286 6.3252 0.2630 19 1 8.1361 5.0695 -0.2462 20 1 8.4158 7.4711 -0.0609 21 1 7.3586 6.2314 1.7353 22 6 2.6309 5.7593 2.5152 23 6 2.9233 5.6044 4.0090 24 9 4.2242 6.0437 4.2775 25 9 2.0116 6.3694 4.7444 26 9 2.8015 4.2586 4.3709 27 6 3.3588 1.2633 0.7212 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 2.8828 1.0775 -1.9563 32 1 1.2568 1.8014 -1.9563 33 1 2.9878 3.5010 -2.4702 34 1 2.1755 3.8630 -0.9286 35 1 4.8541 2.4320 -1.2354 36 1 4.6326 4.1219 -0.7211 37 1 5.2580 5.9342 2.1092 38 1 5.4694 4.4243 1.1906 39 1 6.5707 7.6177 -2.0806 40 1 2.8236 6.7885 2.2120 41 1 1.5868 5.5131 2.3219 42 1 3.2110 0.9314 1.7489 43 1 4.0241 0.5695 0.2074 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341334023.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:22 Heat of formation + Delta-G solvation = -258.158833 kcal Electronic energy + Delta-G solvation = -30399.131031 eV Core-core repulsion = 25835.559339 eV Total energy + Delta-G solvation = -4563.571692 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.150 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -51.09472 -48.61761 -48.58215 -41.80731 -39.33269 -37.12181 -37.02306 -34.60169 -32.39582 -31.42821 -30.45211 -29.23995 -27.26660 -25.24398 -24.56669 -23.50591 -23.18546 -21.72510 -20.00271 -19.58453 -19.37038 -19.10978 -18.33651 -17.89737 -17.35680 -16.91187 -16.61901 -16.15694 -16.00067 -15.67019 -15.49479 -15.47081 -15.18684 -15.03369 -14.80758 -14.77152 -14.74344 -14.35691 -14.33402 -14.00209 -13.69175 -13.57044 -13.29017 -13.14647 -13.03310 -12.97757 -12.74263 -12.50982 -12.36589 -12.08063 -11.83030 -11.82268 -11.62036 -11.38222 -11.26147 -10.68057 -10.44864 -10.22541 -9.71317 -8.25106 -6.28611 1.41635 1.43173 1.47937 1.53352 1.76650 2.02190 2.37816 2.83724 2.86298 3.03544 3.08884 3.27479 3.56329 3.80376 3.87364 4.09505 4.21997 4.27234 4.32330 4.37160 4.41176 4.50153 4.56705 4.62408 4.63610 4.67828 4.75716 4.84184 4.88727 4.99058 5.06822 5.17561 5.20292 5.34375 5.37900 5.45072 5.47789 5.72460 6.15085 6.35543 6.45591 6.74751 7.12206 7.33377 8.89262 Molecular weight = 323.15amu Principal moments of inertia in cm(-1) A = 0.010025 B = 0.006554 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2792.338403 B = 4270.973430 C = 6313.001744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.405 6.405 3 C 0.072 3.928 4 H 0.084 0.916 5 C -0.130 4.130 6 C -0.104 4.104 7 C -0.137 4.137 8 C -0.096 4.096 9 H 0.111 0.889 10 C 0.528 3.472 11 O -0.562 6.562 12 N -0.594 5.594 13 C 0.207 3.793 14 C -0.523 4.523 15 H 0.047 0.953 16 C 0.034 3.966 17 N -0.931 5.931 18 Si 0.918 3.082 19 H -0.259 1.259 20 H -0.291 1.291 21 H -0.244 1.244 22 C 0.076 3.924 23 C 0.439 3.561 24 F -0.186 7.186 25 F -0.180 7.180 26 F -0.188 7.188 27 C -0.089 4.089 28 H 0.102 0.898 29 H 0.036 0.964 30 H 0.042 0.958 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.036 0.964 35 H 0.081 0.919 36 H 0.104 0.896 37 H 0.044 0.956 38 H 0.056 0.944 39 H 0.267 0.733 40 H 0.134 0.866 41 H 0.126 0.874 42 H 0.063 0.937 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.242 -8.526 5.874 11.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.325 6.325 3 C 0.015 3.985 4 H 0.101 0.899 5 C -0.168 4.168 6 C -0.142 4.142 7 C -0.174 4.174 8 C -0.117 4.117 9 H 0.129 0.871 10 C 0.319 3.681 11 O -0.442 6.442 12 N -0.324 5.324 13 C 0.086 3.914 14 C -0.562 4.562 15 H 0.065 0.935 16 C -0.167 4.167 17 N -0.570 5.570 18 Si 0.741 3.259 19 H -0.183 1.183 20 H -0.217 1.217 21 H -0.167 1.167 22 C -0.050 4.050 23 C 0.384 3.616 24 F -0.167 7.167 25 F -0.162 7.162 26 F -0.169 7.169 27 C -0.127 4.127 28 H 0.120 0.880 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.055 0.945 35 H 0.100 0.900 36 H 0.122 0.878 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.151 0.849 41 H 0.144 0.856 42 H 0.082 0.918 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.595 -8.780 5.918 11.543 hybrid contribution 0.571 0.732 0.226 0.956 sum -4.024 -8.048 6.144 10.895 Atomic orbital electron populations 1.22868 0.80403 1.03414 0.99997 1.87771 1.20723 1.28787 1.95202 1.22607 0.96004 0.84449 0.95471 0.89876 1.21978 1.00967 0.96688 0.97137 1.21298 0.96503 0.95962 1.00405 1.22006 0.98029 1.05487 0.91890 1.21308 0.99029 0.93409 0.97954 0.87078 1.21054 0.87892 0.82071 0.77113 1.90490 1.20977 1.76960 1.55812 1.47831 1.18110 1.13371 1.53126 1.19961 0.79571 0.96592 0.95324 1.21223 0.94631 1.33960 1.06341 0.93483 1.25509 1.02293 0.94049 0.94813 1.70008 1.30707 1.36832 1.19478 0.86155 0.80216 0.78664 0.80834 1.18319 1.21664 1.16746 1.22533 0.99358 0.99316 0.83795 1.21383 0.74089 0.73445 0.92725 1.93175 1.38870 1.89393 1.95278 1.93165 1.67162 1.75835 1.80018 1.93170 1.95632 1.34708 1.93426 1.21333 0.95744 0.94675 1.00937 0.87952 0.94551 0.93912 0.90827 0.92160 0.91869 0.94518 0.90029 0.87817 0.93758 0.92659 0.92333 0.84852 0.85630 0.91785 0.89301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.82 113.37 1.23 1.92 16 2 O -0.41 -12.06 10.35 -148.98 -1.54 -13.60 16 3 C 0.07 2.21 2.32 30.60 0.07 2.28 16 4 H 0.08 2.94 4.78 -2.39 -0.01 2.93 16 5 C -0.13 -3.80 5.54 30.60 0.17 -3.63 16 6 C -0.10 -3.46 5.70 30.60 0.17 -3.28 16 7 C -0.14 -4.54 5.18 30.59 0.16 -4.39 16 8 C -0.10 -3.02 2.17 -11.55 -0.03 -3.05 16 9 H 0.11 3.15 6.96 -2.39 -0.02 3.14 16 10 C 0.53 18.80 5.07 87.66 0.44 19.25 16 11 O -0.56 -21.45 12.73 -3.04 -0.04 -21.49 16 12 N -0.59 -21.26 2.36 -826.15 -1.95 -23.21 16 13 C 0.21 7.95 3.64 85.63 0.31 8.26 16 14 C -0.52 -24.32 7.26 25.60 0.19 -24.14 16 15 H 0.05 2.51 8.06 -2.91 -0.02 2.48 16 16 C 0.03 1.66 5.47 84.66 0.46 2.12 16 17 N -0.93 -50.74 13.96 21.45 0.30 -50.44 16 18 Si 0.92 36.95 27.47 68.60 1.88 38.84 16 19 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 20 H -0.29 -12.09 7.11 99.48 0.71 -11.39 16 21 H -0.24 -9.07 6.54 99.48 0.65 -8.42 16 22 C 0.08 2.41 5.51 86.38 0.48 2.88 16 23 C 0.44 13.46 3.30 71.98 0.24 13.70 16 24 F -0.19 -5.93 16.15 44.97 0.73 -5.20 16 25 F -0.18 -5.14 17.32 44.97 0.78 -4.36 16 26 F -0.19 -6.26 16.56 44.97 0.74 -5.51 16 27 C -0.09 -2.61 4.83 30.58 0.15 -2.46 16 28 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.04 0.88 8.09 -2.39 -0.02 0.86 16 30 H 0.04 0.94 7.87 -2.38 -0.02 0.92 16 31 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.06 1.67 7.87 -2.39 -0.02 1.65 16 33 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.04 1.37 7.22 -2.39 -0.02 1.35 16 35 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.10 4.11 3.88 -2.38 -0.01 4.10 16 37 H 0.04 1.70 6.10 -2.38 -0.01 1.69 16 38 H 0.06 2.00 5.02 -2.39 -0.01 1.99 16 39 H 0.27 13.85 8.31 -92.71 -0.77 13.08 16 40 H 0.13 4.00 8.09 -2.38 -0.02 3.98 16 41 H 0.13 3.82 7.30 -2.39 -0.02 3.80 16 42 H 0.06 1.91 8.14 -2.39 -0.02 1.90 16 43 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -56.02 342.83 5.93 -50.09 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: 0.98 Total: 25.42 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: 4.04 Total: 9.46 kcal Atomic # 7 Polarization: -72.01 SS G_CDS: -1.65 Total: -73.65 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -1.58 Total: -35.09 kcal Atomic # 9 Polarization: -17.32 SS G_CDS: 2.25 Total: -15.07 kcal Atomic # 14 Polarization: 36.95 SS G_CDS: 1.88 Total: 38.84 kcal Total: -56.02 5.93 -50.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341334023.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -208.069 kcal (2) G-P(sol) polarization free energy of solvation -56.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -264.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -258.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds